Wall clock time and date at job start Mon Mar 30 2020 00:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.53820 * 2 1 4 4 C 1.53120 * 109.49938 * 239.90510 * 2 1 3 5 5 C 1.53123 * 109.16235 * 297.71532 * 4 2 1 6 6 C 1.53045 * 109.27632 * 302.34269 * 5 4 2 7 7 N 1.46847 * 109.52092 * 59.18200 * 6 5 4 8 8 C 1.46898 * 111.00041 * 174.15921 * 7 6 5 9 9 C 1.53009 * 109.46931 * 298.86745 * 8 7 6 10 10 C 1.50695 * 115.54929 * 304.72216 * 9 8 7 11 11 H 1.08001 * 119.99773 * 144.03304 * 10 9 8 12 12 C 1.37878 * 120.00334 * 324.04190 * 10 9 8 13 13 N 1.31519 * 119.99628 * 336.93853 * 12 10 9 14 14 Si 1.86799 * 120.00384 * 156.94548 * 12 10 9 15 15 H 1.48503 * 109.46656 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47305 * 119.99297 * 14 12 10 17 17 H 1.48496 * 109.47178 * 240.00026 * 14 12 10 18 18 C 1.52998 * 117.49443 * 159.05442 * 9 8 7 19 19 C 1.52996 * 117.49663 * 90.39277 * 9 8 7 20 20 C 1.46843 * 111.19726 * 298.25717 * 7 6 5 21 21 H 1.09004 * 109.46177 * 301.72417 * 20 7 6 22 22 C 1.50703 * 109.46398 * 181.76066 * 20 7 6 23 23 O 1.20832 * 119.99638 * 329.34099 * 22 20 7 24 24 O 1.34227 * 120.00228 * 149.34481 * 22 20 7 25 25 H 1.09008 * 109.46967 * 299.89425 * 1 2 3 26 26 H 1.08989 * 109.47372 * 59.89393 * 1 2 3 27 27 H 1.09001 * 109.47162 * 179.89728 * 1 2 3 28 28 H 1.08994 * 109.52468 * 57.61987 * 4 2 1 29 29 H 1.09002 * 109.52452 * 177.81057 * 4 2 1 30 30 H 1.08997 * 109.50201 * 182.40661 * 5 4 2 31 31 H 1.08995 * 109.53566 * 62.30195 * 5 4 2 32 32 H 1.08993 * 109.46641 * 299.16577 * 6 5 4 33 33 H 1.09002 * 109.46166 * 179.19531 * 6 5 4 34 34 H 1.09001 * 109.46953 * 58.86610 * 8 7 6 35 35 H 1.09000 * 109.47051 * 178.86751 * 8 7 6 36 36 H 0.96996 * 119.99678 * 184.25184 * 13 12 10 37 37 H 1.08993 * 117.50525 * 359.97438 * 18 9 8 38 38 H 1.09003 * 117.49527 * 145.02075 * 18 9 8 39 39 H 1.08998 * 117.50008 * 214.97734 * 19 9 8 40 40 H 1.09004 * 117.50162 * 359.97438 * 19 9 8 41 41 H 0.96706 * 116.99585 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0271 0.0000 4 6 2.0411 -0.7238 -1.2488 5 6 1.5748 -2.1818 -1.2109 6 6 2.0846 -2.8421 0.0722 7 7 1.5676 -2.1137 1.2377 8 6 1.9223 -2.7998 2.4872 9 6 1.3000 -4.1976 2.4958 10 6 -0.1919 -4.2462 2.2891 11 1 -0.6330 -5.0558 1.7267 12 6 -0.9937 -3.2569 2.8177 13 7 -0.5743 -2.5487 3.8435 14 14 -2.6758 -2.9227 2.0772 15 1 -2.9089 -3.8491 0.9402 16 1 -3.7220 -3.1328 3.1099 17 1 -2.7333 -1.5203 1.5922 18 6 1.9182 -5.2403 3.4295 19 6 2.1311 -5.3445 1.9172 20 6 2.0410 -0.7237 1.2479 21 1 3.1309 -0.7113 1.2543 22 6 1.5240 -0.0262 2.4798 23 8 0.4638 -0.3526 2.9587 24 8 2.2412 0.9577 3.0448 25 1 -0.3633 0.5122 0.8910 26 1 -0.3633 0.5154 -0.8889 27 1 -0.3633 -1.0277 -0.0018 28 1 1.6441 -0.2374 -2.1398 29 1 3.1304 -0.6902 -1.2691 30 1 1.9714 -2.7132 -2.0760 31 1 0.4856 -2.2167 -1.2302 32 1 3.1742 -2.8198 0.0840 33 1 1.7422 -3.8763 0.1091 34 1 3.0066 -2.8844 2.5600 35 1 1.5446 -2.2287 3.3353 36 1 -1.1618 -1.8953 4.2544 37 1 2.7683 -4.9307 4.0372 38 1 1.2457 -5.9616 3.8938 39 1 1.5988 -6.1343 1.3872 40 1 3.1211 -5.1031 1.5299 41 1 1.8684 1.3756 3.8332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235302011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:10 Heat of formation + Delta-G solvation = -51.657002 kcal Electronic energy + Delta-G solvation = -22940.165501 eV Core-core repulsion = 19821.221805 eV Total energy + Delta-G solvation = -3118.943695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19768 -38.17975 -36.40482 -35.31295 -32.91165 -31.82524 -31.30406 -27.00459 -26.13487 -25.11903 -23.70029 -22.08171 -21.13446 -20.60474 -18.77814 -18.19725 -17.30100 -16.34617 -15.91025 -15.14405 -14.89890 -14.46333 -14.28640 -13.71876 -13.58350 -13.25620 -12.98190 -12.67513 -12.56083 -12.34627 -11.55028 -11.36526 -11.31636 -11.16411 -10.82572 -10.68775 -10.66286 -10.49775 -10.40724 -10.30833 -10.16965 -9.91374 -9.84167 -9.39838 -9.08906 -8.96207 -8.40471 -7.70949 -7.31692 -5.79258 -3.66604 2.99597 3.48219 3.51564 3.60102 3.60723 4.58111 4.68061 5.01614 5.20668 5.22401 5.30103 5.52285 5.57552 5.76170 5.87062 5.92105 5.97160 5.99720 6.07180 6.18610 6.21334 6.26539 6.32203 6.39086 6.52066 6.58444 6.67682 6.71439 6.74965 6.78621 7.03030 7.05252 7.14516 7.20367 7.43252 7.61778 7.97866 8.05661 8.21074 8.68195 8.71824 9.20084 9.89384 11.29189 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.010819 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.118593 B = 2587.343140 C = 2892.628335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.121 4.121 6 C 0.061 3.939 7 N -0.481 5.481 8 C 0.090 3.910 9 C 0.079 3.921 10 C -0.504 4.504 11 H 0.052 0.948 12 C 0.109 3.891 13 N -0.834 5.834 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.281 1.281 18 C -0.208 4.208 19 C -0.221 4.221 20 C 0.106 3.894 21 H 0.051 0.949 22 C 0.454 3.546 23 O -0.431 6.431 24 O -0.537 6.537 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.015 0.985 33 H 0.098 0.902 34 H -0.013 1.013 35 H 0.115 0.885 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 6.409 -6.598 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.066 4.066 7 N -0.207 5.207 8 C -0.036 4.036 9 C 0.078 3.922 10 C -0.540 4.540 11 H 0.070 0.930 12 C -0.099 4.099 13 N -0.467 5.467 14 Si 0.704 3.296 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.207 1.207 18 C -0.246 4.246 19 C -0.259 4.259 20 C -0.004 4.004 21 H 0.068 0.932 22 C 0.291 3.709 23 O -0.311 6.311 24 O -0.350 6.350 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.116 0.884 34 H 0.005 0.995 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.623 6.334 -6.731 10.819 hybrid contribution -0.103 0.422 0.323 0.541 sum 5.521 6.756 -6.408 10.825 Atomic orbital electron populations 1.21833 0.93646 1.04275 1.00282 1.21061 0.97627 0.97811 0.92856 0.91241 1.21590 0.99904 0.96543 0.96785 1.21678 1.02504 0.94585 0.97075 1.22153 0.95223 0.99849 0.89423 1.61559 1.58558 0.97390 1.03175 1.21883 0.92363 0.97275 0.92091 1.18768 0.93593 0.84749 0.95123 1.20009 0.88368 1.09406 1.36230 0.92969 1.24556 0.96950 0.94900 0.93500 1.69790 1.36048 1.22744 1.18105 0.86869 0.84817 0.78432 0.79501 1.20351 1.22328 1.20657 1.22993 1.02672 1.07981 0.90995 1.22983 1.00284 1.05990 0.96605 1.21074 0.97120 0.91924 0.90304 0.93171 1.23294 0.84072 0.78150 0.85361 1.90942 1.21046 1.59149 1.59983 1.84510 1.54481 1.50177 1.45817 0.93015 0.93892 0.89818 0.91849 0.92483 0.92199 0.90452 0.96701 0.88386 0.99460 0.86720 0.92971 0.92402 0.90443 0.90835 0.92083 0.74210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.37 37.16 0.31 -2.18 16 2 C -0.07 -1.16 2.74 -90.54 -0.25 -1.40 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.49 5.51 -26.61 -0.15 -1.64 16 5 C -0.12 -1.83 5.74 -26.64 -0.15 -1.98 16 6 C 0.06 1.10 5.05 -3.83 -0.02 1.09 16 7 N -0.48 -9.92 3.24 -228.07 -0.74 -10.66 16 8 C 0.09 2.10 3.87 -3.82 -0.01 2.08 16 9 C 0.08 1.92 1.19 -155.66 -0.19 1.74 16 10 C -0.50 -13.73 8.66 -34.44 -0.30 -14.02 16 11 H 0.05 1.46 7.92 -52.49 -0.42 1.05 16 12 C 0.11 3.00 5.02 -17.82 -0.09 2.91 16 13 N -0.83 -23.37 9.31 55.43 0.52 -22.85 16 14 Si 0.87 22.05 29.60 -169.99 -5.03 17.02 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 C -0.21 -4.84 9.96 -26.69 -0.27 -5.11 16 19 C -0.22 -4.80 8.04 -26.69 -0.21 -5.01 16 20 C 0.11 1.92 2.04 -68.87 -0.14 1.78 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 C 0.45 8.72 5.46 36.01 0.20 8.92 16 23 O -0.43 -9.89 12.85 -18.75 -0.24 -10.14 16 24 O -0.54 -8.35 13.42 -39.25 -0.53 -8.88 16 25 H 0.05 0.99 6.61 -51.92 -0.34 0.64 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.69 6.01 -51.93 -0.31 1.38 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.29 6.58 -51.93 -0.34 0.95 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 1.95 5.64 -51.93 -0.29 1.66 16 34 H -0.01 -0.28 8.10 -51.93 -0.42 -0.70 16 35 H 0.12 2.98 4.21 -51.93 -0.22 2.76 16 36 H 0.26 7.26 8.23 -40.82 -0.34 6.92 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.22 8.13 -51.93 -0.42 0.79 16 41 H 0.40 4.64 9.10 45.56 0.41 5.06 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -29.83 313.32 -8.28 -38.11 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.71 Total: 5.51 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.27 Total: -12.84 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.22 Total: -33.51 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.77 Total: -19.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.83 -8.28 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235302011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.551 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds