Wall clock time and date at job start Mon Mar 30 2020 00:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.67524 * 2 1 4 4 O 1.44420 * 110.65189 * 237.03397 * 2 1 3 5 5 C 1.43746 * 106.99678 * 201.48360 * 4 2 1 6 6 C 1.54100 * 107.29641 * 26.48751 * 5 4 2 7 7 C 1.54807 * 104.18485 * 357.96900 * 6 5 4 8 8 H 1.09006 * 110.90629 * 97.35659 * 7 6 5 9 9 C 1.50704 * 110.90569 * 220.91912 * 7 6 5 10 10 O 1.21291 * 119.99900 * 109.94476 * 9 7 6 11 11 N 1.34771 * 119.99904 * 289.66934 * 9 7 6 12 12 C 1.37101 * 120.00402 * 354.01031 * 11 9 7 13 13 H 1.08001 * 119.99774 * 126.29299 * 12 11 9 14 14 C 1.38943 * 120.00030 * 306.29608 * 12 11 9 15 15 N 1.31411 * 120.00082 * 156.67155 * 14 12 11 16 16 Si 1.86802 * 119.99909 * 336.67166 * 14 12 11 17 17 H 1.48490 * 109.47346 * 92.59690 * 16 14 12 18 18 H 1.48500 * 109.46936 * 212.59760 * 16 14 12 19 19 H 1.48502 * 109.47033 * 332.59452 * 16 14 12 20 20 C 1.46501 * 119.99776 * 174.01200 * 11 9 7 21 21 C 1.54270 * 110.03210 * 242.54866 * 20 11 9 22 22 C 1.54960 * 104.16154 * 217.13610 * 21 20 11 23 23 C 1.54891 * 102.77767 * 37.88524 * 22 21 20 24 24 C 1.53874 * 110.03350 * 125.33119 * 20 11 9 25 25 H 1.09005 * 109.47040 * 297.03927 * 1 2 3 26 26 H 1.08998 * 109.47178 * 57.03305 * 1 2 3 27 27 H 1.08997 * 109.47514 * 177.03151 * 1 2 3 28 28 H 1.08995 * 109.87860 * 267.05957 * 5 4 2 29 29 H 1.09004 * 109.87524 * 145.91277 * 5 4 2 30 30 H 1.08993 * 110.48316 * 239.29053 * 6 5 4 31 31 H 1.09003 * 110.48501 * 116.64740 * 6 5 4 32 32 H 0.97008 * 119.99622 * 180.02562 * 15 14 12 33 33 H 1.09004 * 110.02083 * 3.93529 * 20 11 9 34 34 H 1.09000 * 110.48491 * 335.78089 * 21 20 11 35 35 H 1.08999 * 110.48618 * 98.42673 * 21 20 11 36 36 H 1.09004 * 110.72504 * 279.57328 * 22 21 20 37 37 H 1.09003 * 110.92564 * 156.29654 * 22 21 20 38 38 H 1.09000 * 110.48950 * 203.40194 * 23 22 21 39 39 H 1.09004 * 110.59852 * 80.82139 * 23 22 21 40 40 H 1.08997 * 110.03214 * 238.56713 * 24 20 11 41 41 H 1.08991 * 110.03315 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0393 -0.7354 -1.1338 5 6 3.3845 -1.1262 -0.8112 6 6 3.4794 -1.2175 0.7241 7 6 2.0758 -0.7893 1.2171 8 1 1.4545 -1.6603 1.4262 9 6 2.1796 0.0979 2.4308 10 8 1.9015 1.2755 2.3468 11 7 2.5761 -0.4184 3.6109 12 6 2.7666 -1.7701 3.7386 13 1 3.7058 -2.1500 4.1127 14 6 1.7514 -2.6510 3.3866 15 7 2.0405 -3.8918 3.0647 16 14 -0.0244 -2.0715 3.3711 17 1 -0.3782 -1.5967 2.0094 18 1 -0.9157 -3.1972 3.7500 19 1 -0.1908 -0.9600 4.3418 20 6 2.8036 0.4649 4.7574 21 6 4.2819 0.3955 5.1928 22 6 4.2264 0.4850 6.7388 23 6 2.9665 -0.3468 7.0851 24 6 1.9674 -0.0064 5.9600 25 1 -0.3633 0.4672 0.9154 26 1 -0.3633 0.5592 -0.8622 27 1 -0.3634 -1.0262 -0.0532 28 1 4.0865 -0.3795 -1.1822 29 1 3.6047 -2.0974 -1.2546 30 1 4.2408 -0.5345 1.1005 31 1 3.6967 -2.2401 1.0327 32 1 1.3317 -4.5067 2.8186 33 1 2.5388 1.4898 4.4972 34 1 4.7274 -0.5494 4.8814 35 1 4.8408 1.2359 4.7811 36 1 4.1069 1.5194 7.0613 37 1 5.1164 0.0428 7.1866 38 1 2.5664 -0.0479 8.0540 39 1 3.1973 -1.4121 7.0810 40 1 1.2974 0.7899 6.2840 41 1 1.3927 -0.8926 5.6909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094177543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:09 Heat of formation + Delta-G solvation = -100.547902 kcal Electronic energy + Delta-G solvation = -22490.369815 eV Core-core repulsion = 19369.306051 eV Total energy + Delta-G solvation = -3121.063764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60789 -39.92273 -38.28282 -36.07717 -33.79232 -33.25276 -32.42959 -29.54249 -29.01656 -27.34042 -26.39663 -23.54617 -22.68534 -21.62822 -21.05127 -20.86994 -19.15284 -17.67230 -17.45760 -17.17673 -16.42953 -16.19874 -15.99282 -15.79419 -15.45140 -15.02368 -14.77569 -14.45497 -14.21724 -13.90718 -13.48162 -13.39056 -13.23381 -12.93914 -12.75981 -12.57633 -12.43930 -12.25233 -12.13364 -11.87071 -11.82407 -11.75367 -11.42947 -11.38678 -11.27034 -10.93305 -10.65035 -10.41500 -9.42290 -8.53578 -6.23933 1.18428 1.28533 1.35531 1.75897 2.15680 2.55217 2.87301 2.90083 3.70105 3.76948 3.81025 3.87659 3.98698 4.14403 4.17705 4.24855 4.38933 4.41003 4.59179 4.61741 4.66162 4.70375 4.72570 4.73260 4.87690 4.89502 4.96589 5.03117 5.05059 5.13165 5.15200 5.21951 5.26653 5.38873 5.44008 5.55485 5.71689 5.88260 5.93121 6.47203 6.98607 7.34637 7.79942 8.58494 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.008790 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.610099 B = 3184.543408 C = 3547.255372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.074 0.926 4 O -0.389 6.389 5 C 0.049 3.951 6 C -0.119 4.119 7 C -0.130 4.130 8 H 0.094 0.906 9 C 0.492 3.508 10 O -0.614 6.614 11 N -0.462 5.462 12 C -0.325 4.325 13 H 0.079 0.921 14 C 0.064 3.936 15 N -0.875 5.875 16 Si 0.859 3.141 17 H -0.246 1.246 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.117 3.883 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.278 0.722 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 4.818 0.850 5.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.032 3.968 3 H 0.092 0.908 4 O -0.308 6.308 5 C -0.027 4.027 6 C -0.157 4.157 7 C -0.152 4.152 8 H 0.112 0.888 9 C 0.282 3.718 10 O -0.500 6.500 11 N -0.182 5.182 12 C -0.453 4.453 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.511 5.511 16 Si 0.683 3.317 17 H -0.170 1.170 18 H -0.210 1.210 19 H -0.191 1.191 20 C 0.014 3.986 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.871 5.141 0.592 5.503 hybrid contribution -0.974 -0.300 0.343 1.075 sum 0.897 4.841 0.935 5.012 Atomic orbital electron populations 1.21768 0.92884 1.02364 1.02578 1.22931 0.95620 0.94983 0.83305 0.90773 1.88777 1.29185 1.73994 1.38883 1.23314 0.83867 1.01554 0.93966 1.22554 0.94758 1.03074 0.95330 1.22769 0.99998 0.98894 0.93507 0.88821 1.20662 0.78812 0.87211 0.85120 1.90498 1.55269 1.18290 1.85935 1.43882 1.60399 1.06904 1.07047 1.18451 1.00425 0.78835 1.47600 0.90303 1.25752 0.99469 0.94833 0.94179 1.69790 1.34657 1.06048 1.40561 0.87280 0.84479 0.78983 0.80912 1.17026 1.20954 1.19065 1.21951 0.96193 0.93814 0.86693 1.22597 0.94777 1.01527 0.97200 1.22412 0.98019 1.00596 0.93639 1.22239 0.95292 0.99941 0.97424 1.22443 0.98530 1.00595 0.95403 0.92379 0.89735 0.92492 0.90611 0.88152 0.91359 0.90057 0.91145 0.91171 0.92068 0.91711 0.90192 0.90125 0.90023 0.92525 0.91938 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.65 71.98 0.62 -4.48 16 2 C 0.09 3.55 3.10 31.27 0.10 3.65 16 3 H 0.07 3.02 7.38 -2.39 -0.02 3.00 16 4 O -0.39 -14.60 11.23 -148.98 -1.67 -16.27 16 5 C 0.05 1.61 7.70 72.35 0.56 2.17 16 6 C -0.12 -4.62 5.94 31.58 0.19 -4.43 16 7 C -0.13 -5.69 1.55 -10.24 -0.02 -5.70 16 8 H 0.09 4.43 3.55 -2.38 -0.01 4.42 16 9 C 0.49 23.15 5.28 87.66 0.46 23.62 16 10 O -0.61 -30.65 15.07 -3.06 -0.05 -30.70 16 11 N -0.46 -21.25 1.85 -609.37 -1.13 -22.38 16 12 C -0.33 -15.87 6.95 84.04 0.58 -15.28 16 13 H 0.08 4.14 7.13 -2.91 -0.02 4.12 16 14 C 0.06 3.21 3.95 84.92 0.34 3.55 16 15 N -0.88 -45.46 13.96 21.66 0.30 -45.16 16 16 Si 0.86 39.97 24.17 68.60 1.66 41.63 16 17 H -0.25 -11.03 4.64 99.48 0.46 -10.57 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.74 6.30 99.48 0.63 -12.11 16 20 C 0.12 4.72 3.29 45.72 0.15 4.87 16 21 C -0.12 -4.17 6.43 31.69 0.20 -3.97 16 22 C -0.11 -2.92 6.91 31.91 0.22 -2.70 16 23 C -0.11 -3.33 6.83 31.67 0.22 -3.12 16 24 C -0.13 -4.92 6.25 31.32 0.20 -4.72 16 25 H 0.06 2.25 8.08 -2.38 -0.02 2.23 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.06 2.10 7.52 -2.39 -0.02 2.08 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.07 2.60 7.85 -2.39 -0.02 2.58 16 31 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 33 H 0.07 2.98 6.96 -2.39 -0.02 2.96 16 34 H 0.06 2.31 6.67 -2.39 -0.02 2.29 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 2.27 5.08 -2.39 -0.01 2.25 16 Total: -1.00 -56.57 307.08 3.61 -52.96 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.68 Total: 26.48 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.82 Total: -6.56 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.83 Total: -67.54 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.72 Total: -46.97 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.66 Total: 41.63 kcal Total: -56.57 3.61 -52.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.589 kcal (2) G-P(sol) polarization free energy of solvation -56.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds