Wall clock time and date at job start Mon Mar 30 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.53903 * 2 1 4 4 C 1.53035 * 109.50363 * 239.89979 * 2 1 3 5 5 N 1.46851 * 109.52462 * 180.88284 * 4 2 1 6 6 C 1.46900 * 111.00156 * 185.83977 * 5 4 2 7 7 C 1.52992 * 109.47118 * 161.07879 * 6 5 4 8 8 C 1.50698 * 115.55174 * 155.40344 * 7 6 5 9 9 H 1.07998 * 120.00418 * 144.78438 * 8 7 6 10 10 C 1.37883 * 119.99753 * 324.79165 * 8 7 6 11 11 N 1.31521 * 119.99797 * 160.26279 * 10 8 7 12 12 Si 1.86795 * 119.99981 * 340.25779 * 10 8 7 13 13 H 1.48508 * 109.46983 * 95.45734 * 12 10 8 14 14 H 1.48499 * 109.47121 * 215.45494 * 12 10 8 15 15 H 1.48499 * 109.47275 * 335.46067 * 12 10 8 16 16 C 1.53004 * 117.50066 * 9.69834 * 7 6 5 17 17 C 1.53001 * 117.50015 * 301.07367 * 7 6 5 18 18 C 1.46845 * 111.19786 * 61.74345 * 5 4 2 19 19 C 1.53037 * 109.52030 * 298.25702 * 18 5 4 20 20 C 1.53116 * 109.28052 * 59.18336 * 19 18 5 21 21 H 1.09005 * 109.52534 * 62.24757 * 20 19 18 22 22 C 1.50703 * 109.57833 * 182.40571 * 20 19 18 23 23 O 1.20822 * 119.99872 * 119.83773 * 22 20 19 24 24 O 1.34230 * 119.99989 * 299.84071 * 22 20 19 25 25 H 1.09001 * 109.47408 * 299.90441 * 1 2 3 26 26 H 1.09002 * 109.47320 * 59.90086 * 1 2 3 27 27 H 1.08998 * 109.47394 * 179.90334 * 1 2 3 28 28 H 1.09005 * 109.46430 * 300.89976 * 4 2 1 29 29 H 1.08998 * 109.46289 * 60.86468 * 4 2 1 30 30 H 1.08996 * 109.47369 * 281.08174 * 6 5 4 31 31 H 1.09007 * 109.47051 * 41.08059 * 6 5 4 32 32 H 0.97001 * 119.99711 * 179.97438 * 11 10 8 33 33 H 1.09001 * 117.49359 * 359.97438 * 16 7 6 34 34 H 1.08999 * 117.49794 * 145.02210 * 16 7 6 35 35 H 1.09000 * 117.50075 * 214.98064 * 17 7 6 36 36 H 1.08995 * 117.50159 * 359.97438 * 17 7 6 37 37 H 1.09000 * 109.46414 * 58.27447 * 18 5 4 38 38 H 1.08996 * 109.46103 * 178.25798 * 18 5 4 39 39 H 1.09004 * 109.50703 * 299.23757 * 19 18 5 40 40 H 1.09006 * 109.50124 * 179.12094 * 19 18 5 41 41 H 0.96698 * 116.99850 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7422 -1.2378 6 6 4.0372 -1.3060 -2.4874 7 6 5.5005 -0.8920 -2.6554 8 6 6.3389 -1.8022 -3.5154 9 1 7.1141 -1.3888 -4.1435 10 6 6.1161 -3.1628 -3.5005 11 7 6.5455 -3.9103 -4.4938 12 14 5.2045 -3.9443 -2.0697 13 1 3.7663 -4.0803 -2.4140 14 1 5.7761 -5.2866 -1.7924 15 1 5.3462 -3.0875 -0.8651 16 6 6.1846 -0.2159 -1.4655 17 6 5.8102 0.6057 -2.7007 18 6 4.0229 -1.4731 -0.0724 19 6 3.5711 -0.7720 1.2107 20 6 2.0412 -0.7238 1.2488 21 1 1.6451 -1.7392 1.2690 22 6 1.5897 0.0174 2.4808 23 8 0.9251 1.0206 2.3726 24 8 1.9260 -0.4368 3.6983 25 1 -0.3634 0.5123 0.8908 26 1 -0.3634 0.5154 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.6647 -1.7465 -1.2544 29 1 1.6905 -0.2023 -2.1389 30 1 3.9690 -2.3933 -2.4528 31 1 3.4548 -0.9319 -3.3294 32 1 6.3891 -4.8676 -4.4831 33 1 5.5919 -0.0658 -0.5630 34 1 7.2412 -0.4296 -1.3044 35 1 6.6206 0.9326 -3.3523 36 1 4.9715 1.2960 -2.6112 37 1 3.6374 -2.4926 -0.0842 38 1 5.1120 -1.4962 -0.1092 39 1 3.9678 0.2431 1.2298 40 1 3.9394 -1.3236 2.0758 41 1 1.6137 0.0726 4.4586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304336819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:13 Heat of formation + Delta-G solvation = -65.688483 kcal Electronic energy + Delta-G solvation = -21855.837209 eV Core-core repulsion = 18736.285063 eV Total energy + Delta-G solvation = -3119.552146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77393 -40.32582 -38.10549 -37.05649 -34.66931 -34.20446 -33.15192 -29.16808 -28.08162 -27.31700 -24.81315 -23.35570 -22.89181 -22.24773 -20.84541 -20.66238 -18.98992 -18.26132 -17.78608 -17.41814 -16.65951 -16.29594 -16.16253 -15.73874 -15.16386 -14.86029 -14.67980 -14.57389 -14.14414 -13.86423 -13.66583 -13.46888 -13.02080 -12.85968 -12.67763 -12.57482 -12.39157 -12.28650 -11.93488 -11.90543 -11.76078 -11.53567 -11.43199 -11.27863 -11.02914 -10.78060 -10.47451 -10.17953 -9.14664 -8.34899 -6.27052 1.20987 1.24817 1.38464 1.49418 2.13150 2.33090 2.79616 2.99593 3.50478 3.56988 3.72103 3.95489 4.02482 4.24089 4.32809 4.35542 4.41605 4.43201 4.55239 4.58830 4.65346 4.68294 4.78486 4.79860 4.85251 4.94070 5.05172 5.10444 5.14503 5.18482 5.26672 5.32098 5.36994 5.46841 5.67478 5.70145 5.72901 6.07323 6.21720 6.39290 6.73120 7.04060 7.30390 8.80197 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.006014 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.268004 B = 4654.631294 C = 4789.870661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.062 4.062 3 H 0.077 0.923 4 C 0.058 3.942 5 N -0.533 5.533 6 C 0.090 3.910 7 C -0.011 4.011 8 C -0.496 4.496 9 H 0.027 0.973 10 C 0.019 3.981 11 N -0.938 5.938 12 Si 0.935 3.065 13 H -0.280 1.280 14 H -0.312 1.312 15 H -0.203 1.203 16 C -0.190 4.190 17 C -0.171 4.171 18 C 0.031 3.969 19 C -0.097 4.097 20 C -0.078 4.078 21 H 0.117 0.883 22 C 0.495 3.505 23 O -0.537 6.537 24 O -0.511 6.511 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.070 0.930 32 H 0.265 0.735 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.028 0.972 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.724 5.775 16.659 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 H 0.095 0.905 4 C -0.070 4.070 5 N -0.257 5.257 6 C -0.037 4.037 7 C -0.012 4.012 8 C -0.534 4.534 9 H 0.045 0.955 10 C -0.179 4.179 11 N -0.577 5.577 12 Si 0.763 3.237 13 H -0.208 1.208 14 H -0.241 1.241 15 H -0.125 1.125 16 C -0.227 4.227 17 C -0.208 4.208 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.097 4.097 21 H 0.135 0.865 22 C 0.338 3.662 23 O -0.427 6.427 24 O -0.324 6.324 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.575 6.150 16.259 21.455 hybrid contribution -0.306 -1.215 0.053 1.254 sum -12.881 4.935 16.312 21.363 Atomic orbital electron populations 1.21934 0.93486 1.02217 1.03190 1.20945 0.96365 0.99614 0.91213 0.90460 1.22241 0.86774 0.99096 0.98885 1.61905 1.07951 1.54008 1.01819 1.21716 0.94978 0.95597 0.91456 1.19159 0.91713 0.92081 0.98265 1.20586 1.17621 0.91365 1.23781 0.95464 1.25884 0.96602 0.97753 0.97675 1.70155 1.49508 1.06518 1.31496 0.86351 0.76886 0.77055 0.83429 1.20772 1.24084 1.12497 1.23351 0.99601 1.06243 0.93532 1.22663 1.02170 0.94387 1.01593 1.22801 1.02053 0.94570 0.90150 1.21561 0.91920 1.02595 0.97438 1.21226 0.98215 1.00913 0.89396 0.86543 1.23379 0.75287 0.82358 0.85157 1.90670 1.37929 1.26582 1.87561 1.84516 1.73085 1.57871 1.16968 0.91418 0.91756 0.92254 0.94850 0.89775 0.96197 0.91123 0.92578 0.86572 0.91858 0.92095 0.88611 0.95381 0.88567 0.90518 0.88433 0.71179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.91 71.98 0.64 -2.36 16 2 C -0.06 -1.40 2.02 -10.74 -0.02 -1.42 16 3 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 4 C 0.06 1.51 4.71 86.32 0.41 1.92 16 5 N -0.53 -16.83 3.79 -896.37 -3.40 -20.23 16 6 C 0.09 3.57 4.58 86.30 0.39 3.97 16 7 C -0.01 -0.49 1.70 -52.93 -0.09 -0.58 16 8 C -0.50 -28.26 9.52 25.60 0.24 -28.02 16 9 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 10 C 0.02 1.10 5.36 84.65 0.45 1.55 16 11 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 12 Si 0.93 42.81 23.30 68.60 1.60 44.41 16 13 H -0.28 -12.43 6.64 99.48 0.66 -11.77 16 14 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 15 H -0.20 -8.00 3.79 99.48 0.38 -7.62 16 16 C -0.19 -7.49 8.15 30.60 0.25 -7.24 16 17 C -0.17 -6.93 9.86 30.60 0.30 -6.63 16 18 C 0.03 0.92 2.72 86.33 0.23 1.15 16 19 C -0.10 -2.14 5.30 30.65 0.16 -1.98 16 20 C -0.08 -1.60 2.20 -11.46 -0.03 -1.62 16 21 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 22 C 0.49 9.79 7.35 71.24 0.52 10.31 16 23 O -0.54 -13.35 14.58 21.98 0.32 -13.03 16 24 O -0.51 -7.30 13.36 -51.41 -0.69 -7.99 16 25 H 0.07 1.48 5.74 -2.39 -0.01 1.47 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 2.14 7.94 -2.39 -0.02 2.12 16 30 H 0.02 0.88 2.37 -2.39 -0.01 0.88 16 31 H 0.07 2.78 7.81 -2.38 -0.02 2.77 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.12 3.99 4.94 -2.39 -0.01 3.98 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.03 0.84 6.77 -2.39 -0.02 0.82 16 38 H 0.10 3.15 3.79 -2.39 -0.01 3.14 16 39 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.43 2.43 9.10 -74.06 -0.67 1.76 16 Total: -1.00 -68.24 305.05 1.59 -66.64 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.01 Total: 19.18 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 3.47 Total: -30.94 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.10 Total: -78.27 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.37 Total: -21.02 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.60 Total: 44.41 kcal Total: -68.24 1.59 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304336819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.954 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds