Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.50244 * 2 1 4 4 C 1.53040 * 109.50136 * 239.92461 * 2 1 3 5 5 N 1.46845 * 109.52222 * 299.19619 * 4 2 1 6 6 C 1.46906 * 110.99910 * 174.16138 * 5 4 2 7 7 C 1.53003 * 109.47136 * 199.75371 * 6 5 4 8 8 C 1.50700 * 115.54546 * 269.49546 * 7 6 5 9 9 H 1.08005 * 119.99700 * 117.41223 * 8 7 6 10 10 C 1.37872 * 120.00179 * 297.40669 * 8 7 6 11 11 N 1.31521 * 120.00139 * 164.11274 * 10 8 7 12 12 Si 1.86801 * 120.00159 * 344.10477 * 10 8 7 13 13 H 1.48505 * 109.46568 * 84.03913 * 12 10 8 14 14 H 1.48497 * 109.47595 * 204.04081 * 12 10 8 15 15 H 1.48499 * 109.47177 * 324.04689 * 12 10 8 16 16 C 1.52996 * 117.49774 * 123.78860 * 7 6 5 17 17 C 1.52998 * 117.49860 * 55.16363 * 7 6 5 18 18 C 1.46843 * 111.20216 * 298.26075 * 5 4 2 19 19 C 1.53033 * 109.51304 * 61.74459 * 18 5 4 20 20 C 1.53117 * 109.53845 * 120.10105 * 2 1 3 21 21 H 1.08995 * 109.52572 * 182.27524 * 20 2 1 22 22 C 1.50704 * 109.52017 * 302.40217 * 20 2 1 23 23 O 1.20825 * 120.00088 * 359.97438 * 22 20 2 24 24 O 1.34224 * 119.99523 * 179.97438 * 22 20 2 25 25 H 1.09002 * 109.47358 * 187.83720 * 1 2 3 26 26 H 1.08997 * 109.47464 * 307.84142 * 1 2 3 27 27 H 1.09007 * 109.47477 * 67.83905 * 1 2 3 28 28 H 1.09003 * 109.46399 * 179.18022 * 4 2 1 29 29 H 1.09007 * 109.46467 * 59.21616 * 4 2 1 30 30 H 1.09004 * 109.46974 * 319.75356 * 6 5 4 31 31 H 1.08997 * 109.47105 * 79.74888 * 6 5 4 32 32 H 0.96993 * 120.00033 * 180.02562 * 11 10 8 33 33 H 1.08996 * 117.49901 * 359.97438 * 16 7 6 34 34 H 1.09004 * 117.49720 * 145.01757 * 16 7 6 35 35 H 1.08997 * 117.49530 * 214.97617 * 17 7 6 36 36 H 1.08991 * 117.49973 * 0.02562 * 17 7 6 37 37 H 1.08997 * 109.46347 * 181.76417 * 18 5 4 38 38 H 1.09001 * 109.45818 * 301.73557 * 18 5 4 39 39 H 1.09002 * 109.50374 * 60.76307 * 19 18 5 40 40 H 1.09007 * 109.50462 * 180.87622 * 19 18 5 41 41 H 0.96705 * 116.99568 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7229 -1.2484 5 7 1.5682 -2.1132 -1.2382 6 6 1.9229 -2.7990 -2.4881 7 6 1.0299 -4.0285 -2.6664 8 6 1.5636 -5.3099 -2.0797 9 1 1.0243 -5.8065 -1.2866 10 6 2.7403 -5.8484 -2.5555 11 7 3.3701 -6.7702 -1.8603 12 14 3.4399 -5.2689 -4.1878 13 1 4.2344 -4.0325 -3.9746 14 1 4.3136 -6.3270 -4.7555 15 1 2.3280 -4.9864 -5.1306 16 6 0.2138 -4.1277 -3.9567 17 6 -0.4844 -3.8127 -2.6322 18 6 2.0860 -2.8417 -0.0731 19 6 1.5763 -2.1819 1.2102 20 6 2.0420 -0.7237 1.2484 21 1 3.1312 -0.6884 1.2689 22 6 1.4931 -0.0518 2.4807 23 8 0.7670 0.9079 2.3728 24 8 1.8109 -0.5197 3.6979 25 1 -0.3634 -1.0181 0.1401 26 1 -0.3634 0.6304 0.8115 27 1 -0.3634 0.3877 -0.9518 28 1 3.1308 -0.7099 -1.2552 29 1 1.6662 -0.2185 -2.1391 30 1 1.7786 -2.1201 -3.3286 31 1 2.9666 -3.1106 -2.4479 32 1 4.1981 -7.1488 -2.1948 33 1 0.3128 -3.3168 -4.6784 34 1 0.0629 -5.1200 -4.3817 35 1 -1.0946 -4.5978 -2.1859 36 1 -0.8444 -2.7948 -2.4832 37 1 1.7444 -3.8760 -0.1102 38 1 3.1757 -2.8185 -0.0853 39 1 0.4870 -2.2168 1.2294 40 1 1.9733 -2.7133 2.0752 41 1 1.4344 -0.0560 4.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304336822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = -66.236953 kcal Electronic energy + Delta-G solvation = -21777.705962 eV Core-core repulsion = 18658.130033 eV Total energy + Delta-G solvation = -3119.575929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71165 -38.69753 -36.72005 -36.05433 -33.15533 -32.14411 -31.38400 -27.28658 -26.84666 -25.45165 -23.36662 -22.43739 -21.36778 -21.20021 -18.78685 -18.45302 -18.03261 -16.73749 -16.23284 -15.89448 -15.08810 -14.91961 -14.47638 -14.14125 -13.70648 -13.51729 -13.29987 -13.04871 -12.71548 -12.43600 -12.24012 -11.69642 -11.65521 -11.34982 -11.22706 -11.06343 -10.94688 -10.69064 -10.65991 -10.36494 -10.33048 -10.17127 -10.03355 -9.80251 -9.38077 -8.98510 -8.62625 -8.25960 -7.59628 -6.14644 -4.08489 2.21061 3.05526 3.26030 3.37646 3.46581 4.38216 4.43666 4.65644 4.89473 5.03182 5.10176 5.33332 5.40182 5.44776 5.53556 5.73258 5.80263 5.85015 5.92953 6.00874 6.05970 6.11048 6.19776 6.27394 6.32219 6.36172 6.41473 6.53758 6.56406 6.68579 6.69373 6.81022 6.90863 6.92954 7.19312 7.29404 7.68938 7.83936 7.86272 7.90822 8.53134 8.92521 9.52843 10.96839 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.005891 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.064174 B = 4752.060409 C = 5135.559222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 H 0.072 0.928 4 C 0.056 3.944 5 N -0.522 5.522 6 C 0.089 3.911 7 C 0.006 3.994 8 C -0.483 4.483 9 H 0.075 0.925 10 C 0.081 3.919 11 N -0.891 5.891 12 Si 0.864 3.136 13 H -0.279 1.279 14 H -0.294 1.294 15 H -0.253 1.253 16 C -0.202 4.202 17 C -0.162 4.162 18 C 0.059 3.941 19 C -0.107 4.107 20 C -0.078 4.078 21 H 0.102 0.898 22 C 0.485 3.515 23 O -0.514 6.514 24 O -0.516 6.516 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.027 0.973 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 12.444 5.687 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 H 0.090 0.910 4 C -0.072 4.072 5 N -0.246 5.246 6 C -0.038 4.038 7 C 0.005 3.995 8 C -0.520 4.520 9 H 0.093 0.907 10 C -0.122 4.122 11 N -0.528 5.528 12 Si 0.691 3.309 13 H -0.205 1.205 14 H -0.221 1.221 15 H -0.177 1.177 16 C -0.241 4.241 17 C -0.199 4.199 18 C -0.069 4.069 19 C -0.145 4.145 20 C -0.097 4.097 21 H 0.120 0.880 22 C 0.328 3.672 23 O -0.402 6.402 24 O -0.327 6.327 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.260 12.370 5.355 13.667 hybrid contribution 1.259 0.563 -0.491 1.463 sum -1.002 12.932 4.865 13.853 Atomic orbital electron populations 1.21989 0.93722 1.03096 1.01819 1.21003 0.97937 0.97787 0.91856 0.90981 1.22161 0.96843 0.90978 0.97235 1.61877 1.59436 1.00260 1.03022 1.21944 0.98005 0.94484 0.89392 1.19313 0.89504 0.94382 0.96312 1.20283 1.06934 1.05005 1.19805 0.90654 1.24904 0.95948 0.94745 0.96606 1.69970 1.16601 1.29192 1.37015 0.87078 0.79442 0.78058 0.86284 1.20545 1.22066 1.17719 1.23101 1.09274 1.00489 0.91201 1.22541 0.96852 0.99995 1.00528 1.22187 0.96603 1.00356 0.87722 1.21699 1.02349 0.91146 0.99270 1.21250 1.01731 0.97664 0.89045 0.88010 1.23718 0.77448 0.81378 0.84660 1.90633 1.35155 1.27415 1.87018 1.84592 1.70829 1.60375 1.16944 0.91379 0.91368 0.93199 0.95557 0.90827 0.93399 0.94313 0.92667 0.91800 0.90008 0.90555 0.90495 0.86778 0.95476 0.90418 0.90668 0.73728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.34 37.15 0.31 -1.79 16 2 C -0.07 -0.90 2.42 -90.54 -0.22 -1.12 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.06 0.84 4.86 -3.83 -0.02 0.82 16 5 N -0.52 -9.19 3.80 -234.66 -0.89 -10.08 16 6 C 0.09 1.81 4.29 -3.82 -0.02 1.79 16 7 C 0.01 0.14 0.74 -155.66 -0.12 0.02 16 8 C -0.48 -12.67 7.60 -34.44 -0.26 -12.93 16 9 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 10 C 0.08 2.20 5.30 -17.82 -0.09 2.11 16 11 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 12 Si 0.86 20.79 25.56 -169.99 -4.35 16.44 16 13 H -0.28 -6.58 6.80 56.52 0.38 -6.20 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.25 -5.87 6.08 56.52 0.34 -5.52 16 16 C -0.20 -4.24 8.00 -26.73 -0.21 -4.46 16 17 C -0.16 -3.27 9.73 -26.73 -0.26 -3.53 16 18 C 0.06 1.05 5.24 -3.84 -0.02 1.03 16 19 C -0.11 -1.55 4.97 -26.65 -0.13 -1.68 16 20 C -0.08 -1.01 2.48 -91.65 -0.23 -1.24 16 21 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 22 C 0.48 6.15 7.34 36.01 0.26 6.41 16 23 O -0.51 -7.55 14.33 -18.75 -0.27 -7.81 16 24 O -0.52 -5.31 13.36 -39.24 -0.52 -5.84 16 25 H 0.07 1.04 5.89 -51.93 -0.31 0.73 16 26 H 0.07 1.00 5.58 -51.93 -0.29 0.71 16 27 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.05 7.93 -51.93 -0.41 0.63 16 30 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 31 H 0.04 0.87 5.91 -51.93 -0.31 0.56 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.23 8.03 -51.93 -0.42 0.82 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.11 2.43 6.08 -51.93 -0.32 2.11 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.16 6.42 -51.93 -0.33 0.83 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.40 2.35 9.10 45.56 0.41 2.77 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -29.31 314.40 -7.32 -36.62 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.79 Total: 5.59 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.01 Total: -14.57 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.12 Total: -35.17 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.79 Total: -13.65 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.35 Total: 16.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.31 -7.32 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304336822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.613 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds