Wall clock time and date at job start Mon Mar 30 2020 00:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.82281 * 2 1 4 4 C 1.54374 * 109.83586 * 120.98538 * 2 1 3 5 5 C 1.55303 * 102.25678 * 140.86867 * 4 2 1 6 6 C 1.54940 * 100.94189 * 325.87032 * 5 4 2 7 7 H 1.09002 * 110.39146 * 277.48626 * 6 5 4 8 8 C 1.50701 * 110.31181 * 155.35808 * 6 5 4 9 9 O 1.21283 * 120.00002 * 254.79553 * 8 6 5 10 10 N 1.34780 * 119.99928 * 74.78934 * 8 6 5 11 11 C 1.46496 * 119.99804 * 4.98590 * 10 8 6 12 12 C 1.50694 * 109.47489 * 269.99527 * 11 10 8 13 13 H 1.08008 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00619 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00430 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99774 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47412 * 89.99691 * 16 14 12 18 18 H 1.48502 * 109.47092 * 209.99818 * 16 14 12 19 19 H 1.48497 * 109.46800 * 329.99761 * 16 14 12 20 20 C 1.46498 * 119.99747 * 184.98320 * 10 8 6 21 21 C 1.53001 * 109.46949 * 84.77903 * 20 10 8 22 22 C 1.53000 * 117.49832 * 174.99900 * 21 20 10 23 23 C 1.52998 * 60.03139 * 107.49542 * 22 21 20 24 24 O 1.43237 * 109.83112 * 239.11851 * 2 1 3 25 25 H 1.09010 * 109.46956 * 179.42721 * 1 2 3 26 26 H 1.08996 * 109.46989 * 299.42173 * 1 2 3 27 27 H 1.08999 * 109.47219 * 59.43102 * 1 2 3 28 28 H 1.09001 * 110.84858 * 259.06557 * 4 2 1 29 29 H 1.09008 * 110.84752 * 22.67830 * 4 2 1 30 30 H 1.09001 * 111.12363 * 207.94679 * 5 4 2 31 31 H 1.09002 * 111.12101 * 83.78886 * 5 4 2 32 32 H 1.09002 * 109.47499 * 30.00218 * 11 10 8 33 33 H 1.09002 * 109.47120 * 149.99756 * 11 10 8 34 34 H 0.97000 * 120.00244 * 180.02562 * 15 14 12 35 35 H 1.08991 * 109.47498 * 324.77436 * 20 10 8 36 36 H 1.09003 * 109.46692 * 204.77308 * 20 10 8 37 37 H 1.08996 * 115.55294 * 29.32446 * 21 20 10 38 38 H 1.08996 * 117.50243 * 215.00068 * 22 21 20 39 39 H 1.09004 * 117.49611 * 359.97438 * 22 21 20 40 40 H 1.09008 * 117.49611 * 107.50207 * 23 22 21 41 41 H 1.08998 * 117.50015 * 252.51674 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7476 1.2449 5 6 3.2730 -1.5227 0.6753 6 6 2.7748 -1.8437 -0.7563 7 1 2.1405 -2.7301 -0.7478 8 6 3.9447 -2.0475 -1.6840 9 8 4.2391 -1.1873 -2.4868 10 7 4.6640 -3.1856 -1.6216 11 6 4.2444 -4.2693 -0.7296 12 6 4.8877 -4.0861 0.6207 13 1 5.5433 -3.2461 0.7971 14 6 4.6386 -4.9902 1.6314 15 7 5.1996 -4.8301 2.8100 16 14 3.5040 -6.4426 1.3267 17 1 4.2977 -7.5949 0.8292 18 1 2.8284 -6.8176 2.5949 19 1 2.4841 -6.0699 0.3138 20 6 5.8655 -3.3388 -2.4457 21 6 7.0610 -2.7111 -1.7261 22 6 8.4383 -2.8709 -2.3729 23 6 7.7374 -1.5110 -2.3936 24 8 2.0159 -0.6916 -1.1564 25 1 -0.3633 -1.0277 -0.0103 26 1 -0.3633 0.5048 0.8951 27 1 -0.3633 0.5226 -0.8848 28 1 2.3672 -0.0443 2.0165 29 1 1.3012 -1.4364 1.6290 30 1 3.4573 -2.4359 1.2412 31 1 4.1620 -0.8925 0.6497 32 1 3.1599 -4.2511 -0.6210 33 1 4.5512 -5.2264 -1.1514 34 1 5.0246 -5.4663 3.5210 35 1 5.7153 -2.8406 -3.4033 36 1 6.0581 -4.3985 -2.6137 37 1 7.0121 -2.7202 -0.6373 38 1 9.2956 -2.9852 -1.7096 39 1 8.4928 -3.4236 -3.3108 40 1 8.1337 -0.7307 -1.7437 41 1 7.3305 -1.1690 -3.3451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152413071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:36 Heat of formation + Delta-G solvation = -58.793025 kcal Electronic energy + Delta-G solvation = -21719.857727 eV Core-core repulsion = 18600.604590 eV Total energy + Delta-G solvation = -3119.253137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90036 -38.29246 -36.63927 -34.84847 -32.53150 -31.92438 -31.20635 -28.48447 -27.28566 -25.31783 -22.61574 -21.97456 -21.76924 -20.88494 -20.19319 -18.42364 -17.30998 -16.87990 -16.01725 -15.53860 -15.19874 -14.67465 -14.32387 -13.92128 -13.84156 -13.48892 -13.08877 -12.88508 -12.65124 -12.35950 -12.24740 -11.86841 -11.70580 -11.46463 -11.25711 -11.13389 -11.05466 -10.91928 -10.73175 -10.47732 -10.40594 -10.29299 -9.98080 -9.58294 -9.50124 -9.39735 -8.83422 -8.64033 -7.78537 -6.28260 -4.28204 3.12881 3.20716 3.23399 3.30419 3.52519 4.20617 4.24030 4.45704 4.90919 5.01344 5.08886 5.17842 5.25251 5.35933 5.45779 5.50046 5.52119 5.56497 5.68649 5.86747 5.93459 5.95459 5.97015 6.08052 6.14364 6.17704 6.20177 6.27625 6.34549 6.41553 6.49254 6.58920 6.65406 6.85753 6.91664 7.25397 7.37681 7.46203 8.08436 8.35995 8.76590 8.94806 9.30715 10.83066 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.009818 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.156079 B = 2851.355002 C = 4559.149342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.073 3.927 3 H 0.075 0.925 4 C -0.151 4.151 5 C -0.140 4.140 6 C 0.071 3.929 7 H 0.088 0.912 8 C 0.522 3.478 9 O -0.548 6.548 10 N -0.589 5.589 11 C 0.203 3.797 12 C -0.535 4.535 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.887 5.887 16 Si 0.866 3.134 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.156 3.844 21 C -0.155 4.155 22 C -0.182 4.182 23 C -0.177 4.177 24 O -0.360 6.360 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 3.644 -4.373 6.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.015 3.985 3 H 0.093 0.907 4 C -0.189 4.189 5 C -0.177 4.177 6 C 0.011 3.989 7 H 0.106 0.894 8 C 0.309 3.691 9 O -0.427 6.427 10 N -0.321 5.321 11 C 0.082 3.918 12 C -0.574 4.574 13 H 0.102 0.898 14 C -0.126 4.126 15 N -0.524 5.524 16 Si 0.693 3.307 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.033 3.967 21 C -0.174 4.174 22 C -0.220 4.220 23 C -0.214 4.214 24 O -0.279 6.279 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.448 4.066 -4.820 7.187 hybrid contribution -0.443 -1.012 0.396 1.173 sum -3.890 3.054 -4.424 6.636 Atomic orbital electron populations 1.22131 0.95351 1.02422 1.01785 1.22730 0.93797 0.96343 0.85594 0.90728 1.23215 0.98552 0.99573 0.97526 1.23433 0.97007 1.03736 0.93552 1.22764 0.91806 0.90031 0.94343 0.89410 1.20228 0.83788 0.81593 0.83448 1.90607 1.70707 1.42935 1.38418 1.47796 1.25328 1.16513 1.42416 1.19925 0.95916 0.85733 0.90212 1.21377 1.29775 1.12647 0.93569 0.89810 1.24857 0.95509 0.97304 0.94969 1.69879 1.42981 1.36743 1.02824 0.87001 0.81726 0.83716 0.78280 1.19935 1.20912 1.18853 1.20834 0.82926 1.00025 0.92929 1.22878 0.92460 1.01213 1.00892 1.22879 0.96105 1.00571 1.02446 1.22943 1.04487 0.91399 1.02567 1.88457 1.69618 1.40207 1.29631 0.92243 0.91765 0.92283 0.90284 0.90476 0.85076 0.90924 0.94890 0.95088 0.92323 0.91114 0.90482 0.86373 0.89190 0.89319 0.89589 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.44 37.16 0.35 -1.65 16 2 C 0.07 1.13 4.16 -26.01 -0.11 1.02 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C -0.15 -2.28 6.54 -24.79 -0.16 -2.45 16 5 C -0.14 -2.61 5.72 -24.49 -0.14 -2.75 16 6 C 0.07 1.38 3.02 -26.86 -0.08 1.30 16 7 H 0.09 1.65 6.62 -51.93 -0.34 1.31 16 8 C 0.52 11.20 6.96 -10.98 -0.08 11.12 16 9 O -0.55 -13.06 16.22 -13.55 -0.22 -13.28 16 10 N -0.59 -11.96 2.47 -175.07 -0.43 -12.39 16 11 C 0.20 4.28 3.98 -5.20 -0.02 4.26 16 12 C -0.54 -12.84 6.83 -34.44 -0.24 -13.07 16 13 H 0.08 2.24 7.01 -52.48 -0.37 1.87 16 14 C 0.08 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.89 -24.07 13.96 55.43 0.77 -23.29 16 16 Si 0.87 18.82 27.47 -169.99 -4.67 14.15 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 20 C 0.16 2.84 5.72 -4.04 -0.02 2.82 16 21 C -0.16 -2.79 5.98 -90.58 -0.54 -3.33 16 22 C -0.18 -2.70 10.25 -26.73 -0.27 -2.97 16 23 C -0.18 -2.86 10.18 -26.70 -0.27 -3.13 16 24 O -0.36 -7.00 10.29 -54.34 -0.56 -7.56 16 25 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.09 7.85 -51.92 -0.41 0.68 16 30 H 0.13 2.74 5.67 -51.93 -0.29 2.44 16 31 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 32 H 0.03 0.69 5.24 -51.93 -0.27 0.41 16 33 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.07 1.28 7.25 -51.93 -0.38 0.90 16 36 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 37 H 0.12 2.46 7.01 -51.93 -0.36 2.10 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 41 H 0.09 1.47 8.03 -51.93 -0.42 1.06 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -28.32 326.71 -8.46 -36.78 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.60 Total: 7.65 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.68 Total: -6.99 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.34 Total: -35.69 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.78 Total: -20.83 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.67 Total: 14.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.32 -8.46 -36.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152413071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.015 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds