Wall clock time and date at job start Mon Mar 30 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 110.55663 * 2 1 4 4 C 1.54998 * 110.61514 * 237.11828 * 2 1 3 5 5 C 1.54805 * 102.09403 * 204.31718 * 4 2 1 6 6 C 1.54107 * 104.18725 * 20.88526 * 5 4 2 7 7 H 1.08994 * 109.87873 * 242.45639 * 6 5 4 8 8 C 1.50701 * 109.87916 * 121.45012 * 6 5 4 9 9 O 1.21288 * 120.00250 * 246.88866 * 8 6 5 10 10 N 1.34779 * 119.99938 * 66.88960 * 8 6 5 11 11 C 1.37098 * 119.99646 * 355.69304 * 10 8 6 12 12 H 1.08005 * 119.99760 * 233.69385 * 11 10 8 13 13 C 1.38942 * 120.00116 * 53.69955 * 11 10 8 14 14 N 1.31416 * 120.00181 * 200.64090 * 13 11 10 15 15 Si 1.86809 * 120.00165 * 20.64420 * 13 11 10 16 16 H 1.48493 * 109.46933 * 86.89624 * 15 13 11 17 17 H 1.48495 * 109.46970 * 206.89688 * 15 13 11 18 18 H 1.48496 * 109.46876 * 326.89468 * 15 13 11 19 19 C 1.46497 * 119.99800 * 175.69332 * 10 8 6 20 20 C 1.54267 * 110.07019 * 122.11949 * 19 10 8 21 21 C 1.54892 * 104.19557 * 95.69554 * 20 19 10 22 22 C 1.54879 * 102.75023 * 37.94217 * 21 20 19 23 23 C 1.53875 * 110.02930 * 239.30653 * 19 10 8 24 24 O 1.43749 * 107.41795 * 1.95305 * 6 5 4 25 25 H 1.08998 * 109.47207 * 182.87684 * 1 2 3 26 26 H 1.08999 * 109.46583 * 302.87922 * 1 2 3 27 27 H 1.09004 * 109.46831 * 62.87906 * 1 2 3 28 28 H 1.09008 * 110.90196 * 86.12188 * 4 2 1 29 29 H 1.08996 * 110.94243 * 322.53460 * 4 2 1 30 30 H 1.08994 * 110.49043 * 262.21204 * 5 4 2 31 31 H 1.08996 * 110.60125 * 139.61590 * 5 4 2 32 32 H 0.97004 * 119.99834 * 179.97438 * 14 13 11 33 33 H 1.08995 * 110.01939 * 0.70342 * 19 10 8 34 34 H 1.08998 * 110.49003 * 214.37026 * 20 19 10 35 35 H 1.09002 * 110.49070 * 337.01413 * 20 19 10 36 36 H 1.09002 * 110.75826 * 279.62488 * 21 20 19 37 37 H 1.09001 * 110.75876 * 156.25833 * 21 20 19 38 38 H 1.08998 * 110.48756 * 203.37876 * 22 21 20 39 39 H 1.09002 * 110.48878 * 80.73448 * 22 21 20 40 40 H 1.08999 * 110.03244 * 359.95547 * 23 19 10 41 41 H 1.09004 * 110.02909 * 121.38902 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9128 1.0205 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4811 -1.2122 -0.7270 6 6 3.3875 -1.1220 0.8086 7 1 4.0897 -0.3754 1.1794 8 6 3.6961 -2.4641 1.4205 9 8 2.8271 -3.0807 1.9999 10 7 4.9378 -2.9793 1.3240 11 6 5.8966 -2.3250 0.5944 12 1 6.4330 -2.8474 -0.1839 13 6 6.1782 -0.9898 0.8564 14 7 6.7682 -0.2513 -0.0566 15 14 5.7183 -0.2445 2.5065 16 1 6.8167 -0.4776 3.4782 17 1 5.5004 1.2157 2.3465 18 1 4.4722 -0.8791 3.0061 19 6 5.2629 -4.2383 1.9988 20 6 5.7646 -5.2749 0.9722 21 6 7.3077 -5.1567 1.0362 22 6 7.5709 -4.9299 2.5455 23 6 6.4114 -4.0189 2.9991 24 8 2.0428 -0.7332 1.1357 25 1 -0.3633 -1.0263 0.0516 26 1 -0.3632 0.5579 0.8631 27 1 -0.3633 0.4685 -0.9147 28 1 2.1483 -0.1452 -2.0960 29 1 1.4567 -1.6600 -1.4273 30 1 4.2402 -0.5269 -1.1038 31 1 3.7031 -2.2335 -1.0363 32 1 6.9644 0.6809 0.1262 33 1 4.3841 -4.6215 2.5173 34 1 5.4468 -6.2780 1.2565 35 1 5.4042 -5.0282 -0.0264 36 1 7.6545 -4.3047 0.4513 37 1 7.7802 -6.0781 0.6959 38 1 8.5286 -4.4314 2.6951 39 1 7.5447 -5.8773 3.0840 40 1 6.7274 -2.9759 2.9819 41 1 6.0899 -4.2957 4.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130549160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:41 Heat of formation + Delta-G solvation = -91.928614 kcal Electronic energy + Delta-G solvation = -22450.408945 eV Core-core repulsion = 19329.718941 eV Total energy + Delta-G solvation = -3120.690003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65219 -39.96032 -38.24127 -36.06943 -33.74066 -33.26231 -32.46644 -29.53758 -29.23991 -27.46722 -26.30313 -23.52160 -22.14458 -21.72277 -21.28207 -20.99521 -19.27841 -17.79317 -17.56127 -17.42494 -16.41284 -16.25258 -15.98097 -15.77469 -15.31212 -14.94184 -14.72431 -14.50444 -14.15624 -13.93059 -13.36162 -13.22099 -12.94954 -12.83524 -12.66996 -12.57676 -12.39446 -12.25283 -12.14534 -11.87868 -11.83347 -11.78553 -11.61909 -11.50431 -11.31825 -11.00399 -10.87960 -10.27116 -9.41896 -8.53542 -6.23916 1.07327 1.17610 1.29931 1.76325 2.07627 2.30822 2.84291 3.12149 3.66609 3.76953 3.81541 3.86433 3.90675 4.06524 4.17779 4.21660 4.37857 4.49001 4.58587 4.64421 4.69381 4.73673 4.79873 4.81258 4.91885 4.92477 5.00664 5.01726 5.13174 5.17072 5.21491 5.22399 5.25650 5.35413 5.43760 5.65029 5.69909 5.89568 6.00771 6.44731 6.97457 7.32417 7.78464 8.57809 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.008395 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.804880 B = 3334.449384 C = 3745.720970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 H 0.075 0.925 4 C -0.141 4.141 5 C -0.113 4.113 6 C 0.075 3.925 7 H 0.060 0.940 8 C 0.486 3.514 9 O -0.611 6.611 10 N -0.466 5.466 11 C -0.322 4.322 12 H 0.094 0.906 13 C 0.065 3.935 14 N -0.870 5.870 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.285 1.285 19 C 0.117 3.883 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.132 4.132 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.280 0.720 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -2.213 -2.112 4.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.006 4.006 3 H 0.093 0.907 4 C -0.178 4.178 5 C -0.151 4.151 6 C 0.014 3.986 7 H 0.078 0.922 8 C 0.276 3.724 9 O -0.496 6.496 10 N -0.189 5.189 11 C -0.450 4.450 12 H 0.111 0.889 13 C -0.141 4.141 14 N -0.506 5.506 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.211 1.211 19 C 0.014 3.986 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.170 4.170 24 O -0.306 6.306 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.067 -2.385 -1.702 4.242 hybrid contribution 0.196 0.908 1.035 1.390 sum -2.871 -1.477 -0.667 3.297 Atomic orbital electron populations 1.21752 0.90838 1.02812 1.03787 1.23598 0.97031 0.95328 0.84648 0.90684 1.23240 0.94729 1.01095 0.98774 1.22540 0.98554 1.03288 0.90732 1.22526 0.84581 0.93530 0.97952 0.92241 1.20810 0.82656 0.88058 0.80867 1.90482 1.47636 1.63620 1.47851 1.43842 1.07524 1.21717 1.45800 1.18662 1.17971 0.93609 1.14721 0.88889 1.25701 0.94945 0.96768 0.96686 1.69725 1.40251 1.08130 1.32452 0.87085 0.78469 0.79040 0.85364 1.19970 1.19885 1.21089 1.21936 0.97177 0.85695 0.93831 1.22508 0.96983 0.97742 0.98036 1.22445 0.94527 1.01605 0.96460 1.22223 0.96857 0.99101 0.96200 1.22472 0.96122 1.00448 0.97942 1.88939 1.27165 1.73928 1.40617 0.92652 0.91985 0.87761 0.87080 0.90259 0.89628 0.91369 0.90979 0.91609 0.89695 0.92870 0.92486 0.89800 0.91642 0.89688 0.93408 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.66 71.98 0.70 -2.82 16 2 C 0.05 1.72 3.97 31.28 0.12 1.84 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.14 -4.47 6.59 31.89 0.21 -4.26 16 5 C -0.11 -4.64 5.17 31.59 0.16 -4.48 16 6 C 0.07 3.58 2.35 30.22 0.07 3.65 16 7 H 0.06 3.01 2.68 -2.39 -0.01 3.01 16 8 C 0.49 25.45 4.91 87.66 0.43 25.88 16 9 O -0.61 -35.02 15.89 15.63 0.25 -34.77 16 10 N -0.47 -22.50 1.79 -609.39 -1.09 -23.59 16 11 C -0.32 -15.79 6.09 84.04 0.51 -15.27 16 12 H 0.09 4.78 6.64 -2.91 -0.02 4.76 16 13 C 0.07 3.26 3.73 84.92 0.32 3.58 16 14 N -0.87 -44.21 13.96 21.66 0.30 -43.91 16 15 Si 0.87 42.63 23.17 68.60 1.59 44.22 16 16 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.28 -15.27 5.44 99.48 0.54 -14.73 16 19 C 0.12 4.90 3.35 45.72 0.15 5.06 16 20 C -0.11 -3.97 6.00 31.67 0.19 -3.78 16 21 C -0.11 -3.52 6.53 31.88 0.21 -3.31 16 22 C -0.11 -3.18 6.83 31.67 0.22 -2.97 16 23 C -0.13 -4.98 6.28 31.32 0.20 -4.78 16 24 O -0.39 -18.02 10.47 -130.30 -1.36 -19.39 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 29 H 0.08 2.41 8.06 -2.39 -0.02 2.39 16 30 H 0.09 3.62 7.88 -2.39 -0.02 3.60 16 31 H 0.07 2.94 7.42 -2.39 -0.02 2.92 16 32 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.07 2.95 6.95 -2.39 -0.02 2.93 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 35 H 0.05 2.00 7.98 -2.39 -0.02 1.98 16 36 H 0.06 2.08 6.53 -2.39 -0.02 2.06 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.08 5.68 -2.39 -0.01 2.06 16 41 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -63.17 305.92 4.02 -59.15 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.84 Total: 19.96 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 3.49 Total: -1.67 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.79 Total: -67.50 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -1.12 Total: -54.16 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.59 Total: 44.22 kcal Total: -63.17 4.02 -59.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130549160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.781 kcal (2) G-P(sol) polarization free energy of solvation -63.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds