Wall clock time and date at job start Mon Mar 30 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50067 * 2 1 4 4 C 1.53033 * 109.50578 * 120.07848 * 2 1 3 5 5 N 1.46852 * 109.52380 * 179.16019 * 4 2 1 6 6 C 1.46894 * 110.99879 * 174.16435 * 5 4 2 7 7 C 1.53001 * 109.47083 * 176.19852 * 6 5 4 8 8 C 1.50705 * 115.55125 * 54.20799 * 7 6 5 9 9 H 1.07994 * 120.00134 * 219.85749 * 8 7 6 10 10 C 1.37878 * 119.99823 * 40.13224 * 8 7 6 11 11 N 1.31521 * 119.99770 * 9.81223 * 10 8 7 12 12 Si 1.86800 * 120.00370 * 189.80931 * 10 8 7 13 13 H 1.48500 * 109.46689 * 90.00007 * 12 10 8 14 14 H 1.48495 * 109.47289 * 209.99849 * 12 10 8 15 15 H 1.48497 * 109.46910 * 330.00521 * 12 10 8 16 16 C 1.52997 * 117.51861 * 199.90984 * 7 6 5 17 17 C 1.52994 * 117.49879 * 268.54078 * 7 6 5 18 18 C 1.46848 * 111.19619 * 298.25592 * 5 4 2 19 19 C 1.53040 * 109.52029 * 61.74432 * 18 5 4 20 20 C 1.53121 * 109.53303 * 239.90425 * 2 1 3 21 21 H 1.09006 * 109.52109 * 302.28443 * 20 2 1 22 22 C 1.50693 * 109.52495 * 62.47677 * 20 2 1 23 23 O 1.20833 * 120.00154 * 359.97438 * 22 20 2 24 24 O 1.34233 * 120.00425 * 179.97438 * 22 20 2 25 25 H 1.09001 * 109.46731 * 299.91950 * 1 2 3 26 26 H 1.09001 * 109.47414 * 59.91863 * 1 2 3 27 27 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46379 * 59.14242 * 4 2 1 29 29 H 1.09003 * 109.46467 * 299.17438 * 4 2 1 30 30 H 1.09000 * 109.47386 * 56.19574 * 6 5 4 31 31 H 1.09005 * 109.47327 * 296.19462 * 6 5 4 32 32 H 0.97003 * 119.99816 * 184.99776 * 11 10 8 33 33 H 1.09004 * 117.50058 * 214.96440 * 16 7 6 34 34 H 1.08998 * 117.50335 * 359.97438 * 16 7 6 35 35 H 1.09005 * 117.50134 * 359.97438 * 17 7 6 36 36 H 1.09002 * 117.50321 * 144.99579 * 17 7 6 37 37 H 1.08996 * 109.45951 * 181.75293 * 18 5 4 38 38 H 1.09002 * 109.46788 * 301.73069 * 18 5 4 39 39 H 1.09004 * 109.50230 * 180.88029 * 19 18 5 40 40 H 1.09001 * 109.54140 * 60.78021 * 19 18 5 41 41 H 0.96697 * 117.00551 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2483 5 7 3.5094 -0.7408 1.2385 6 6 4.0372 -1.3041 2.4882 7 6 5.5622 -1.3939 2.4030 8 6 6.2706 -0.1098 2.0561 9 1 7.1158 -0.1238 1.3840 10 6 5.8432 1.0823 2.6014 11 7 4.9495 1.0811 3.5663 12 14 6.5335 2.6991 1.9698 13 1 5.6904 3.1942 0.8521 14 1 6.5367 3.6987 3.0680 15 1 7.9221 2.4895 1.4871 16 6 6.2686 -2.3533 3.3630 17 6 6.1648 -2.6977 1.8759 18 6 4.0238 -1.4715 0.0733 19 6 3.5720 -0.7708 -1.2101 20 6 2.0420 -0.7236 -1.2485 21 1 1.6466 -1.7392 -1.2687 22 6 1.5918 0.0180 -2.4807 23 8 0.9289 1.0225 -2.3728 24 8 1.9272 -0.4370 -3.6981 25 1 -0.3633 0.5126 0.8907 26 1 -0.3634 0.5151 -0.8892 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6654 -1.7462 1.2546 29 1 1.6900 -0.2019 2.1390 30 1 3.6226 -2.3005 2.6414 31 1 3.7572 -0.6618 3.3232 32 1 4.5950 1.9200 3.9001 33 1 7.2457 -2.0557 3.7436 34 1 5.6470 -2.9204 4.0558 35 1 5.4748 -3.4917 1.5901 36 1 7.0735 -2.6267 1.2781 37 1 5.1129 -1.4940 0.1106 38 1 3.6389 -2.4913 0.0851 39 1 3.9408 -1.3223 -2.0750 40 1 3.9680 0.2445 -1.2299 41 1 1.6151 0.0722 -4.4586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304336825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:17 Heat of formation + Delta-G solvation = -85.705210 kcal Electronic energy + Delta-G solvation = -21867.745418 eV Core-core repulsion = 18747.325281 eV Total energy + Delta-G solvation = -3120.420136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67817 -39.90538 -38.05175 -37.05527 -34.41877 -33.98449 -32.95170 -28.33275 -27.85992 -27.13139 -24.69825 -23.20984 -22.82715 -22.16071 -20.67412 -20.49880 -18.97380 -18.03836 -17.67322 -16.72325 -16.52215 -16.16071 -15.87102 -15.42437 -15.22644 -14.79077 -14.56802 -14.39585 -13.87337 -13.45345 -13.39932 -13.23222 -12.84371 -12.76031 -12.68356 -12.49176 -12.41925 -12.20000 -12.19205 -11.94701 -11.78449 -11.63494 -11.32385 -11.20680 -10.91604 -10.88886 -10.33435 -9.84375 -8.72199 -7.92077 -5.97293 1.21656 1.44377 1.49350 1.52836 2.15168 2.53057 3.11299 3.35923 3.57397 3.77536 3.82767 4.04217 4.18127 4.36241 4.44501 4.48851 4.55346 4.57064 4.66045 4.74242 4.76589 4.78805 4.90032 4.91792 4.99414 5.00134 5.13186 5.21164 5.25004 5.30185 5.32286 5.43947 5.51958 5.60748 5.69176 5.73087 6.09040 6.45435 6.67118 6.73508 7.02176 7.04189 7.64810 9.10059 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.006966 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.787545 B = 4018.719853 C = 4463.484958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 H 0.053 0.947 4 C 0.069 3.931 5 N -0.527 5.527 6 C 0.116 3.884 7 C 0.036 3.964 8 C -0.485 4.485 9 H 0.042 0.958 10 C 0.054 3.946 11 N -0.891 5.891 12 Si 0.929 3.071 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.274 1.274 16 C -0.208 4.208 17 C -0.189 4.189 18 C 0.063 3.937 19 C -0.098 4.098 20 C -0.071 4.071 21 H 0.127 0.873 22 C 0.492 3.508 23 O -0.542 6.542 24 O -0.508 6.508 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.060 0.940 30 H -0.004 1.004 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.031 0.969 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 -6.127 -10.631 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.059 4.059 5 N -0.251 5.251 6 C -0.011 4.011 7 C 0.036 3.964 8 C -0.522 4.522 9 H 0.061 0.939 10 C -0.147 4.147 11 N -0.529 5.529 12 Si 0.757 3.243 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.199 1.199 16 C -0.247 4.247 17 C -0.226 4.226 18 C -0.064 4.064 19 C -0.136 4.136 20 C -0.090 4.090 21 H 0.144 0.856 22 C 0.336 3.664 23 O -0.432 6.432 24 O -0.322 6.322 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.796 -5.466 -10.141 13.910 hybrid contribution 0.060 0.724 -0.351 0.807 sum -7.737 -4.742 -10.492 13.872 Atomic orbital electron populations 1.21905 0.93291 1.02480 1.02716 1.20931 0.96446 0.98853 0.92249 0.92841 1.22018 0.88215 0.98357 0.97299 1.61595 1.06113 1.54985 1.02399 1.21391 0.93469 0.93950 0.92317 1.19008 0.91427 0.88430 0.97555 1.20440 1.14090 0.91380 1.26299 0.93947 1.25176 0.95414 1.00405 0.93727 1.69962 1.30975 1.26272 1.25646 0.86034 0.78683 0.81754 0.77862 1.21071 1.21738 1.19920 1.22951 1.02047 1.07437 0.92258 1.22930 1.02733 1.00977 0.95940 1.22044 1.01269 0.93776 0.89351 1.21532 0.91775 1.01639 0.98655 1.21180 0.98139 1.00933 0.88742 0.85571 1.23537 0.75107 0.82454 0.85302 1.90663 1.38291 1.26670 1.87617 1.84511 1.73134 1.57702 1.16818 0.92442 0.91627 0.91356 0.94419 0.92155 0.98571 0.90152 0.93626 0.91588 0.90862 0.89627 0.90565 0.90281 0.95050 0.88529 0.93110 0.71324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.91 71.98 0.64 -3.16 16 2 C -0.07 -2.03 2.02 -10.74 -0.02 -2.05 16 3 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 4 C 0.07 2.36 4.74 86.32 0.41 2.77 16 5 N -0.53 -21.29 4.45 -896.36 -3.99 -25.28 16 6 C 0.12 5.19 4.36 86.30 0.38 5.56 16 7 C 0.04 1.71 0.99 -52.93 -0.05 1.65 16 8 C -0.48 -25.62 8.17 25.60 0.21 -25.41 16 9 H 0.04 2.28 7.83 -2.91 -0.02 2.26 16 10 C 0.05 2.90 5.26 84.65 0.45 3.35 16 11 N -0.89 -49.31 10.97 21.45 0.24 -49.07 16 12 Si 0.93 44.11 29.55 68.60 2.03 46.14 16 13 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 15 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 16 C -0.21 -9.13 9.96 30.59 0.30 -8.83 16 17 C -0.19 -7.52 8.15 30.59 0.25 -7.27 16 18 C 0.06 2.20 4.74 86.33 0.41 2.61 16 19 C -0.10 -2.91 5.31 30.65 0.16 -2.75 16 20 C -0.07 -1.88 2.20 -11.46 -0.03 -1.90 16 21 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 22 C 0.49 12.67 7.34 71.23 0.52 13.20 16 23 O -0.54 -17.05 14.59 21.94 0.32 -16.73 16 24 O -0.51 -9.57 13.36 -51.44 -0.69 -10.26 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.81 5.75 -2.39 -0.01 1.80 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 30 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 31 H 0.08 4.13 6.10 -2.38 -0.01 4.11 16 32 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.08 3.11 5.28 -2.39 -0.01 3.09 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.43 4.24 9.10 -74.06 -0.67 3.56 16 Total: -1.00 -61.78 322.59 1.88 -59.90 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.34 Total: 17.52 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.63 Total: -22.22 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.75 Total: -74.35 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.37 Total: -26.99 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.78 1.88 -59.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304336825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.807 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds