Wall clock time and date at job start Mon Mar 30 2020 00:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.62002 * 2 1 4 4 C 1.51262 * 109.62376 * 120.37433 * 2 1 3 5 5 O 1.20764 * 120.85411 * 351.04751 * 4 2 1 6 6 C 1.51278 * 118.29982 * 171.06401 * 4 2 1 7 7 C 1.53231 * 108.53409 * 308.65457 * 6 4 2 8 8 C 1.52956 * 109.40443 * 54.62714 * 7 6 4 9 9 H 1.09004 * 109.41547 * 56.43460 * 8 7 6 10 10 C 1.50698 * 109.41326 * 176.29317 * 8 7 6 11 11 O 1.21288 * 119.99889 * 34.91809 * 10 8 7 12 12 N 1.34781 * 119.99957 * 214.92195 * 10 8 7 13 13 C 1.46502 * 119.99808 * 185.41133 * 12 10 8 14 14 C 1.37094 * 120.00080 * 5.40527 * 12 10 8 15 15 H 1.08002 * 120.00106 * 5.83117 * 14 12 10 16 16 C 1.38946 * 120.00162 * 185.83089 * 14 12 10 17 17 N 1.31414 * 120.00300 * 354.89469 * 16 14 12 18 18 Si 1.86800 * 120.00163 * 174.88951 * 16 14 12 19 19 H 1.48504 * 109.47184 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47301 * 120.00451 * 18 16 14 21 21 H 1.48503 * 109.47214 * 239.99931 * 18 16 14 22 22 C 1.52955 * 109.81899 * 296.40228 * 8 7 6 23 23 C 1.53001 * 109.48392 * 183.57911 * 22 8 7 24 24 C 1.53005 * 109.47975 * 303.61565 * 22 8 7 25 25 H 1.08995 * 109.47611 * 299.62292 * 1 2 3 26 26 H 1.09011 * 109.46707 * 59.62293 * 1 2 3 27 27 H 1.08995 * 109.46951 * 179.61990 * 1 2 3 28 28 H 1.08998 * 109.62552 * 188.94368 * 6 4 2 29 29 H 1.08992 * 109.78434 * 68.46295 * 6 4 2 30 30 H 1.09003 * 109.48217 * 294.64733 * 7 6 4 31 31 H 1.09002 * 109.47887 * 174.60713 * 7 6 4 32 32 H 1.09004 * 109.46644 * 235.36307 * 13 12 10 33 33 H 1.08997 * 109.47207 * 115.36531 * 13 12 10 34 34 H 1.08999 * 109.47378 * 355.35773 * 13 12 10 35 35 H 0.97001 * 120.00434 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.47258 * 64.78571 * 23 22 8 37 37 H 1.09005 * 109.47105 * 184.78172 * 23 22 8 38 38 H 1.09005 * 109.46834 * 304.78275 * 23 22 8 39 39 H 1.09000 * 109.46677 * 60.00409 * 24 22 8 40 40 H 1.09004 * 109.46971 * 180.02562 * 24 22 8 41 41 H 1.08993 * 109.47141 * 300.00309 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0380 -0.7204 1.2292 5 8 1.2814 -1.0501 2.1108 6 6 3.5182 -1.0171 1.3261 7 6 3.9608 -1.7144 0.0355 8 6 3.5677 -0.8548 -1.1671 9 1 4.0039 0.1385 -1.0606 10 6 4.0826 -1.4951 -2.4303 11 8 4.1150 -2.7037 -2.5279 12 7 4.5073 -0.7249 -3.4516 13 6 4.8960 -1.3421 -4.7221 14 6 4.5753 0.6361 -3.3015 15 1 4.3796 1.0836 -2.3382 16 6 4.8960 1.4398 -4.3886 17 7 5.2319 0.8915 -5.5347 18 14 4.8494 3.2997 -4.2212 19 1 4.4443 3.6623 -2.8393 20 1 6.1969 3.8561 -4.5037 21 1 3.8704 3.8593 -5.1875 22 6 2.0447 -0.7341 -1.2425 23 6 1.6566 0.0515 -2.4968 24 6 1.4246 -2.1315 -1.3031 25 1 -0.3634 0.5079 0.8933 26 1 -0.3633 0.5197 -0.8867 27 1 -0.3633 -1.0276 -0.0068 28 1 3.7056 -1.6706 2.1781 29 1 4.0735 -0.0873 1.4489 30 1 3.4736 -2.6867 -0.0379 31 1 5.0424 -1.8494 0.0478 32 1 5.9110 -1.0381 -4.9781 33 1 4.2115 -1.0203 -5.5069 34 1 4.8550 -2.4271 -4.6265 35 1 5.4554 1.4526 -6.2938 36 1 1.9487 -0.5117 -3.3831 37 1 0.5783 0.2108 -2.5066 38 1 2.1662 1.0151 -2.4941 39 1 1.7008 -2.6906 -0.4091 40 1 0.3393 -2.0453 -1.3573 41 1 1.7918 -2.6540 -2.1864 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335709700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:17 Heat of formation + Delta-G solvation = -88.252975 kcal Electronic energy + Delta-G solvation = -22501.271541 eV Core-core repulsion = 19380.740925 eV Total energy + Delta-G solvation = -3120.530616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04620 -40.19000 -38.01755 -36.69463 -34.46776 -33.29061 -31.85918 -29.30183 -28.21290 -27.69878 -26.40967 -26.05008 -22.81889 -21.55717 -20.73990 -19.36177 -18.19577 -17.95683 -16.96938 -16.66506 -16.57266 -16.06641 -15.91348 -15.51575 -15.15120 -14.62466 -14.42089 -14.21314 -13.66927 -13.51901 -13.41127 -13.30632 -13.01378 -12.85201 -12.77962 -12.69862 -12.66825 -12.51780 -12.25270 -12.20733 -12.07705 -11.93402 -11.57537 -11.41577 -11.09824 -10.91000 -10.25743 -10.07660 -9.81225 -8.12767 -5.77638 0.99564 1.45926 1.52537 1.63447 2.10674 2.33220 3.00351 3.15997 3.24481 3.66904 3.73725 3.85779 4.09081 4.22415 4.28091 4.34624 4.43643 4.48366 4.58482 4.66882 4.79859 4.85032 4.88351 4.97590 4.99924 5.03504 5.07443 5.14792 5.17406 5.19685 5.23772 5.33928 5.40048 5.49221 5.53662 5.57883 5.63895 5.87910 6.50322 6.54732 7.21199 7.71285 8.09707 8.82314 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.007543 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.840428 B = 3711.079756 C = 4200.260829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 H 0.127 0.873 4 C 0.373 3.627 5 O -0.488 6.488 6 C -0.161 4.161 7 C -0.093 4.093 8 C -0.086 4.086 9 H 0.103 0.897 10 C 0.456 3.544 11 O -0.642 6.642 12 N -0.458 5.458 13 C 0.138 3.862 14 C -0.329 4.329 15 H 0.122 0.878 16 C -0.013 4.013 17 N -0.910 5.910 18 Si 0.984 3.016 19 H -0.244 1.244 20 H -0.288 1.288 21 H -0.285 1.285 22 C -0.026 4.026 23 C -0.131 4.131 24 C -0.142 4.142 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 3.664 9.106 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 H 0.144 0.856 4 C 0.251 3.749 5 O -0.363 6.363 6 C -0.199 4.199 7 C -0.131 4.131 8 C -0.107 4.107 9 H 0.121 0.879 10 C 0.246 3.754 11 O -0.531 6.531 12 N -0.175 5.175 13 C -0.005 4.005 14 C -0.456 4.456 15 H 0.140 0.860 16 C -0.213 4.213 17 N -0.551 5.551 18 Si 0.808 3.192 19 H -0.167 1.167 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.026 4.026 23 C -0.188 4.188 24 C -0.199 4.199 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.641 2.987 9.291 11.273 hybrid contribution 0.507 0.509 -0.872 1.130 sum -5.134 3.497 8.419 10.463 Atomic orbital electron populations 1.21751 0.92569 1.02491 1.02770 1.21934 0.98430 1.01602 0.92573 0.85562 1.25136 0.91264 0.73243 0.85288 1.90348 1.60879 1.44152 1.40959 1.22327 0.94225 1.04328 0.99005 1.21332 1.01651 0.98549 0.91569 1.21252 0.96324 1.00943 0.92161 0.87924 1.20482 0.82166 0.86388 0.86338 1.90483 1.63023 1.15941 1.83662 1.43968 1.55144 1.07185 1.11186 1.21232 1.00568 0.93153 0.85561 1.20164 1.46833 0.80565 0.98038 0.86033 1.26122 0.96039 1.04487 0.94686 1.70360 1.45476 1.36368 1.02853 0.84981 0.77345 0.77328 0.79546 1.16730 1.21437 1.21080 1.20225 0.92148 0.95432 0.94841 1.21865 1.01325 1.00406 0.95250 1.21997 1.00744 0.95848 1.01281 0.91852 0.90397 0.92810 0.88473 0.85733 0.92039 0.91093 0.92840 0.93560 0.95612 0.92556 0.95259 0.91130 0.91257 0.93282 0.91140 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 7.87 71.98 0.57 -2.58 16 2 C -0.13 -3.12 2.26 -11.29 -0.03 -3.15 16 3 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.37 9.86 5.60 29.46 0.17 10.03 16 5 O -0.49 -15.27 16.86 -1.46 -0.02 -15.29 16 6 C -0.16 -3.79 6.17 30.11 0.19 -3.60 16 7 C -0.09 -2.83 4.54 30.66 0.14 -2.69 16 8 C -0.09 -2.94 1.40 -11.57 -0.02 -2.96 16 9 H 0.10 3.33 5.71 -2.39 -0.01 3.32 16 10 C 0.46 20.52 4.97 87.66 0.44 20.96 16 11 O -0.64 -32.67 14.42 -3.05 -0.04 -32.72 16 12 N -0.46 -22.06 2.58 -658.89 -1.70 -23.76 16 13 C 0.14 6.99 8.87 127.77 1.13 8.13 16 14 C -0.33 -15.01 7.49 84.04 0.63 -14.38 16 15 H 0.12 4.94 5.21 -2.91 -0.02 4.92 16 16 C -0.01 -0.63 5.46 84.93 0.46 -0.16 16 17 N -0.91 -46.10 9.45 21.66 0.20 -45.90 16 18 Si 0.98 36.64 29.56 68.60 2.03 38.67 16 19 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 20 H -0.29 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 22 C -0.03 -0.78 0.32 -52.12 -0.02 -0.80 16 23 C -0.13 -4.23 7.01 71.98 0.50 -3.72 16 24 C -0.14 -4.61 7.04 71.98 0.51 -4.10 16 25 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 26 H 0.08 1.56 6.56 -2.38 -0.02 1.54 16 27 H 0.05 1.31 6.31 -2.39 -0.02 1.29 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 2.08 6.03 -2.39 -0.01 2.06 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 2.81 6.95 -2.38 -0.02 2.79 16 33 H 0.05 2.41 7.14 -2.39 -0.02 2.39 16 34 H 0.03 1.29 6.91 -2.39 -0.02 1.27 16 35 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 36 H 0.03 1.15 6.97 -2.39 -0.02 1.13 16 37 H 0.07 1.89 6.42 -2.38 -0.02 1.87 16 38 H 0.07 2.23 6.85 -2.38 -0.02 2.21 16 39 H 0.05 1.59 5.60 -2.39 -0.01 1.57 16 40 H 0.07 1.99 6.34 -2.39 -0.02 1.98 16 41 H 0.04 1.58 6.56 -2.39 -0.02 1.57 16 Total: -1.00 -59.50 301.67 6.17 -53.33 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 1.04 Total: 24.69 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.67 Total: 0.97 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.50 Total: -69.65 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.07 Total: -48.01 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -59.50 6.17 -53.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335709700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.920 kcal (2) G-P(sol) polarization free energy of solvation -59.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds