Wall clock time and date at job start Mon Mar 30 2020 00:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.51184 * 2 1 4 4 C 1.52876 * 109.58463 * 239.98181 * 2 1 3 5 5 N 1.47153 * 108.61071 * 187.92552 * 4 2 1 6 6 C 1.34773 * 120.98246 * 230.50210 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.44019 * 6 5 4 8 8 C 1.50706 * 120.00081 * 359.71295 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.50696 * 109.46969 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00408 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99883 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99926 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47025 * 59.99930 * 14 12 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47148 * 300.00133 * 14 12 10 18 18 C 1.47152 * 118.03531 * 50.22234 * 5 4 2 19 19 C 1.53298 * 108.38669 * 309.71848 * 18 5 4 20 20 H 1.09005 * 109.51375 * 292.32952 * 19 18 5 21 21 C 1.52993 * 109.51191 * 172.22796 * 19 18 5 22 22 C 1.53001 * 117.49946 * 248.74537 * 21 19 18 23 23 C 1.53002 * 117.49697 * 180.08844 * 21 19 18 24 24 O 1.42962 * 109.51279 * 120.09592 * 2 1 3 25 25 H 1.09002 * 109.46786 * 299.90283 * 1 2 3 26 26 H 1.08997 * 109.46689 * 59.90229 * 1 2 3 27 27 H 1.08997 * 109.46919 * 179.90114 * 1 2 3 28 28 H 1.08997 * 109.61956 * 68.10388 * 4 2 1 29 29 H 1.09006 * 109.52204 * 307.68222 * 4 2 1 30 30 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 31 31 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 32 32 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 33 33 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 34 34 H 0.96999 * 119.99905 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.68223 * 69.44706 * 18 5 4 36 36 H 1.09009 * 109.68174 * 189.95944 * 18 5 4 37 37 H 1.09001 * 115.55141 * 34.41832 * 21 19 18 38 38 H 1.09001 * 117.49605 * 0.02562 * 22 21 19 39 39 H 1.09001 * 117.50187 * 145.02166 * 22 21 19 40 40 H 1.09001 * 117.49971 * 214.97380 * 23 21 19 41 41 H 1.08996 * 117.50022 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3194 -0.5044 -2.1373 7 8 5.5198 -0.6317 -2.0203 8 6 3.7430 0.0759 -3.4031 9 6 4.8781 0.4181 -4.3702 10 6 4.3017 0.9978 -5.6362 11 1 3.2327 1.1113 -5.7404 12 6 5.1390 1.3835 -6.6615 13 7 6.4406 1.2449 -6.5349 14 14 4.4245 2.1027 -8.2305 15 1 3.6617 3.3352 -7.9074 16 1 5.5262 2.4348 -9.1693 17 1 3.5177 1.1105 -8.8617 18 6 4.0407 -1.4458 0.1121 19 6 3.4313 -0.6848 1.2952 20 1 3.8037 0.3396 1.2999 21 6 3.8213 -1.3764 2.6030 22 6 2.7119 -2.0778 3.3894 23 6 3.3047 -0.7648 3.9068 24 8 2.0075 -0.6757 1.1658 25 1 -0.3633 0.5123 0.8909 26 1 -0.3632 0.5153 -0.8891 27 1 -0.3633 -1.0276 -0.0018 28 1 1.8044 -0.1324 -2.1334 29 1 1.5728 -1.7016 -1.3198 30 1 3.0778 -0.6526 -3.8666 31 1 3.1827 0.9802 -3.1659 32 1 5.5433 1.1466 -3.9066 33 1 5.4384 -0.4863 -4.6074 34 1 7.0297 1.5158 -7.2563 35 1 3.7757 -2.5009 0.1786 36 1 5.1253 -1.3382 0.1252 37 1 4.8125 -1.8297 2.6177 38 1 1.7044 -2.0469 2.9747 39 1 2.9734 -2.9923 3.9217 40 1 3.9558 -0.8161 4.7795 41 1 2.6866 0.1299 3.8329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331515113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:30 Heat of formation + Delta-G solvation = -65.402817 kcal Electronic energy + Delta-G solvation = -20769.333004 eV Core-core repulsion = 17649.793246 eV Total energy + Delta-G solvation = -3119.539759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35782 -38.52551 -36.87527 -34.47519 -33.56684 -32.70496 -31.05603 -29.09221 -26.40561 -25.89798 -23.80892 -22.57321 -21.74327 -21.12539 -20.42527 -18.62323 -17.14169 -16.71237 -16.13208 -15.90152 -15.59742 -15.37420 -14.93796 -14.56443 -14.36358 -13.61205 -13.49833 -13.15096 -12.59969 -12.50901 -12.25093 -12.14127 -12.00709 -11.71527 -11.61286 -11.33961 -11.11878 -10.92545 -10.89163 -10.62518 -10.50476 -10.38019 -9.98209 -9.94225 -9.64014 -9.21193 -9.02542 -8.38687 -8.31153 -5.97097 -4.01846 3.09739 3.16625 3.33503 3.36120 3.38388 3.40012 3.68925 4.40731 4.45898 4.63808 4.72951 4.80615 4.90056 4.92544 5.01942 5.19635 5.26427 5.29896 5.35103 5.37708 5.50798 5.53170 5.58552 5.69000 5.74223 5.84504 5.87019 5.95488 5.99747 6.10585 6.15431 6.17773 6.59975 6.85721 7.06174 7.67010 7.72398 7.83959 8.05459 8.36392 8.67857 9.06130 9.61660 11.13842 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.003890 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.270807 B = 7195.583642 C = 7816.011994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.081 3.919 5 N -0.629 5.629 6 C 0.514 3.486 7 O -0.531 6.531 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.087 3.913 19 C 0.111 3.889 20 H 0.065 0.935 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.173 4.173 24 O -0.374 6.374 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -4.642 18.536 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.043 4.043 5 N -0.366 5.366 6 C 0.305 3.695 7 O -0.406 6.406 8 C -0.168 4.168 9 C 0.000 4.000 10 C -0.567 4.567 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.036 4.036 19 C 0.052 3.948 20 H 0.083 0.917 21 C -0.172 4.172 22 C -0.200 4.200 23 C -0.210 4.210 24 O -0.293 6.293 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.082 -4.765 18.596 22.165 hybrid contribution -0.175 0.482 -1.067 1.184 sum -11.256 -4.282 17.529 21.268 Atomic orbital electron populations 1.21721 0.92205 1.03146 1.02866 1.22405 0.95393 0.95566 0.85126 0.91906 1.22344 0.80752 1.01755 0.99451 1.48371 1.06643 1.64982 1.16589 1.21637 0.86670 0.76399 0.84842 1.90660 1.15162 1.53999 1.80796 1.21891 1.02465 1.00113 0.92298 1.18905 0.91722 0.97638 0.91749 1.21168 0.93024 1.42078 1.00398 0.92658 1.25025 0.94816 0.95869 0.98632 1.69984 1.02443 1.47393 1.32970 0.86645 0.78583 0.79554 0.83105 1.20240 1.21269 1.20226 1.22125 1.00806 0.97390 0.83308 1.21833 0.81380 0.98574 0.92983 0.91678 1.22228 0.99431 1.04904 0.90655 1.22860 0.99017 0.95564 1.02528 1.22933 1.03821 0.97825 0.96463 1.87888 1.20631 1.77520 1.43285 0.91623 0.90541 0.91600 0.88162 0.90889 0.90199 0.90296 0.95842 0.95801 0.92863 0.91179 0.88286 0.86432 0.87624 0.89177 0.88905 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.79 16 2 C 0.07 0.79 3.39 -26.79 -0.09 0.70 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.08 0.97 5.81 -3.75 -0.02 0.95 16 5 N -0.63 -9.78 3.03 -172.52 -0.52 -10.30 16 6 C 0.51 10.29 7.71 -10.98 -0.08 10.20 16 7 O -0.53 -12.79 15.45 5.56 0.09 -12.70 16 8 C -0.13 -2.63 4.02 -27.88 -0.11 -2.74 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 11 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.47 13.29 55.43 0.74 -26.74 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.09 1.20 5.91 -3.53 -0.02 1.18 16 19 C 0.11 1.31 3.14 -26.58 -0.08 1.22 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.15 -1.51 5.71 -90.62 -0.52 -2.03 16 22 C -0.16 -1.46 9.88 -26.69 -0.26 -1.73 16 23 C -0.17 -1.52 10.20 -26.69 -0.27 -1.80 16 24 O -0.37 -4.33 8.39 -35.23 -0.30 -4.63 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 1.16 6.05 -51.93 -0.31 0.84 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 31 H 0.08 1.47 7.63 -51.93 -0.40 1.08 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.50 7.08 -51.92 -0.37 1.14 16 37 H 0.12 1.06 8.12 -51.93 -0.42 0.64 16 38 H 0.11 1.04 7.06 -51.93 -0.37 0.68 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -33.45 332.79 -8.54 -41.98 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.89 Total: -1.59 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.64 Total: -7.64 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.21 Total: -37.04 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.21 Total: -17.33 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -8.54 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331515113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.419 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds