Wall clock time and date at job start Mon Mar 30 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.63032 * 2 1 4 4 C 1.51272 * 109.78173 * 239.52458 * 2 1 3 5 5 O 1.20757 * 120.85011 * 111.52197 * 4 2 1 6 6 C 1.51269 * 118.30016 * 291.54003 * 4 2 1 7 7 C 1.53235 * 108.53613 * 308.65099 * 6 4 2 8 8 C 1.52960 * 109.40050 * 54.62637 * 7 6 4 9 9 H 1.09002 * 109.41412 * 56.51506 * 8 7 6 10 10 C 1.50705 * 109.40934 * 176.29212 * 8 7 6 11 11 O 1.21282 * 119.99640 * 32.69727 * 10 8 7 12 12 N 1.34772 * 120.00087 * 212.69122 * 10 8 7 13 13 C 1.46503 * 120.00110 * 180.02562 * 12 10 8 14 14 C 1.50704 * 109.46993 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99302 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99417 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00560 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47392 * 89.99835 * 18 16 14 20 20 H 1.48499 * 109.47116 * 210.00128 * 18 16 14 21 21 H 1.48504 * 109.46921 * 329.99885 * 18 16 14 22 22 C 1.52954 * 109.82197 * 296.39883 * 8 7 6 23 23 C 1.53004 * 109.48085 * 303.62347 * 22 8 7 24 24 C 1.52991 * 109.49572 * 183.58671 * 22 8 7 25 25 H 1.09002 * 109.46882 * 299.99839 * 1 2 3 26 26 H 1.08996 * 109.47488 * 59.99354 * 1 2 3 27 27 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.62728 * 188.93951 * 6 4 2 29 29 H 1.08998 * 109.62238 * 68.36517 * 6 4 2 30 30 H 1.08994 * 109.48300 * 294.64751 * 7 6 4 31 31 H 1.08997 * 109.47665 * 174.60473 * 7 6 4 32 32 H 0.97004 * 120.00180 * 359.97438 * 12 10 8 33 33 H 1.08994 * 109.47207 * 300.00379 * 13 12 10 34 34 H 1.09007 * 109.46948 * 60.00316 * 13 12 10 35 35 H 0.97000 * 119.99739 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47061 * 179.97438 * 23 22 8 37 37 H 1.08992 * 109.47189 * 299.92706 * 23 22 8 38 38 H 1.08999 * 109.46744 * 59.93126 * 23 22 8 39 39 H 1.08999 * 109.47395 * 304.87809 * 24 22 8 40 40 H 1.09001 * 109.47260 * 64.88304 * 24 22 8 41 41 H 1.08999 * 109.47356 * 184.87787 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0419 -0.7219 -1.2268 5 8 2.6093 -0.1210 -2.1072 6 6 1.8244 -2.2158 -1.3227 7 6 2.3285 -2.8655 -0.0297 8 6 1.6470 -2.2050 1.1699 9 1 0.5653 -2.2837 1.0607 10 6 2.0732 -2.9038 2.4354 11 8 3.1872 -3.3755 2.5218 12 7 1.2165 -3.0044 3.4709 13 6 1.6310 -3.6832 4.7012 14 6 0.4984 -3.6577 5.6950 15 1 -0.4368 -3.1837 5.4359 16 6 0.6561 -4.2396 6.9350 17 7 -0.3325 -4.2178 7.8021 18 14 2.2739 -5.0588 7.3834 19 1 3.1765 -4.0610 8.0120 20 1 2.0195 -6.1671 8.3385 21 1 2.9118 -5.5995 6.1562 22 6 2.0446 -0.7300 1.2451 23 6 3.5690 -0.6151 1.3103 24 6 1.4313 -0.0990 2.4966 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.3798 -2.6128 -2.1725 29 1 0.7617 -2.4238 -1.4468 30 1 3.4077 -2.7331 0.0470 31 1 2.0924 -3.9295 -0.0416 32 1 0.3257 -2.6267 3.4019 33 1 1.8935 -4.7166 4.4753 34 1 2.4964 -3.1726 5.1240 35 1 -0.2214 -4.6268 8.6746 36 1 3.8522 0.4361 1.3634 37 1 3.9349 -1.1344 2.1959 38 1 4.0057 -1.0652 0.4188 39 1 0.3528 -0.2566 2.4917 40 1 1.8621 -0.5610 3.3848 41 1 1.6421 0.9704 2.5049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335886773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:28 Heat of formation + Delta-G solvation = -121.086584 kcal Electronic energy + Delta-G solvation = -21612.256706 eV Core-core repulsion = 18490.302318 eV Total energy + Delta-G solvation = -3121.954388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20977 -40.27535 -38.24873 -36.14842 -34.40098 -34.12393 -32.41601 -30.40751 -28.69432 -28.09411 -25.61072 -24.56549 -23.26282 -21.94860 -21.12452 -19.31931 -18.70614 -17.77582 -17.19863 -16.93721 -16.74126 -16.25648 -15.78593 -15.68850 -15.19895 -15.15781 -14.69135 -14.48208 -14.27412 -13.88083 -13.65291 -13.52672 -13.34641 -13.05857 -12.88641 -12.83439 -12.70684 -12.57261 -12.45198 -12.24937 -11.93268 -11.75677 -11.62648 -11.61260 -11.24404 -10.89651 -10.56549 -10.32266 -9.84351 -8.37870 -6.43655 0.93043 1.32518 1.35839 1.47138 1.76693 2.28877 2.48909 2.98124 3.08144 3.43783 3.56153 3.69393 3.88502 4.05500 4.09209 4.24783 4.27514 4.39498 4.49753 4.59409 4.65112 4.72604 4.80506 4.85283 4.88997 4.92834 4.98124 5.04542 5.06550 5.14035 5.15234 5.20373 5.29499 5.32682 5.37065 5.51609 5.58896 6.11830 6.47337 6.58124 6.90839 7.19283 7.47727 8.76720 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.004856 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.867705 B = 5764.161265 C = 6029.808503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 H 0.098 0.902 4 C 0.372 3.628 5 O -0.497 6.497 6 C -0.162 4.162 7 C -0.097 4.097 8 C -0.096 4.096 9 H 0.126 0.874 10 C 0.511 3.489 11 O -0.592 6.592 12 N -0.701 5.701 13 C 0.232 3.768 14 C -0.541 4.541 15 H 0.063 0.937 16 C 0.029 3.971 17 N -0.931 5.931 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.034 4.034 23 C -0.150 4.150 24 C -0.151 4.151 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.271 0.729 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 7.559 -16.845 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 H 0.116 0.884 4 C 0.250 3.750 5 O -0.372 6.372 6 C -0.199 4.199 7 C -0.135 4.135 8 C -0.117 4.117 9 H 0.144 0.856 10 C 0.298 3.702 11 O -0.474 6.474 12 N -0.350 5.350 13 C 0.108 3.892 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.172 4.172 17 N -0.570 5.570 18 Si 0.757 3.243 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.034 4.034 23 C -0.207 4.207 24 C -0.208 4.208 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.150 0.850 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.244 0.756 33 H 0.028 0.972 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.268 7.474 -17.031 18.642 hybrid contribution 0.443 -0.422 0.914 1.100 sum 1.711 7.052 -16.117 17.676 Atomic orbital electron populations 1.21929 0.90299 1.04245 1.04027 1.21944 0.99662 1.00248 0.92000 0.88422 1.25265 0.72395 0.92122 0.85200 1.90391 1.33974 1.71579 1.41304 1.22330 1.06045 0.92479 0.99032 1.21379 1.00716 1.00336 0.91086 1.21531 1.03885 0.94861 0.91442 0.85567 1.21095 0.84486 0.79094 0.85487 1.90630 1.22559 1.50666 1.83517 1.46102 1.17468 1.57037 1.14428 1.19059 0.94970 0.92086 0.83103 1.21288 0.99916 1.37885 0.98774 0.91923 1.25537 0.99619 0.95950 0.96073 1.69976 1.33594 1.45695 1.07721 0.85936 0.80359 0.79148 0.78897 1.19271 1.20032 1.18572 1.20349 0.95488 0.92046 0.95549 1.22025 0.95041 1.01986 1.01670 1.22059 1.02129 1.01454 0.95155 0.89608 0.91382 0.90215 0.88601 0.85016 0.91804 0.89883 0.75581 0.97178 0.97457 0.91969 0.91410 0.93707 0.92919 0.89771 0.94188 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.39 71.98 0.60 -1.12 16 2 C -0.12 -2.02 2.23 -11.28 -0.03 -2.04 16 3 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.37 7.49 5.10 29.46 0.15 7.64 16 5 O -0.50 -13.55 17.89 -1.44 -0.03 -13.58 16 6 C -0.16 -2.58 5.90 30.11 0.18 -2.40 16 7 C -0.10 -2.04 4.51 30.66 0.14 -1.90 16 8 C -0.10 -2.15 1.61 -11.57 -0.02 -2.17 16 9 H 0.13 2.04 6.41 -2.39 -0.02 2.03 16 10 C 0.51 17.23 5.15 87.66 0.45 17.68 16 11 O -0.59 -24.95 15.19 -3.04 -0.05 -24.99 16 12 N -0.70 -25.70 4.77 -466.77 -2.23 -27.93 16 13 C 0.23 10.89 4.50 85.63 0.38 11.28 16 14 C -0.54 -28.69 9.83 25.60 0.25 -28.44 16 15 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 16 C 0.03 1.57 5.47 84.65 0.46 2.03 16 17 N -0.93 -54.44 13.96 21.45 0.30 -54.14 16 18 Si 0.93 43.38 27.47 68.60 1.88 45.26 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 22 C -0.03 -0.70 0.32 -52.12 -0.02 -0.72 16 23 C -0.15 -3.78 7.57 71.98 0.54 -3.23 16 24 C -0.15 -3.14 7.21 71.98 0.52 -2.62 16 25 H 0.09 0.88 6.50 -2.39 -0.02 0.87 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.73 6.01 -2.39 -0.01 0.72 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.13 1.32 7.82 -2.39 -0.02 1.30 16 30 H 0.06 1.62 6.03 -2.39 -0.01 1.60 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.41 12.83 8.31 -92.71 -0.77 12.06 16 33 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 34 H 0.01 0.37 7.57 -2.38 -0.02 0.35 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.39 6.65 -2.39 -0.02 1.37 16 38 H 0.05 1.34 5.60 -2.39 -0.01 1.33 16 39 H 0.08 1.42 6.66 -2.39 -0.02 1.41 16 40 H 0.04 1.10 6.91 -2.39 -0.02 1.08 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.12 314.49 3.72 -65.40 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.21 Total: 15.97 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.62 Total: -6.00 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.93 Total: -82.07 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.07 Total: -38.57 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Total: -69.12 3.72 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335886773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.683 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds