Wall clock time and date at job start Mon Mar 30 2020 00:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.33318 * 2 1 4 4 C 1.54480 * 110.37684 * 122.24872 * 2 1 3 5 5 C 1.54509 * 104.06335 * 142.81112 * 4 2 1 6 6 C 1.54476 * 104.06316 * 359.97438 * 5 4 2 7 7 H 1.09007 * 110.37103 * 94.96830 * 6 5 4 8 8 C 1.50704 * 110.37409 * 217.19119 * 6 5 4 9 9 O 1.21275 * 120.00072 * 106.42592 * 8 6 5 10 10 N 1.34781 * 119.99828 * 286.42526 * 8 6 5 11 11 C 1.46492 * 120.00051 * 184.77541 * 10 8 6 12 12 C 1.50698 * 109.47263 * 269.72827 * 11 10 8 13 13 H 1.08000 * 119.99875 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99874 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99770 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47055 * 89.99888 * 16 14 12 18 18 H 1.48497 * 109.46779 * 209.99988 * 16 14 12 19 19 H 1.48497 * 109.46889 * 329.99567 * 16 14 12 20 20 C 1.46507 * 119.99854 * 4.49974 * 10 8 6 21 21 C 1.52995 * 109.47094 * 271.97220 * 20 10 8 22 22 C 1.53003 * 117.49842 * 243.62742 * 21 20 10 23 23 C 1.52998 * 117.50014 * 175.00465 * 21 20 10 24 24 O 1.44424 * 104.80557 * 336.02206 * 6 5 4 25 25 H 1.09001 * 109.47161 * 297.74742 * 1 2 3 26 26 H 1.09004 * 109.47231 * 57.75243 * 1 2 3 27 27 H 1.09003 * 109.47025 * 177.74954 * 1 2 3 28 28 H 1.09004 * 110.50993 * 24.16460 * 4 2 1 29 29 H 1.08993 * 110.62908 * 261.51656 * 4 2 1 30 30 H 1.09004 * 110.50987 * 241.35902 * 5 4 2 31 31 H 1.08994 * 110.51201 * 118.65192 * 5 4 2 32 32 H 1.09005 * 109.46978 * 29.72324 * 11 10 8 33 33 H 1.08998 * 109.47671 * 149.72401 * 11 10 8 34 34 H 0.97001 * 119.99638 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.46899 * 31.97504 * 20 10 8 36 36 H 1.09001 * 109.46668 * 151.97087 * 20 10 8 37 37 H 1.09001 * 115.55066 * 29.32578 * 21 20 10 38 38 H 1.08999 * 117.49803 * 359.97438 * 22 21 20 39 39 H 1.08994 * 117.50356 * 145.01926 * 22 21 20 40 40 H 1.09000 * 117.49860 * 214.98143 * 23 21 20 41 41 H 1.09006 * 117.49535 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0679 -0.7727 1.2247 5 6 3.3179 -1.5049 0.6874 6 6 3.3870 -1.0884 -0.7986 7 1 4.0535 -0.2349 -0.9228 8 6 3.8526 -2.2442 -1.6462 9 8 3.0644 -2.8316 -2.3564 10 7 5.1452 -2.6250 -1.6151 11 6 5.6203 -3.6786 -2.5152 12 6 5.4774 -5.0183 -1.8400 13 1 5.0734 -5.0787 -0.8402 14 6 5.8623 -6.1668 -2.4987 15 7 5.7380 -7.3359 -1.9092 16 14 6.5603 -6.0623 -4.2282 17 1 8.0353 -5.9052 -4.1580 18 1 6.2295 -7.3046 -4.9713 19 1 5.9709 -4.8939 -4.9300 20 6 6.0763 -1.9809 -0.6852 21 6 6.6791 -0.7392 -1.3453 22 6 8.1887 -0.7339 -1.5942 23 6 7.5921 0.1423 -0.4909 24 8 2.0323 -0.7257 -1.1436 25 1 -0.3633 0.4785 0.9095 26 1 -0.3634 0.5484 -0.8692 27 1 -0.3633 -1.0269 -0.0404 28 1 1.3276 -1.4903 1.5788 29 1 2.3426 -0.0836 2.0232 30 1 3.1956 -2.5844 0.7758 31 1 4.2109 -1.1760 1.2186 32 1 5.0289 -3.6682 -3.4308 33 1 6.6685 -3.5039 -2.7578 34 1 6.0085 -8.1439 -2.3727 35 1 5.5427 -1.6888 0.2192 36 1 6.8732 -2.6786 -0.4277 37 1 6.0457 -0.2436 -2.0811 38 1 8.7525 -1.6148 -1.2873 39 1 8.5488 -0.2348 -2.4938 40 1 7.5596 1.2178 -0.6646 41 1 7.7630 -0.1622 0.5418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152413247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:40 Heat of formation + Delta-G solvation = -53.800791 kcal Electronic energy + Delta-G solvation = -21334.064910 eV Core-core repulsion = 18215.028252 eV Total energy + Delta-G solvation = -3119.036657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12773 -38.35269 -37.14188 -34.49856 -32.60740 -32.22613 -31.55323 -28.69843 -26.77791 -25.84535 -22.88784 -22.32155 -21.82095 -21.10045 -20.62098 -18.65256 -16.95521 -16.78861 -16.43853 -16.06320 -15.16605 -14.90870 -14.53937 -14.31593 -13.80718 -13.73941 -13.49069 -12.89296 -12.56280 -12.47498 -12.25849 -12.15413 -11.80581 -11.65088 -11.52963 -11.44185 -11.31097 -10.94787 -10.85557 -10.71063 -10.56239 -10.37900 -10.05525 -9.81397 -9.72789 -9.51281 -8.86080 -8.57071 -7.73493 -6.06746 -4.05043 3.22704 3.28557 3.35629 3.42014 3.45420 3.83848 4.21144 4.41927 4.55640 4.67155 4.81936 4.90938 4.96190 4.99897 5.12953 5.15178 5.26088 5.32165 5.39094 5.47241 5.53968 5.61537 5.64969 5.67803 5.79959 5.87012 5.94478 5.97848 6.00632 6.12082 6.12266 6.17047 6.36028 6.66913 6.88362 7.01410 7.36063 7.63311 8.23127 8.48709 8.94572 8.99936 9.53758 11.06703 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.006525 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.961685 B = 4289.989715 C = 5371.289231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.146 4.146 6 C 0.060 3.940 7 H 0.088 0.912 8 C 0.513 3.487 9 O -0.516 6.516 10 N -0.587 5.587 11 C 0.219 3.781 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.134 3.866 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.179 4.179 24 O -0.343 6.343 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 17.987 6.894 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.085 0.915 4 C -0.186 4.186 5 C -0.183 4.183 6 C -0.002 4.002 7 H 0.105 0.895 8 C 0.298 3.702 9 O -0.391 6.391 10 N -0.320 5.320 11 C 0.099 3.901 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.010 3.990 21 C -0.192 4.192 22 C -0.213 4.213 23 C -0.217 4.217 24 O -0.261 6.261 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.089 17.387 6.260 18.512 hybrid contribution 0.658 -0.039 -0.676 0.944 sum -0.431 17.348 5.583 18.230 Atomic orbital electron populations 1.21787 0.93173 1.03265 1.02056 1.23020 0.95524 0.95226 0.85448 0.91463 1.23004 0.97721 0.99709 0.98157 1.22956 0.98672 1.02777 0.93939 1.22908 0.86227 0.96764 0.94275 0.89487 1.19947 0.82611 0.84372 0.83276 1.90699 1.52730 1.54732 1.40924 1.47775 1.07253 1.37833 1.39106 1.19663 0.94306 0.86009 0.90138 1.21324 1.42676 0.89104 1.03419 0.90759 1.24844 0.95292 0.95164 0.97668 1.69897 1.48000 0.97864 1.37890 0.86881 0.79499 0.78279 0.85331 1.20092 1.20943 1.18832 1.21240 0.93961 0.92292 0.91508 1.22962 0.93538 0.99573 1.03140 1.23020 0.95818 1.02393 1.00047 1.22925 1.04797 0.97239 0.96703 1.89286 1.25549 1.73950 1.37313 0.91306 0.91925 0.91487 0.90308 0.90456 0.89657 0.89627 0.94300 0.95418 0.92598 0.90532 0.89321 0.87890 0.88352 0.89125 0.89069 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.52 37.16 0.35 -1.19 16 2 C 0.07 0.80 3.92 -25.96 -0.10 0.70 16 3 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 4 C -0.15 -1.64 6.63 -25.16 -0.17 -1.80 16 5 C -0.15 -1.96 5.57 -25.16 -0.14 -2.10 16 6 C 0.06 0.97 2.84 -27.11 -0.08 0.90 16 7 H 0.09 1.20 7.06 -51.93 -0.37 0.83 16 8 C 0.51 11.07 6.92 -10.98 -0.08 11.00 16 9 O -0.52 -13.83 16.20 -13.47 -0.22 -14.05 16 10 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 11 C 0.22 5.42 4.19 -5.20 -0.02 5.40 16 12 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 13 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 16 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 20 C 0.13 2.09 5.37 -4.04 -0.02 2.07 16 21 C -0.17 -2.25 5.37 -90.62 -0.49 -2.74 16 22 C -0.18 -2.09 10.18 -26.73 -0.27 -2.36 16 23 C -0.18 -1.81 10.25 -26.73 -0.27 -2.09 16 24 O -0.34 -5.99 10.62 -54.27 -0.58 -6.56 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 31 H 0.09 0.91 6.60 -51.93 -0.34 0.57 16 32 H 0.04 1.05 6.54 -51.93 -0.34 0.71 16 33 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.08 1.02 4.58 -51.93 -0.24 0.78 16 36 H 0.09 1.45 7.79 -51.93 -0.40 1.04 16 37 H 0.10 1.41 7.91 -51.93 -0.41 1.00 16 38 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -35.09 330.88 -8.56 -43.65 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.70 Total: 0.35 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.72 Total: -5.75 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.34 Total: -39.73 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.79 Total: -20.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.09 -8.56 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152413247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.155 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds