Wall clock time and date at job start Mon Mar 30 2020 00:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.51184 * 2 1 4 4 C 1.52876 * 109.58463 * 239.98181 * 2 1 3 5 5 N 1.47153 * 108.61071 * 187.92552 * 4 2 1 6 6 C 1.34773 * 120.98246 * 230.50210 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.44019 * 6 5 4 8 8 C 1.50706 * 120.00081 * 359.71295 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.50696 * 109.46969 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00408 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99883 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99926 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47025 * 59.99930 * 14 12 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47148 * 300.00133 * 14 12 10 18 18 C 1.47152 * 118.03531 * 50.22234 * 5 4 2 19 19 C 1.53298 * 108.38669 * 309.71848 * 18 5 4 20 20 H 1.09005 * 109.51375 * 292.32952 * 19 18 5 21 21 C 1.52993 * 109.51191 * 172.22796 * 19 18 5 22 22 C 1.53001 * 117.49946 * 248.74537 * 21 19 18 23 23 C 1.53002 * 117.49697 * 180.08844 * 21 19 18 24 24 O 1.42962 * 109.51279 * 120.09592 * 2 1 3 25 25 H 1.09002 * 109.46786 * 299.90283 * 1 2 3 26 26 H 1.08997 * 109.46689 * 59.90229 * 1 2 3 27 27 H 1.08997 * 109.46919 * 179.90114 * 1 2 3 28 28 H 1.08997 * 109.61956 * 68.10388 * 4 2 1 29 29 H 1.09006 * 109.52204 * 307.68222 * 4 2 1 30 30 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 31 31 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 32 32 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 33 33 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 34 34 H 0.96999 * 119.99905 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.68223 * 69.44706 * 18 5 4 36 36 H 1.09009 * 109.68174 * 189.95944 * 18 5 4 37 37 H 1.09001 * 115.55141 * 34.41832 * 21 19 18 38 38 H 1.09001 * 117.49605 * 0.02562 * 22 21 19 39 39 H 1.09001 * 117.50187 * 145.02166 * 22 21 19 40 40 H 1.09001 * 117.49971 * 214.97380 * 23 21 19 41 41 H 1.08996 * 117.50022 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3194 -0.5044 -2.1373 7 8 5.5198 -0.6317 -2.0203 8 6 3.7430 0.0759 -3.4031 9 6 4.8781 0.4181 -4.3702 10 6 4.3017 0.9978 -5.6362 11 1 3.2327 1.1113 -5.7404 12 6 5.1390 1.3835 -6.6615 13 7 6.4406 1.2449 -6.5349 14 14 4.4245 2.1027 -8.2305 15 1 3.6617 3.3352 -7.9074 16 1 5.5262 2.4348 -9.1693 17 1 3.5177 1.1105 -8.8617 18 6 4.0407 -1.4458 0.1121 19 6 3.4313 -0.6848 1.2952 20 1 3.8037 0.3396 1.2999 21 6 3.8213 -1.3764 2.6030 22 6 2.7119 -2.0778 3.3894 23 6 3.3047 -0.7648 3.9068 24 8 2.0075 -0.6757 1.1658 25 1 -0.3633 0.5123 0.8909 26 1 -0.3632 0.5153 -0.8891 27 1 -0.3633 -1.0276 -0.0018 28 1 1.8044 -0.1324 -2.1334 29 1 1.5728 -1.7016 -1.3198 30 1 3.0778 -0.6526 -3.8666 31 1 3.1827 0.9802 -3.1659 32 1 5.5433 1.1466 -3.9066 33 1 5.4384 -0.4863 -4.6074 34 1 7.0297 1.5158 -7.2563 35 1 3.7757 -2.5009 0.1786 36 1 5.1253 -1.3382 0.1252 37 1 4.8125 -1.8297 2.6177 38 1 1.7044 -2.0469 2.9747 39 1 2.9734 -2.9923 3.9217 40 1 3.9558 -0.8161 4.7795 41 1 2.6866 0.1299 3.8329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331515113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:30 Heat of formation + Delta-G solvation = -86.375147 kcal Electronic energy + Delta-G solvation = -20770.242433 eV Core-core repulsion = 17649.793246 eV Total energy + Delta-G solvation = -3120.449187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55135 -39.84339 -37.72425 -35.75555 -35.62812 -33.71147 -32.92217 -30.24151 -27.82180 -27.32253 -25.18181 -23.28196 -23.20175 -22.37074 -21.31905 -20.06128 -18.89110 -17.78748 -17.69124 -16.96445 -16.91497 -16.53172 -16.43211 -16.17378 -15.34495 -15.03533 -14.88468 -14.22033 -13.96410 -13.92170 -13.67515 -13.26295 -13.07467 -12.99592 -12.78615 -12.54253 -12.49750 -12.30373 -12.17800 -11.96123 -11.81298 -11.60335 -11.34272 -11.33497 -11.25932 -10.88101 -10.69437 -10.56838 -9.59879 -8.18608 -6.33222 1.42165 1.46873 1.54560 1.57376 1.84065 2.42653 2.50991 2.92170 3.14360 3.50464 3.67771 3.80715 3.84592 3.99943 4.05032 4.13858 4.22796 4.32702 4.36832 4.40809 4.47574 4.49620 4.59473 4.69244 4.81793 4.85218 4.94168 5.00912 5.03297 5.05358 5.25782 5.33616 5.38469 5.39152 5.48773 5.58751 5.82701 6.14711 6.15249 6.26032 6.84469 7.14083 7.37208 8.94014 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.003890 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.270807 B = 7195.583642 C = 7816.011994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.072 3.928 3 H 0.056 0.944 4 C 0.073 3.927 5 N -0.620 5.620 6 C 0.511 3.489 7 O -0.586 6.586 8 C -0.115 4.115 9 C 0.043 3.957 10 C -0.544 4.544 11 H 0.078 0.922 12 C -0.007 4.007 13 N -0.938 5.938 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.085 3.915 19 C 0.119 3.881 20 H 0.052 0.948 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.167 4.167 24 O -0.373 6.373 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.104 0.896 32 H -0.019 1.019 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 -4.591 18.906 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.049 4.049 5 N -0.354 5.354 6 C 0.302 3.698 7 O -0.466 6.466 8 C -0.154 4.154 9 C 0.006 3.994 10 C -0.582 4.582 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.578 5.578 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.038 4.038 19 C 0.060 3.940 20 H 0.069 0.931 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.204 4.204 24 O -0.292 6.292 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.315 -4.724 19.009 24.260 hybrid contribution 0.795 0.435 -1.109 1.432 sum -13.520 -4.289 17.900 22.838 Atomic orbital electron populations 1.21718 0.89678 1.03903 1.03936 1.22539 0.97216 0.94808 0.84068 0.92603 1.22699 0.78177 1.03262 1.00773 1.48336 1.07998 1.63139 1.15897 1.21488 0.86210 0.76427 0.85650 1.90640 1.17461 1.56599 1.81893 1.21649 1.00305 1.02001 0.91463 1.18687 0.92935 0.94527 0.93282 1.21667 0.94193 1.41635 1.00682 0.90401 1.26159 0.95050 0.96209 1.03027 1.70174 1.04408 1.48810 1.34412 0.85353 0.77812 0.79253 0.77708 1.18571 1.21426 1.18592 1.22261 0.99894 0.98363 0.83255 1.21699 0.81508 0.97681 0.93064 0.93055 1.22232 1.00209 1.05980 0.90158 1.22894 0.98121 0.96281 1.01923 1.22994 1.03603 0.97615 0.96141 1.87913 1.20119 1.77535 1.43671 0.91104 0.88962 0.90979 0.87207 0.89080 0.87746 0.87761 1.00041 1.00034 0.92836 0.89899 0.90333 0.85834 0.88341 0.87650 0.87351 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.57 71.98 0.69 -1.05 16 2 C 0.07 1.38 3.39 30.55 0.10 1.48 16 3 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 4 C 0.07 1.59 5.81 86.21 0.50 2.09 16 5 N -0.62 -18.94 3.03 -818.13 -2.48 -21.42 16 6 C 0.51 20.92 7.71 87.66 0.68 21.60 16 7 O -0.59 -29.89 15.45 -3.04 -0.05 -29.93 16 8 C -0.11 -4.70 4.02 29.85 0.12 -4.58 16 9 C 0.04 2.44 4.26 29.85 0.13 2.57 16 10 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 11 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 12 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 13 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 14 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 C 0.08 2.34 5.91 86.36 0.51 2.85 16 19 C 0.12 2.73 3.14 30.69 0.10 2.83 16 20 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 21 C -0.17 -3.09 5.71 -10.79 -0.06 -3.15 16 22 C -0.16 -2.46 9.88 30.62 0.30 -2.16 16 23 C -0.17 -2.62 10.20 30.62 0.31 -2.31 16 24 O -0.37 -7.97 8.39 -148.98 -1.25 -9.21 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 2.20 6.05 -2.39 -0.01 2.18 16 29 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.10 3.76 8.04 -2.39 -0.02 3.74 16 31 H 0.10 3.73 7.63 -2.39 -0.02 3.71 16 32 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 33 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.50 7.08 -2.38 -0.02 2.49 16 37 H 0.12 2.12 8.12 -2.39 -0.02 2.10 16 38 H 0.10 1.73 7.06 -2.39 -0.02 1.71 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.78 332.79 3.60 -72.18 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.99 Total: 12.31 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.07 Total: -10.50 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.19 Total: -80.96 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -1.30 Total: -39.15 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -75.78 3.60 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331515113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.194 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds