Wall clock time and date at job start Mon Mar 30 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46939 * 2 1 4 4 C 1.42905 * 114.00364 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.55791 * 4.31225 * 4 3 2 6 6 C 1.53067 * 117.49806 * 218.60226 * 4 3 2 7 7 C 1.52994 * 117.50089 * 149.99404 * 4 3 2 8 8 H 1.09001 * 117.49681 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.50164 * 214.97965 * 7 4 3 10 10 O 1.21298 * 119.99987 * 0.09827 * 9 7 4 11 11 N 1.34779 * 120.00170 * 180.08681 * 9 7 4 12 12 C 1.37103 * 119.99794 * 180.02562 * 11 9 7 13 13 H 1.08001 * 119.99584 * 225.49716 * 12 11 9 14 14 C 1.38950 * 119.99961 * 45.50519 * 12 11 9 15 15 N 1.31417 * 119.99909 * 17.79579 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 198.07754 * 14 12 11 17 17 H 1.48491 * 109.47250 * 59.99728 * 16 14 12 18 18 H 1.48497 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46768 * 299.99576 * 16 14 12 20 20 C 1.46500 * 119.99817 * 0.02562 * 11 9 7 21 21 C 1.54266 * 110.02954 * 242.60555 * 20 11 9 22 22 C 1.54960 * 104.16044 * 217.13722 * 21 20 11 23 23 C 1.54894 * 102.77603 * 37.88998 * 22 21 20 24 24 C 1.53868 * 110.03003 * 125.39104 * 20 11 9 25 25 H 1.09001 * 109.47107 * 60.00203 * 1 2 3 26 26 H 1.09002 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47591 * 299.99870 * 1 2 3 28 28 H 1.08997 * 109.47444 * 239.99604 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99797 * 2 1 3 30 30 H 1.09001 * 117.51147 * 145.03365 * 6 4 3 31 31 H 1.09002 * 117.51480 * 359.97438 * 6 4 3 32 32 H 0.97000 * 120.00102 * 184.85466 * 15 14 12 33 33 H 1.08995 * 110.01612 * 4.00052 * 20 11 9 34 34 H 1.08998 * 110.48783 * 335.78436 * 21 20 11 35 35 H 1.09008 * 110.48268 * 98.42741 * 21 20 11 36 36 H 1.09003 * 110.71948 * 279.57829 * 22 21 20 37 37 H 1.08999 * 110.92102 * 156.30080 * 22 21 20 38 38 H 1.09000 * 110.48492 * 203.40634 * 23 22 21 39 39 H 1.08996 * 110.59773 * 80.81890 * 23 22 21 40 40 H 1.09005 * 110.03181 * 238.56182 * 24 20 11 41 41 H 1.09000 * 110.03992 * 359.94665 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9772 0.5199 -0.0730 6 6 4.0511 2.5740 0.8478 7 6 4.0425 2.6875 -0.6780 8 1 3.3583 3.4085 -1.1253 9 6 5.3542 2.5038 -1.3968 10 8 5.8838 1.4129 -1.4232 11 7 5.9388 3.5517 -2.0106 12 6 7.1320 3.3844 -2.6649 13 1 7.9295 4.0991 -2.5248 14 6 7.3150 2.2955 -3.5085 15 7 6.2745 1.6300 -3.9574 16 14 9.0403 1.7729 -3.9980 17 1 9.8140 1.4182 -2.7813 18 1 8.9638 0.5941 -4.8978 19 1 9.7144 2.8916 -4.7048 20 6 5.2994 4.8694 -1.9784 21 6 4.9369 5.3158 -3.4099 22 6 5.2059 6.8419 -3.4107 23 6 6.4807 6.9654 -2.5396 24 6 6.2802 5.9178 -1.4250 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.0055 2.3664 1.3316 31 1 3.3726 3.2206 1.4042 32 1 6.4037 0.8285 -4.4884 33 1 4.4026 4.8339 -1.3600 34 1 5.5750 4.8158 -4.1386 35 1 3.8864 5.1126 -3.6183 36 1 4.3740 7.3803 -2.9565 37 1 5.3923 7.2037 -4.4218 38 1 6.5562 7.9659 -2.1136 39 1 7.3697 6.7333 -3.1259 40 1 5.8590 6.3919 -0.5385 41 1 7.2317 5.4462 -1.1794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331447478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:12 Heat of formation + Delta-G solvation = -71.084025 kcal Electronic energy + Delta-G solvation = -21369.617352 eV Core-core repulsion = 18249.831238 eV Total energy + Delta-G solvation = -3119.786114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89044 -39.37640 -38.22915 -36.06253 -35.03261 -33.39124 -31.68161 -29.43774 -28.44678 -27.28590 -24.37348 -23.79056 -23.06181 -21.38657 -21.33262 -20.59668 -18.81345 -17.79013 -17.40420 -16.72349 -16.49769 -16.43529 -15.82952 -15.65386 -15.22665 -15.00093 -14.44397 -14.09745 -13.69553 -13.61052 -13.36031 -13.13594 -12.99922 -12.80426 -12.73607 -12.50238 -12.25593 -12.15341 -12.08245 -11.87327 -11.80619 -11.76913 -11.41776 -11.33733 -11.25638 -10.70414 -10.18575 -9.98365 -9.05236 -8.15364 -5.95603 1.36473 1.43815 1.47934 2.08605 2.35949 2.44359 3.01954 3.19525 3.33054 3.82485 3.89142 3.91353 4.06685 4.09146 4.17413 4.21161 4.37518 4.41631 4.45900 4.52182 4.64187 4.71762 4.78733 4.84334 4.87606 4.93060 4.96370 5.01658 5.07057 5.14463 5.20615 5.25675 5.31058 5.44923 5.58032 5.60529 5.68634 6.21612 6.27110 7.09028 7.24673 7.74049 8.38988 8.91231 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.006901 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.388812 B = 4056.158241 C = 5228.065226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.043 3.957 5 H 0.099 0.901 6 C -0.131 4.131 7 C -0.189 4.189 8 H 0.121 0.879 9 C 0.494 3.506 10 O -0.594 6.594 11 N -0.453 5.453 12 C -0.340 4.340 13 H 0.079 0.921 14 C 0.021 3.979 15 N -0.873 5.873 16 Si 0.960 3.040 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.257 1.257 20 C 0.120 3.880 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.255 0.745 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 6.370 7.176 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 O -0.287 6.287 4 C -0.016 4.016 5 H 0.117 0.883 6 C -0.169 4.169 7 C -0.211 4.211 8 H 0.139 0.861 9 C 0.283 3.717 10 O -0.477 6.477 11 N -0.173 5.173 12 C -0.467 4.467 13 H 0.097 0.903 14 C -0.185 4.185 15 N -0.508 5.508 16 Si 0.786 3.214 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.182 1.182 20 C 0.016 3.984 21 C -0.165 4.165 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.163 4.163 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.033 5.887 6.977 12.160 hybrid contribution 1.069 -1.070 -0.790 1.706 sum -6.964 4.817 6.188 10.488 Atomic orbital electron populations 1.21747 0.91437 1.03745 1.03050 1.22782 0.97100 0.82528 1.00510 1.87738 1.18302 1.28463 1.94215 1.22452 0.81661 0.94034 1.03442 0.88303 1.23431 1.02475 1.00754 0.90195 1.22623 0.97546 1.03635 0.97281 0.86135 1.19777 0.86370 0.85046 0.80484 1.90448 1.66743 1.26905 1.63631 1.43499 1.20322 1.07256 1.46222 1.19025 0.91611 1.12685 1.23402 0.90304 1.26007 1.00408 0.98030 0.94036 1.69998 1.31847 1.16597 1.32407 0.85527 0.80349 0.78000 0.77547 1.20731 1.21684 1.18168 1.22073 0.95595 0.84170 0.96574 1.22597 0.99694 0.97010 0.97207 1.22412 0.98192 0.93994 1.00139 1.22248 0.97658 0.98717 0.96419 1.22387 0.99132 0.95877 0.98892 0.92489 0.88736 0.91136 0.94367 0.91907 0.88152 0.84926 0.93578 0.89587 0.93711 0.92925 0.89601 0.91386 0.89474 0.93321 0.89875 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.05 1.28 6.53 71.98 0.47 1.75 16 3 O -0.37 -12.46 10.60 -148.98 -1.58 -14.04 16 4 C 0.04 1.61 5.96 30.61 0.18 1.80 16 5 H 0.10 4.11 7.45 -2.38 -0.02 4.09 16 6 C -0.13 -4.26 10.19 30.62 0.31 -3.95 16 7 C -0.19 -7.77 4.91 -11.54 -0.06 -7.83 16 8 H 0.12 4.67 6.73 -2.39 -0.02 4.65 16 9 C 0.49 25.99 6.75 87.66 0.59 26.58 16 10 O -0.59 -36.58 14.12 -3.08 -0.04 -36.62 16 11 N -0.45 -22.91 2.45 -609.38 -1.49 -24.40 16 12 C -0.34 -18.81 7.51 84.04 0.63 -18.18 16 13 H 0.08 4.22 6.90 -2.91 -0.02 4.20 16 14 C 0.02 1.19 4.40 84.93 0.37 1.57 16 15 N -0.87 -54.13 11.83 21.66 0.26 -53.87 16 16 Si 0.96 46.43 29.59 68.60 2.03 48.46 16 17 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 18 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 C 0.12 4.71 3.17 45.71 0.14 4.86 16 21 C -0.13 -4.84 6.43 31.69 0.20 -4.63 16 22 C -0.11 -3.09 6.91 31.91 0.22 -2.86 16 23 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 24 C -0.12 -4.13 6.20 31.32 0.19 -3.93 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.09 3.07 5.56 -2.39 -0.01 3.05 16 34 H 0.04 2.11 7.23 -2.39 -0.02 2.09 16 35 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.05 1.91 6.64 -2.39 -0.02 1.90 16 Total: -1.00 -72.78 330.62 4.39 -68.39 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 1.00 Total: 22.05 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.22 Total: -9.97 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.24 Total: -78.27 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.62 Total: -50.66 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.78 4.39 -68.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331447478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.692 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds