Wall clock time and date at job start Mon Mar 30 2020 00:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.98409 * 2 1 4 4 O 1.43740 * 109.87863 * 121.08288 * 2 1 3 5 5 C 1.44377 * 106.97096 * 145.93866 * 4 2 1 6 6 C 1.55347 * 103.50517 * 319.90994 * 5 4 2 7 7 C 1.54103 * 109.87905 * 238.91971 * 2 1 3 8 8 H 1.08998 * 110.48931 * 119.87019 * 7 2 1 9 9 C 1.50703 * 110.48829 * 357.35428 * 7 2 1 10 10 O 1.21285 * 119.99383 * 272.69607 * 9 7 2 11 11 N 1.34767 * 120.00038 * 92.69160 * 9 7 2 12 12 C 1.46926 * 120.63535 * 359.72583 * 11 9 7 13 13 C 1.52761 * 109.00634 * 233.58341 * 12 11 9 14 14 C 1.53034 * 109.38380 * 305.58116 * 13 12 11 15 15 C 1.50696 * 109.46299 * 181.26214 * 14 13 12 16 16 H 1.07997 * 120.00241 * 239.93097 * 15 14 13 17 17 C 1.37883 * 119.99860 * 59.93342 * 15 14 13 18 18 N 1.31510 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47089 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46940 * 119.99997 * 19 17 15 22 22 H 1.48503 * 109.47075 * 239.99757 * 19 17 15 23 23 C 1.53040 * 109.54063 * 61.24186 * 14 13 12 24 24 C 1.46935 * 120.63062 * 179.97438 * 11 9 7 25 25 H 1.09006 * 109.46764 * 183.29694 * 1 2 3 26 26 H 1.08995 * 109.47319 * 303.30277 * 1 2 3 27 27 H 1.09001 * 109.46945 * 63.30435 * 1 2 3 28 28 H 1.09000 * 110.62207 * 78.44184 * 5 4 2 29 29 H 1.09008 * 110.61793 * 201.28205 * 5 4 2 30 30 H 1.08999 * 110.95485 * 278.91951 * 6 5 4 31 31 H 1.08993 * 111.00696 * 155.21075 * 6 5 4 32 32 H 1.09004 * 109.57899 * 353.41206 * 12 11 9 33 33 H 1.08991 * 109.59130 * 113.83502 * 12 11 9 34 34 H 1.09000 * 109.56277 * 185.54716 * 13 12 11 35 35 H 1.09000 * 109.36615 * 65.49633 * 13 12 11 36 36 H 1.09004 * 109.46324 * 301.22561 * 14 13 12 37 37 H 0.97004 * 119.99517 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.50480 * 178.68528 * 23 14 13 39 39 H 1.09004 * 109.52262 * 58.60094 * 23 14 13 40 40 H 1.08999 * 109.58720 * 246.15911 * 24 11 9 41 41 H 1.08995 * 109.58199 * 6.58657 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2380 -1.3640 0.7646 6 6 2.9189 -1.8933 -0.6606 7 6 2.0541 -0.7481 -1.2412 8 1 2.6620 -0.0858 -1.8574 9 6 0.9073 -1.3076 -2.0430 10 8 0.4595 -2.4031 -1.7778 11 7 0.3794 -0.5906 -3.0547 12 6 0.9071 0.7405 -3.3840 13 6 -0.2445 1.7442 -3.3923 14 6 -1.3414 1.2509 -4.3385 15 6 -2.4647 2.2549 -4.3718 16 1 -3.4598 1.9620 -4.0712 17 6 -2.2221 3.5474 -4.7861 18 7 -1.0105 3.9039 -5.1527 19 14 -3.6144 4.7921 -4.8266 20 1 -4.8705 4.1449 -4.3697 21 1 -3.2880 5.9293 -3.9291 22 1 -3.7917 5.2915 -6.2139 23 6 -1.8756 -0.0957 -3.8451 24 6 -0.7385 -1.1228 -3.8459 25 1 -0.3633 -1.0260 0.0591 26 1 -0.3634 0.5642 0.8589 27 1 -0.3633 0.4617 -0.9181 28 1 4.0686 -0.6588 0.7355 29 1 3.4600 -2.1890 1.4417 30 1 2.3521 -2.8232 -0.6133 31 1 3.8314 -2.0248 -1.2419 32 1 1.6430 1.0369 -2.6365 33 1 1.3734 0.7154 -4.3689 34 1 0.1192 2.7142 -3.7312 35 1 -0.6488 1.8387 -2.3845 36 1 -0.9302 1.1330 -5.3411 37 1 -0.8397 4.8133 -5.4438 38 1 -2.6729 -0.4353 -4.5063 39 1 -2.2649 0.0156 -2.8331 40 1 -0.4089 -1.3027 -4.8692 41 1 -1.0881 -2.0554 -3.4030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334921088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:29 Heat of formation + Delta-G solvation = -90.496854 kcal Electronic energy + Delta-G solvation = -21859.753531 eV Core-core repulsion = 18739.125613 eV Total energy + Delta-G solvation = -3120.627918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65548 -38.56966 -36.76005 -33.60948 -32.61399 -31.42272 -31.03018 -30.08788 -26.72503 -25.85014 -23.43528 -22.52809 -22.12121 -21.52963 -19.46038 -18.13194 -17.34132 -16.49135 -16.07723 -15.83783 -15.47090 -14.77156 -14.65693 -14.55123 -13.51727 -13.32109 -13.04852 -12.78262 -12.67623 -12.40092 -12.17592 -12.13627 -11.98167 -11.54300 -11.37157 -11.16749 -10.98888 -10.93236 -10.77387 -10.64297 -10.42278 -10.13767 -9.84379 -9.67139 -9.31954 -9.20997 -8.95551 -8.41946 -8.04547 -6.07753 -4.13632 2.87661 3.24586 3.33483 3.37244 3.38617 3.83385 4.37673 4.45010 4.65559 4.82886 4.99879 5.10719 5.20400 5.23128 5.43321 5.50643 5.55030 5.60724 5.70815 5.77629 5.89408 5.94534 6.03891 6.09154 6.10692 6.12388 6.24688 6.40742 6.41762 6.62256 6.84538 6.88269 6.99355 7.09465 7.21858 7.61855 7.86720 7.87216 7.98990 8.35561 8.51302 8.90161 9.51994 10.97862 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029929 B = 0.005222 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.324925 B = 5361.084436 C = 5698.352718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.077 0.923 4 O -0.371 6.371 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.147 4.147 8 H 0.104 0.896 9 C 0.528 3.472 10 O -0.554 6.554 11 N -0.599 5.599 12 C 0.100 3.900 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -6.764 6.580 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.036 3.964 3 H 0.095 0.905 4 O -0.291 6.291 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.169 4.169 8 H 0.122 0.878 9 C 0.316 3.684 10 O -0.433 6.433 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.162 4.162 24 C -0.011 4.011 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.546 -7.173 6.833 13.084 hybrid contribution -0.535 0.979 -0.390 1.181 sum 8.011 -6.195 6.443 12.003 Atomic orbital electron populations 1.22213 0.93079 1.03749 1.03575 1.22554 0.95882 0.94934 0.83000 0.90530 1.88897 1.39568 1.67712 1.32875 1.23581 0.87742 0.96291 0.95235 1.23206 0.99641 0.99237 0.95903 1.22860 0.96955 0.99138 0.97942 0.87806 1.19995 0.83723 0.84850 0.79847 1.90627 1.62865 1.21180 1.68662 1.48260 1.34241 1.18490 1.32127 1.22023 0.98119 0.82086 0.99969 1.21978 0.95082 0.99540 0.99729 1.18634 0.93788 0.90111 0.94460 1.21241 0.95066 0.94988 1.43626 0.92633 1.24951 0.95520 0.98366 0.95070 1.69838 1.19652 1.18655 1.44981 0.86570 0.82627 0.81386 0.77638 1.19818 1.21037 1.21053 1.22019 0.96050 0.97016 1.01070 1.21717 0.87112 0.97864 0.94394 0.91171 0.91758 0.89727 0.92197 0.88913 0.88570 0.90081 0.91475 0.91866 0.87656 0.94061 0.95457 0.93020 0.92130 0.92923 0.92207 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 8.41 37.16 0.31 -2.35 16 2 C 0.09 1.33 4.05 -26.15 -0.11 1.23 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 O -0.37 -5.38 11.19 -35.23 -0.39 -5.78 16 5 C 0.05 0.53 7.73 38.40 0.30 0.82 16 6 C -0.14 -1.69 6.68 -24.54 -0.16 -1.86 16 7 C -0.15 -2.02 2.54 -90.24 -0.23 -2.25 16 8 H 0.10 1.23 6.26 -51.93 -0.33 0.91 16 9 C 0.53 8.92 4.65 -10.99 -0.05 8.87 16 10 O -0.55 -10.88 14.47 5.55 0.08 -10.80 16 11 N -0.60 -10.31 2.46 -173.00 -0.43 -10.73 16 12 C 0.10 1.69 5.86 -3.93 -0.02 1.67 16 13 C -0.12 -2.61 5.07 -26.84 -0.14 -2.75 16 14 C 0.05 1.11 2.06 -91.74 -0.19 0.92 16 15 C -0.51 -13.28 8.56 -34.44 -0.29 -13.57 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -23.88 11.31 55.43 0.63 -23.25 16 19 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.12 -2.45 5.30 -26.59 -0.14 -2.59 16 24 C 0.11 1.98 6.44 -3.68 -0.02 1.96 16 25 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.44 5.30 -51.93 -0.28 1.16 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.10 1.34 6.89 -51.93 -0.36 0.99 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.97 5.53 -51.93 -0.29 0.68 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.11 2.48 6.03 -51.93 -0.31 2.16 16 35 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -28.65 311.32 -7.70 -36.35 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.41 Total: 2.39 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.84 Total: -8.36 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.20 Total: -33.98 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.31 Total: -16.58 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.65 -7.70 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334921088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.151 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds