Wall clock time and date at job start Mon Mar 30 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.05197 * 2 1 4 4 C 1.54266 * 110.03079 * 121.41334 * 2 1 3 5 5 C 1.54894 * 104.31305 * 95.60642 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 C 1.53869 * 110.02962 * 238.57962 * 2 1 3 8 8 H 1.08999 * 110.04012 * 0.02562 * 7 2 1 9 9 C 1.53009 * 110.02997 * 121.38372 * 7 2 1 10 10 C 1.50704 * 109.47028 * 184.99401 * 9 7 2 11 11 O 1.21276 * 119.99879 * 0.02562 * 10 9 7 12 12 N 1.34770 * 119.99724 * 179.97438 * 10 9 7 13 13 C 1.47063 * 136.06107 * 359.64183 * 12 10 9 14 14 C 1.53237 * 88.08559 * 207.19807 * 13 12 10 15 15 O 1.42896 * 114.02088 * 87.71404 * 14 13 12 16 16 C 1.50709 * 114.50532 * 220.45681 * 14 13 12 17 17 H 1.07992 * 120.00009 * 93.84305 * 16 14 13 18 18 C 1.37871 * 119.99546 * 273.84313 * 16 14 13 19 19 N 1.31514 * 120.00634 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99670 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47113 * 60.00226 * 20 18 16 22 22 H 1.48501 * 109.47104 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47351 * 299.99934 * 20 18 16 24 24 C 1.47068 * 136.05729 * 179.97438 * 12 10 9 25 25 H 1.08999 * 109.47517 * 300.04128 * 1 2 3 26 26 H 1.08997 * 109.47176 * 60.04047 * 1 2 3 27 27 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09002 * 110.48629 * 214.35395 * 4 2 1 29 29 H 1.08998 * 110.48744 * 336.86299 * 4 2 1 30 30 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 31 31 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 32 32 H 1.09005 * 110.46917 * 203.39204 * 6 5 4 33 33 H 1.09006 * 110.46947 * 80.77225 * 6 5 4 34 34 H 1.08993 * 109.47258 * 304.99884 * 9 7 2 35 35 H 1.08995 * 109.47197 * 64.99935 * 9 7 2 36 36 H 1.09004 * 113.46728 * 321.93196 * 13 12 10 37 37 H 1.09001 * 113.47361 * 92.36921 * 13 12 10 38 38 H 0.96697 * 113.99880 * 86.38738 * 15 14 13 39 39 H 0.96998 * 120.00327 * 179.97438 * 19 18 16 40 40 H 1.08998 * 113.47147 * 267.63649 * 24 12 10 41 41 H 1.09008 * 113.46565 * 38.07564 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3273 -2.1915 0.7226 6 6 2.8874 -1.9407 -0.7034 7 6 2.0570 -0.7536 -1.2336 8 1 1.2229 -1.1190 -1.8326 9 6 2.9399 0.1706 -2.0748 10 6 3.3488 -0.5394 -3.3396 11 8 2.9709 -1.6728 -3.5480 12 7 4.1335 0.0855 -4.2396 13 6 4.7682 1.4072 -4.3542 14 6 4.7101 1.2461 -5.8769 15 8 3.4896 1.7018 -6.4639 16 6 5.9381 1.7304 -6.6041 17 1 6.7317 1.0384 -6.8440 18 6 6.0482 3.0570 -6.9631 19 7 5.0815 3.8997 -6.6714 20 14 7.5699 3.6573 -7.8650 21 1 7.7045 2.9255 -9.1502 22 1 7.4436 5.1121 -8.1352 23 1 8.7711 3.4115 -7.0273 24 6 4.7272 -0.2520 -5.5421 25 1 -0.3634 0.5145 0.8896 26 1 -0.3633 0.5132 -0.8903 27 1 -0.3634 -1.0277 0.0005 28 1 2.9811 -0.3000 1.5967 29 1 1.3070 -0.7674 2.0264 30 1 3.0658 -2.6936 1.3475 31 1 1.4020 -2.7658 0.6788 32 1 2.7401 -2.8198 -1.3309 33 1 3.9440 -1.6766 -0.6570 34 1 2.3835 1.0729 -2.3282 35 1 3.8295 0.4402 -1.5057 36 1 4.1465 2.2211 -3.9812 37 1 5.7837 1.4368 -3.9592 38 1 3.4824 2.6458 -6.6735 39 1 5.1592 4.8331 -6.9236 40 1 5.7315 -0.6686 -5.4665 41 1 4.0704 -0.8464 -6.1775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334462610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:06 Heat of formation + Delta-G solvation = -74.279357 kcal Electronic energy + Delta-G solvation = -20894.812570 eV Core-core repulsion = 17774.887896 eV Total energy + Delta-G solvation = -3119.924674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79189 -38.68745 -37.04876 -33.98431 -32.19660 -31.45971 -30.97636 -28.74503 -26.42591 -25.35412 -25.08486 -23.81393 -20.67773 -20.02639 -19.23473 -18.14406 -17.39181 -16.16746 -15.78217 -15.28975 -15.19683 -14.71728 -14.55330 -14.19519 -13.59451 -13.29305 -13.07359 -12.86556 -12.57599 -12.45693 -12.09509 -12.03016 -11.63699 -11.55875 -11.07177 -11.05456 -10.87765 -10.75522 -10.63635 -10.52506 -10.50183 -10.44974 -10.35932 -10.25859 -9.56534 -9.10616 -8.76817 -8.37912 -7.80747 -6.41006 -4.51557 3.15327 3.21299 3.23206 3.29104 3.62455 4.17344 4.59017 4.63639 4.74386 4.82343 5.15621 5.27900 5.35681 5.38525 5.45003 5.58737 5.60108 5.66363 5.71564 5.80399 5.88947 5.92731 5.97305 6.02638 6.09985 6.14128 6.20968 6.25462 6.35843 6.42691 6.44137 6.53605 6.63128 6.67878 6.71062 7.11581 7.62114 7.80518 8.51121 8.59065 8.84493 9.20003 9.48998 10.65607 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035671 B = 0.004014 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.755267 B = 6973.970516 C = 7141.190354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.112 4.112 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.126 4.126 10 C 0.534 3.466 11 O -0.563 6.563 12 N -0.637 5.637 13 C 0.073 3.927 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.106 3.894 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.274 0.726 40 H 0.083 0.917 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -3.700 12.436 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.164 4.164 6 C -0.149 4.149 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.166 4.166 10 C 0.324 3.676 11 O -0.443 6.443 12 N -0.371 5.371 13 C -0.051 4.051 14 C 0.197 3.803 15 O -0.385 6.385 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.017 4.017 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.230 -4.803 12.531 14.071 hybrid contribution 1.025 1.150 -0.452 1.605 sum -3.205 -3.653 12.079 13.020 Atomic orbital electron populations 1.21867 0.95068 1.01684 1.01403 1.21825 0.95710 0.99413 0.94483 0.91004 1.22420 1.00524 0.95798 0.96972 1.22575 1.00555 0.96498 0.96724 1.22431 0.98772 0.98616 0.95127 1.21598 0.97959 0.94546 0.94813 0.90157 1.21728 1.00995 0.99618 0.94268 1.20099 0.78162 0.85742 0.83592 1.90611 1.57003 1.18823 1.77910 1.49755 1.47571 1.18670 1.21064 1.24122 0.96084 0.82832 1.02029 1.19502 0.84666 0.88602 0.87509 1.86045 1.36604 1.33119 1.82743 1.21408 1.02992 0.94613 1.38234 0.91003 1.25073 0.97135 0.96311 0.94479 1.69253 1.32917 1.04965 1.46817 0.86366 0.82187 0.77649 0.80197 1.19817 1.20971 1.19868 1.23301 0.96813 0.99590 0.81968 0.92983 0.92610 0.92680 0.91847 0.91951 0.91996 0.91765 0.90895 0.92196 0.89385 0.89559 0.91840 0.90226 0.75017 0.91522 0.89888 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.83 37.16 0.33 -1.14 16 2 C -0.10 -1.08 3.16 -89.50 -0.28 -1.36 16 3 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 4 C -0.12 -1.20 6.36 -25.07 -0.16 -1.36 16 5 C -0.13 -1.36 6.94 -24.55 -0.17 -1.53 16 6 C -0.11 -1.52 5.44 -24.88 -0.14 -1.66 16 7 C -0.07 -0.98 2.20 -89.50 -0.20 -1.18 16 8 H 0.08 1.25 7.45 -51.93 -0.39 0.86 16 9 C -0.13 -1.97 4.66 -27.88 -0.13 -2.10 16 10 C 0.53 10.80 7.86 -10.99 -0.09 10.72 16 11 O -0.56 -12.75 15.60 5.56 0.09 -12.67 16 12 N -0.64 -13.60 3.69 -185.39 -0.68 -14.29 16 13 C 0.07 1.55 7.82 -8.66 -0.07 1.49 16 14 C 0.24 5.76 1.57 -91.38 -0.14 5.62 16 15 O -0.57 -14.87 13.53 -35.23 -0.48 -15.35 16 16 C -0.53 -13.35 8.70 -34.44 -0.30 -13.65 16 17 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 19 N -0.90 -22.62 11.01 55.43 0.61 -22.01 16 20 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C 0.11 2.35 8.04 -8.51 -0.07 2.28 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.12 7.66 -51.93 -0.40 0.72 16 33 H 0.06 0.83 7.76 -51.93 -0.40 0.43 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 38 H 0.39 10.28 6.32 45.56 0.29 10.56 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 41 H 0.06 1.48 8.14 -51.92 -0.42 1.06 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -27.46 329.98 -8.33 -35.80 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.31 Total: 11.50 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.51 Total: -2.19 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.30 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.39 Total: -28.01 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.46 -8.33 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334462610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.484 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds