Wall clock time and date at job start Mon Mar 30 2020 00:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46919 * 119.99878 * 2 1 3 5 5 C 1.53005 * 109.47306 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46511 * 299.99761 * 5 4 2 7 7 C 1.53001 * 109.47081 * 60.00479 * 6 5 4 8 8 C 1.52998 * 109.47487 * 239.99839 * 2 1 3 9 9 H 1.09007 * 109.47188 * 59.99923 * 8 2 1 10 10 C 1.50706 * 109.46973 * 300.00357 * 8 2 1 11 11 O 1.21278 * 120.00111 * 354.92580 * 10 8 2 12 12 N 1.34779 * 119.99796 * 174.92901 * 10 8 2 13 13 C 1.47063 * 136.05547 * 184.54884 * 12 10 8 14 14 C 1.53757 * 87.88823 * 152.96307 * 13 12 10 15 15 O 1.42900 * 114.39675 * 272.67797 * 14 13 12 16 16 C 1.50697 * 114.26620 * 139.79341 * 14 13 12 17 17 H 1.07998 * 119.99790 * 266.47705 * 16 14 13 18 18 C 1.37881 * 120.00179 * 86.47639 * 16 14 13 19 19 N 1.31512 * 119.99851 * 180.02562 * 18 16 14 20 20 Si 1.86801 * 119.99963 * 0.02562 * 18 16 14 21 21 H 1.48493 * 109.47160 * 89.99798 * 20 18 16 22 22 H 1.48493 * 109.46883 * 210.00158 * 20 18 16 23 23 H 1.48506 * 109.47031 * 330.00061 * 20 18 16 24 24 C 1.47061 * 136.05896 * 4.92115 * 12 10 8 25 25 H 1.08992 * 109.47059 * 300.00386 * 1 2 3 26 26 H 1.09007 * 109.46969 * 60.00372 * 1 2 3 27 27 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47307 * 300.00219 * 4 2 1 29 29 H 1.08999 * 109.47156 * 60.00184 * 4 2 1 30 30 H 1.08995 * 109.47374 * 59.99385 * 5 4 2 31 31 H 1.08996 * 109.47288 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.47488 * 299.99860 * 6 5 4 33 33 H 1.09002 * 109.46552 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46980 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47465 * 59.99367 * 7 6 5 36 36 H 1.09004 * 113.47238 * 267.69712 * 13 12 10 37 37 H 1.09003 * 113.46703 * 38.13413 * 13 12 10 38 38 H 0.96706 * 113.99908 * 273.59093 * 15 14 13 39 39 H 0.96999 * 120.00198 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.46694 * 321.86226 * 24 12 10 41 41 H 1.08998 * 113.46744 * 92.24685 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2497 6 6 4.0804 -1.4417 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0401 -0.7213 -1.2492 9 1 1.6767 -0.2074 -2.1393 10 6 1.5377 -2.1421 -1.2492 11 8 0.9181 -2.5662 -0.2967 12 7 1.7770 -2.9415 -2.3076 13 6 1.3999 -4.3042 -2.7121 14 6 1.5604 -3.8537 -4.1734 15 8 0.3870 -3.2707 -4.7436 16 6 2.2130 -4.8756 -5.0683 17 1 3.2802 -4.8478 -5.2311 18 6 1.4475 -5.8461 -5.6793 19 7 2.0171 -6.7381 -6.4599 20 14 -0.3987 -5.8938 -5.3983 21 1 -1.0773 -5.0635 -6.4253 22 1 -0.8785 -7.2955 -5.4986 23 1 -0.7076 -5.3603 -4.0472 24 6 2.5354 -2.8372 -3.5633 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6766 -0.2074 2.1392 29 1 1.6766 -1.7489 1.2492 30 1 3.9330 0.3070 1.2498 31 1 3.9333 -1.2349 2.1394 32 1 3.7174 -2.4695 0.0002 33 1 5.1704 -1.4410 0.0004 34 1 3.9346 -1.2339 -2.1389 35 1 3.9335 0.3073 -1.2487 36 1 2.1223 -5.0624 -2.4097 37 1 0.3758 -4.5678 -2.4475 38 1 -0.2252 -3.9138 -5.1270 39 1 1.4785 -7.4207 -6.8900 40 1 2.4788 -1.8510 -4.0240 41 1 3.5575 -3.2077 -3.4850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335209802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:44 Heat of formation + Delta-G solvation = -69.789176 kcal Electronic energy + Delta-G solvation = -21902.587230 eV Core-core repulsion = 18782.857264 eV Total energy + Delta-G solvation = -3119.729965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91941 -40.33524 -37.81981 -36.36073 -34.57003 -33.45251 -32.43449 -30.30139 -27.76258 -27.16914 -26.80735 -24.10654 -22.29648 -22.15090 -21.30447 -19.85770 -19.06571 -18.23146 -17.77534 -16.80431 -16.40838 -16.13157 -15.78979 -15.43144 -15.20375 -14.98980 -14.62252 -14.52487 -14.31489 -14.05140 -13.90183 -13.39622 -13.07676 -12.95257 -12.85508 -12.61301 -12.44301 -12.40182 -12.30509 -11.99253 -11.83582 -11.64372 -11.30886 -11.08560 -11.00637 -10.91653 -10.58104 -10.18599 -9.58561 -8.46564 -6.56126 1.17979 1.26106 1.33241 1.69133 1.96793 2.12237 2.74158 3.18630 3.50070 3.69050 3.80990 3.83243 4.02535 4.22346 4.25136 4.40256 4.43339 4.49416 4.55840 4.58051 4.59929 4.69803 4.70519 4.79014 4.86531 4.90333 4.92734 5.02612 5.07195 5.12446 5.23062 5.26078 5.32257 5.35412 5.42667 5.48969 5.71540 5.99009 6.51848 6.62817 6.90534 7.11959 7.24397 8.68583 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033250 B = 0.005615 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.897016 B = 4985.311023 C = 5342.922441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.064 4.064 3 H 0.100 0.900 4 C -0.132 4.132 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.107 4.107 8 C -0.096 4.096 9 H 0.100 0.900 10 C 0.540 3.460 11 O -0.575 6.575 12 N -0.639 5.639 13 C 0.067 3.933 14 C 0.181 3.819 15 O -0.555 6.555 16 C -0.535 4.535 17 H 0.069 0.931 18 C 0.033 3.967 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.249 1.249 22 H -0.283 1.283 23 H -0.252 1.252 24 C 0.130 3.870 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.353 0.647 39 H 0.274 0.726 40 H 0.091 0.909 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 13.865 10.618 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.082 4.082 3 H 0.118 0.882 4 C -0.169 4.169 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.145 4.145 8 C -0.117 4.117 9 H 0.118 0.882 10 C 0.332 3.668 11 O -0.457 6.457 12 N -0.373 5.373 13 C -0.056 4.056 14 C 0.140 3.860 15 O -0.367 6.367 16 C -0.573 4.573 17 H 0.087 0.913 18 C -0.169 4.169 19 N -0.556 5.556 20 Si 0.737 3.263 21 H -0.175 1.175 22 H -0.209 1.209 23 H -0.177 1.177 24 C 0.008 3.992 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.206 0.794 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.806 14.170 11.379 18.263 hybrid contribution -1.237 -1.493 -0.426 1.985 sum 0.569 12.676 10.954 16.763 Atomic orbital electron populations 1.21991 0.95918 1.01887 1.01632 1.20926 0.95256 0.99261 0.92765 0.88188 1.21864 0.96006 1.01932 0.97107 1.21503 0.95030 1.01287 0.97086 1.21561 1.01059 0.98075 0.95293 1.21580 0.91240 1.03179 0.98460 1.21446 0.98452 0.90336 1.01425 0.88192 1.20876 0.78614 0.88231 0.79069 1.90510 1.44042 1.77089 1.34029 1.49786 1.51189 1.16033 1.20281 1.24200 0.99717 0.85569 0.96156 1.20380 0.84312 0.92528 0.88748 1.86424 1.33853 1.38129 1.78309 1.21301 0.96177 1.11547 1.28293 0.91325 1.25683 1.02676 0.94649 0.93849 1.69960 1.38028 1.17026 1.30621 0.86455 0.81318 0.78274 0.80299 1.17480 1.20940 1.17671 1.23116 0.95923 1.00293 0.79900 0.91688 0.92885 0.93714 0.91659 0.92046 0.90000 0.92197 0.95338 0.90157 0.91489 0.87914 0.89234 0.93348 0.79418 0.91688 0.89036 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.90 71.98 0.64 -3.44 16 2 C -0.06 -1.49 2.46 -10.80 -0.03 -1.52 16 3 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.13 -3.26 4.93 30.59 0.15 -3.11 16 5 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 6 C -0.12 -2.77 5.70 30.60 0.17 -2.60 16 7 C -0.11 -2.29 5.38 30.61 0.16 -2.12 16 8 C -0.10 -2.51 2.40 -11.52 -0.03 -2.54 16 9 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 10 C 0.54 19.43 5.53 87.66 0.48 19.92 16 11 O -0.58 -23.94 12.16 -3.02 -0.04 -23.98 16 12 N -0.64 -24.42 3.67 -858.31 -3.15 -27.57 16 13 C 0.07 2.89 7.49 83.26 0.62 3.52 16 14 C 0.18 8.05 1.10 -11.12 -0.01 8.03 16 15 O -0.56 -25.28 13.33 -148.98 -1.99 -27.27 16 16 C -0.54 -27.49 9.28 25.60 0.24 -27.25 16 17 H 0.07 3.77 8.06 -2.91 -0.02 3.74 16 18 C 0.03 1.75 5.47 84.66 0.46 2.21 16 19 N -0.92 -52.17 13.96 21.45 0.30 -51.87 16 20 Si 0.91 39.85 24.42 68.60 1.68 41.53 16 21 H -0.25 -10.20 7.06 99.48 0.70 -9.49 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.25 -10.76 5.50 99.48 0.55 -10.21 16 24 C 0.13 4.69 6.38 83.17 0.53 5.22 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.49 5.70 -2.39 -0.01 1.48 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 2.02 5.33 -2.39 -0.01 2.01 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.03 0.83 7.22 -2.39 -0.02 0.81 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.48 6.67 -2.39 -0.02 1.47 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 3.77 8.10 -2.39 -0.02 3.75 16 37 H 0.05 2.18 7.15 -2.39 -0.02 2.16 16 38 H 0.35 15.59 3.16 -74.05 -0.23 15.35 16 39 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.11 3.58 8.10 -2.39 -0.02 3.56 16 Total: -1.00 -62.44 307.36 1.00 -61.44 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.62 Total: 33.50 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.58 Total: -5.77 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.85 Total: -79.44 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.02 Total: -51.25 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.68 Total: 41.53 kcal Total: -62.44 1.00 -61.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.351 kcal (2) G-P(sol) polarization free energy of solvation -62.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds