Wall clock time and date at job start Mon Mar 30 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46939 * 2 1 4 4 C 1.42905 * 114.00364 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.55791 * 4.31225 * 4 3 2 6 6 C 1.53067 * 117.49806 * 218.60226 * 4 3 2 7 7 C 1.52994 * 117.50089 * 149.99404 * 4 3 2 8 8 H 1.09001 * 117.49681 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.50164 * 214.97965 * 7 4 3 10 10 O 1.21298 * 119.99987 * 0.09827 * 9 7 4 11 11 N 1.34779 * 120.00170 * 180.08681 * 9 7 4 12 12 C 1.37103 * 119.99794 * 180.02562 * 11 9 7 13 13 H 1.08001 * 119.99584 * 225.49716 * 12 11 9 14 14 C 1.38950 * 119.99961 * 45.50519 * 12 11 9 15 15 N 1.31417 * 119.99909 * 17.79579 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 198.07754 * 14 12 11 17 17 H 1.48491 * 109.47250 * 59.99728 * 16 14 12 18 18 H 1.48497 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46768 * 299.99576 * 16 14 12 20 20 C 1.46500 * 119.99817 * 0.02562 * 11 9 7 21 21 C 1.54266 * 110.02954 * 242.60555 * 20 11 9 22 22 C 1.54960 * 104.16044 * 217.13722 * 21 20 11 23 23 C 1.54894 * 102.77603 * 37.88998 * 22 21 20 24 24 C 1.53868 * 110.03003 * 125.39104 * 20 11 9 25 25 H 1.09001 * 109.47107 * 60.00203 * 1 2 3 26 26 H 1.09002 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47591 * 299.99870 * 1 2 3 28 28 H 1.08997 * 109.47444 * 239.99604 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99797 * 2 1 3 30 30 H 1.09001 * 117.51147 * 145.03365 * 6 4 3 31 31 H 1.09002 * 117.51480 * 359.97438 * 6 4 3 32 32 H 0.97000 * 120.00102 * 184.85466 * 15 14 12 33 33 H 1.08995 * 110.01612 * 4.00052 * 20 11 9 34 34 H 1.08998 * 110.48783 * 335.78436 * 21 20 11 35 35 H 1.09008 * 110.48268 * 98.42741 * 21 20 11 36 36 H 1.09003 * 110.71948 * 279.57829 * 22 21 20 37 37 H 1.08999 * 110.92102 * 156.30080 * 22 21 20 38 38 H 1.09000 * 110.48492 * 203.40634 * 23 22 21 39 39 H 1.08996 * 110.59773 * 80.81890 * 23 22 21 40 40 H 1.09005 * 110.03181 * 238.56182 * 24 20 11 41 41 H 1.09000 * 110.03992 * 359.94665 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9772 0.5199 -0.0730 6 6 4.0511 2.5740 0.8478 7 6 4.0425 2.6875 -0.6780 8 1 3.3583 3.4085 -1.1253 9 6 5.3542 2.5038 -1.3968 10 8 5.8838 1.4129 -1.4232 11 7 5.9388 3.5517 -2.0106 12 6 7.1320 3.3844 -2.6649 13 1 7.9295 4.0991 -2.5248 14 6 7.3150 2.2955 -3.5085 15 7 6.2745 1.6300 -3.9574 16 14 9.0403 1.7729 -3.9980 17 1 9.8140 1.4182 -2.7813 18 1 8.9638 0.5941 -4.8978 19 1 9.7144 2.8916 -4.7048 20 6 5.2994 4.8694 -1.9784 21 6 4.9369 5.3158 -3.4099 22 6 5.2059 6.8419 -3.4107 23 6 6.4807 6.9654 -2.5396 24 6 6.2802 5.9178 -1.4250 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.0055 2.3664 1.3316 31 1 3.3726 3.2206 1.4042 32 1 6.4037 0.8285 -4.4884 33 1 4.4026 4.8339 -1.3600 34 1 5.5750 4.8158 -4.1386 35 1 3.8864 5.1126 -3.6183 36 1 4.3740 7.3803 -2.9565 37 1 5.3923 7.2037 -4.4218 38 1 6.5562 7.9659 -2.1136 39 1 7.3697 6.7333 -3.1259 40 1 5.8590 6.3919 -0.5385 41 1 7.2317 5.4462 -1.1794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331447478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:12 Heat of formation + Delta-G solvation = -51.888829 kcal Electronic energy + Delta-G solvation = -21368.784986 eV Core-core repulsion = 18249.831238 eV Total energy + Delta-G solvation = -3118.953748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16370 -37.93306 -36.61466 -34.53076 -33.13371 -31.42611 -30.58084 -28.01041 -26.80828 -25.40339 -22.75113 -22.54656 -21.62239 -20.03425 -19.71996 -18.75512 -17.23332 -15.98145 -15.78588 -15.33132 -15.06914 -14.58672 -14.42964 -14.00329 -13.54824 -13.18071 -12.91533 -12.65075 -12.47445 -12.37671 -11.98830 -11.52910 -11.38716 -11.02721 -10.95002 -10.86588 -10.74769 -10.70214 -10.55920 -10.42927 -10.39554 -10.20812 -9.96170 -9.80932 -9.67683 -8.79549 -8.60141 -8.01679 -7.03785 -6.03662 -3.81825 3.33884 3.41063 3.44606 3.67439 3.91504 4.38140 4.68257 4.97559 5.15279 5.22585 5.26631 5.30691 5.33035 5.41660 5.45631 5.55782 5.60321 5.74140 5.81423 5.97022 5.98485 6.02426 6.05477 6.13647 6.16779 6.20645 6.25703 6.30141 6.38336 6.47367 6.50765 6.60637 6.68630 6.88067 7.02476 7.27312 7.56276 7.70241 8.36397 9.14732 9.24191 9.73374 10.37153 11.03589 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.006901 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.388812 B = 4056.158241 C = 5228.065226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.042 3.958 5 H 0.120 0.880 6 C -0.167 4.167 7 C -0.170 4.170 8 H 0.112 0.888 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.442 5.442 12 C -0.338 4.338 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.834 5.834 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.129 3.871 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 4.280 5.753 10.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.280 6.280 4 C -0.016 4.016 5 H 0.137 0.863 6 C -0.205 4.205 7 C -0.192 4.192 8 H 0.130 0.870 9 C 0.296 3.704 10 O -0.421 6.421 11 N -0.163 5.163 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.137 4.137 15 N -0.468 5.468 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.024 3.976 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.009 3.740 5.558 9.696 hybrid contribution 0.802 -0.427 -0.392 0.989 sum -6.207 3.314 5.167 8.730 Atomic orbital electron populations 1.21740 0.94033 1.01992 1.02915 1.22482 0.95030 0.83963 1.00382 1.87752 1.19656 1.26414 1.94209 1.22612 0.80746 0.94998 1.03242 0.86283 1.23362 1.02233 1.02190 0.92676 1.22810 0.99633 1.01652 0.95131 0.87023 1.18968 0.84985 0.85691 0.80757 1.90497 1.64888 1.24985 1.61682 1.43232 1.20573 1.05509 1.46997 1.18784 0.90374 1.12991 1.24295 0.90514 1.25207 0.97241 0.97654 0.93643 1.69873 1.30004 1.16168 1.30722 0.86415 0.84311 0.77978 0.78166 1.20129 1.21364 1.20400 1.21751 0.94419 0.85862 0.95563 1.22675 1.00682 0.94116 0.98975 1.22447 0.97305 0.97185 0.99096 1.22256 0.98325 0.97623 0.97260 1.22423 1.01064 0.96193 0.97073 0.91867 0.91261 0.92091 0.92985 0.93425 0.88108 0.88432 0.92712 0.91272 0.89207 0.93070 0.92553 0.92411 0.92972 0.91610 0.92949 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.82 6.53 37.16 0.24 1.06 16 3 O -0.36 -6.32 10.60 -35.23 -0.37 -6.69 16 4 C 0.04 0.80 5.96 -26.70 -0.16 0.64 16 5 H 0.12 2.39 7.45 -51.93 -0.39 2.00 16 6 C -0.17 -2.88 10.19 -26.70 -0.27 -3.15 16 7 C -0.17 -3.52 4.91 -91.77 -0.45 -3.97 16 8 H 0.11 2.21 6.73 -51.93 -0.35 1.87 16 9 C 0.51 13.03 6.75 -10.98 -0.07 12.95 16 10 O -0.54 -15.95 14.12 5.54 0.08 -15.87 16 11 N -0.44 -10.95 2.45 -106.54 -0.26 -11.21 16 12 C -0.34 -9.09 7.51 -14.93 -0.11 -9.20 16 13 H 0.08 2.01 6.90 -52.49 -0.36 1.64 16 14 C 0.07 2.03 4.40 -17.47 -0.08 1.95 16 15 N -0.83 -24.70 11.83 55.50 0.66 -24.04 16 16 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.13 2.59 3.17 -66.82 -0.21 2.38 16 21 C -0.13 -2.43 6.43 -25.03 -0.16 -2.59 16 22 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 23 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 24 C -0.13 -2.27 6.20 -25.62 -0.16 -2.43 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.07 1.30 5.56 -51.93 -0.29 1.01 16 34 H 0.09 2.06 7.23 -51.93 -0.38 1.68 16 35 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.48 6.64 -51.93 -0.34 1.13 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -31.83 330.62 -8.08 -39.91 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.74 Total: 3.71 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.39 Total: -7.70 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.40 Total: -35.25 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.30 Total: -22.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.83 -8.08 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331447478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.976 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds