Wall clock time and date at job start Mon Mar 30 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 110.35581 * 2 1 4 4 C 1.54946 * 110.31064 * 237.86136 * 2 1 3 5 5 C 1.55303 * 100.94379 * 204.63930 * 4 2 1 6 6 H 1.09001 * 110.84846 * 152.32124 * 5 4 2 7 7 C 1.53000 * 110.84774 * 275.94118 * 5 4 2 8 8 C 1.54381 * 102.25205 * 34.13190 * 5 4 2 9 9 H 1.09004 * 109.90699 * 98.20181 * 8 5 4 10 10 C 1.50700 * 109.82919 * 219.12925 * 8 5 4 11 11 O 1.21288 * 119.99900 * 114.58544 * 10 8 5 12 12 N 1.34776 * 120.00129 * 294.58648 * 10 8 5 13 13 C 1.46507 * 119.99899 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.46978 * 174.90817 * 13 12 10 15 15 C 1.50698 * 115.55228 * 304.56786 * 14 13 12 16 16 H 1.08006 * 120.00400 * 95.19643 * 15 14 13 17 17 C 1.37881 * 119.99660 * 275.19757 * 15 14 13 18 18 N 1.31509 * 120.00024 * 6.20327 * 17 15 14 19 19 Si 1.86804 * 119.99933 * 185.92466 * 17 15 14 20 20 H 1.48503 * 109.47012 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47072 * 120.00177 * 19 17 15 22 22 H 1.48500 * 109.47012 * 240.00411 * 19 17 15 23 23 C 1.53003 * 117.49613 * 90.23151 * 14 13 12 24 24 C 1.53000 * 117.49963 * 158.89287 * 14 13 12 25 25 O 1.43236 * 107.59139 * 338.64193 * 8 5 4 26 26 H 1.09005 * 109.46749 * 299.30821 * 1 2 3 27 27 H 1.08996 * 109.47058 * 59.30436 * 1 2 3 28 28 H 1.08993 * 109.47275 * 179.30812 * 1 2 3 29 29 H 1.09003 * 111.12241 * 322.56073 * 4 2 1 30 30 H 1.08998 * 111.12913 * 86.67534 * 4 2 1 31 31 H 1.09000 * 109.47026 * 172.82823 * 7 5 4 32 32 H 1.09000 * 109.46746 * 292.83014 * 7 5 4 33 33 H 1.08999 * 109.46918 * 52.83259 * 7 5 4 34 34 H 0.96995 * 120.00217 * 0.02562 * 12 10 8 35 35 H 1.08994 * 109.46842 * 54.91023 * 13 12 10 36 36 H 1.09003 * 109.46938 * 294.90865 * 13 12 10 37 37 H 0.96996 * 120.00156 * 5.09757 * 18 17 15 38 38 H 1.08998 * 117.49861 * 215.00040 * 23 14 13 39 39 H 1.09002 * 117.50155 * 0.02762 * 23 14 13 40 40 H 1.09003 * 117.49502 * 359.97438 * 24 14 13 41 41 H 1.08996 * 117.49859 * 144.97887 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0678 -0.7730 -1.2305 5 6 3.4699 -1.2025 -0.7191 6 1 3.7966 -2.1205 -1.2076 7 6 4.4911 -0.0817 -0.9240 8 6 3.2113 -1.4420 0.7840 9 1 3.0630 -2.5057 0.9702 10 6 4.3813 -0.9402 1.5904 11 8 4.2385 -0.0043 2.3485 12 7 5.5864 -1.5314 1.4691 13 6 6.7237 -1.0440 2.2535 14 6 7.9288 -1.9591 2.0275 15 6 7.6984 -3.4203 2.3158 16 1 7.4300 -4.0930 1.5146 17 6 7.8303 -3.8982 3.6024 18 7 8.0364 -3.0623 4.5964 19 14 7.7085 -5.7325 3.9344 20 1 7.4695 -6.4518 2.6574 21 1 8.9764 -6.2108 4.5417 22 1 6.5833 -5.9928 4.8679 23 6 8.8784 -1.6065 0.8809 24 6 9.3157 -1.3891 2.3317 25 8 2.0286 -0.7168 1.1406 26 1 -0.3633 0.5031 0.8962 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0275 -0.0124 29 1 1.4470 -1.6415 -1.4508 30 1 2.1489 -0.1205 -2.0997 31 1 5.4314 -0.3549 -0.4453 32 1 4.6566 0.0683 -1.9909 33 1 4.1126 0.8399 -0.4819 34 1 5.7007 -2.2797 0.8626 35 1 6.4616 -1.0430 3.3115 36 1 6.9734 -0.0303 1.9401 37 1 8.0220 -2.1057 4.4367 38 1 9.3366 -2.4313 0.3351 39 1 8.6449 -0.7222 0.2878 40 1 9.3695 -0.3619 2.6924 41 1 10.0613 -2.0708 2.7407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337012099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:16 Heat of formation + Delta-G solvation = -93.164134 kcal Electronic energy + Delta-G solvation = -21349.699328 eV Core-core repulsion = 18228.955748 eV Total energy + Delta-G solvation = -3120.743580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72069 -39.76317 -38.58408 -35.39572 -34.22713 -33.94410 -33.04778 -29.02541 -27.87802 -27.16282 -26.44687 -23.18246 -22.83361 -21.89806 -21.56283 -20.81400 -18.82992 -18.09281 -17.64929 -17.11819 -16.70561 -16.04292 -15.93381 -15.61946 -15.16598 -14.71246 -14.56532 -14.43109 -14.34347 -13.90425 -13.54845 -13.46929 -13.33348 -12.91031 -12.86452 -12.66346 -12.55096 -12.22452 -12.13221 -11.90350 -11.88676 -11.55781 -11.49386 -11.13716 -10.56323 -10.53337 -10.49081 -10.18689 -9.89650 -8.51152 -6.28488 1.56165 1.59961 1.63410 1.77798 2.09607 2.59455 2.86518 3.23825 3.26096 3.34608 3.68423 3.72367 3.97864 4.05486 4.11722 4.24172 4.34222 4.36820 4.44535 4.48125 4.52599 4.57780 4.71667 4.78761 4.81921 4.83958 4.87951 4.99414 5.05802 5.07144 5.11734 5.28287 5.31170 5.32829 5.45336 5.54306 5.96340 6.14031 6.26907 6.66741 6.70983 7.29686 7.55282 8.86578 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.005281 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.521806 B = 5300.871423 C = 5763.789498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 H 0.055 0.945 4 C -0.130 4.130 5 C -0.108 4.108 6 H 0.127 0.873 7 C -0.157 4.157 8 C 0.067 3.933 9 H 0.120 0.880 10 C 0.495 3.505 11 O -0.593 6.593 12 N -0.689 5.689 13 C 0.174 3.826 14 C -0.020 4.020 15 C -0.570 4.570 16 H 0.058 0.942 17 C -0.021 4.021 18 N -0.934 5.934 19 Si 1.111 2.889 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.292 1.292 23 C -0.158 4.158 24 C -0.181 4.181 25 O -0.381 6.381 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.412 0.588 35 H 0.018 0.982 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 2.039 -16.567 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.073 0.927 4 C -0.168 4.168 5 C -0.127 4.127 6 H 0.145 0.855 7 C -0.214 4.214 8 C 0.006 3.994 9 H 0.137 0.863 10 C 0.283 3.717 11 O -0.474 6.474 12 N -0.340 5.340 13 C 0.049 3.951 14 C -0.021 4.021 15 C -0.608 4.608 16 H 0.076 0.924 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.935 3.065 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.219 1.219 23 C -0.195 4.195 24 C -0.219 4.219 25 O -0.300 6.300 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.248 0.752 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.814 1.572 -14.647 18.275 hybrid contribution 0.436 1.233 -0.561 1.424 sum -10.378 2.806 -15.209 18.625 Atomic orbital electron populations 1.21862 0.91737 1.03415 1.03054 1.23306 0.96264 0.95284 0.85057 0.92742 1.23390 0.93906 1.01693 0.97772 1.22717 0.97520 1.01777 0.90679 0.85472 1.22001 0.98510 0.97351 1.03557 1.22864 0.83675 0.97424 0.95426 0.86301 1.21624 0.84956 0.82647 0.82511 1.90630 1.84879 1.31159 1.40761 1.45740 1.08339 1.35714 1.44230 1.20615 0.86434 0.94897 0.93138 1.19337 0.87137 0.94720 1.00856 1.21505 1.51673 0.91824 0.95781 0.92356 1.27004 0.92830 1.09509 0.92785 1.70775 1.46926 1.04597 1.34696 0.83010 0.76700 0.70623 0.76199 1.18715 1.21183 1.21902 1.22930 1.04425 1.02054 0.90117 1.22664 0.99922 0.99567 0.99723 1.88504 1.39779 1.65111 1.36626 0.93180 0.88520 0.91243 0.87869 0.87261 0.92796 0.88974 0.94489 0.75185 0.96361 0.94075 0.92711 0.89268 0.88776 0.90539 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.62 71.98 0.69 -1.80 16 2 C 0.06 1.32 3.77 31.26 0.12 1.44 16 3 H 0.05 1.38 7.73 -2.38 -0.02 1.36 16 4 C -0.13 -2.02 6.07 32.05 0.19 -1.83 16 5 C -0.11 -2.17 3.58 -9.53 -0.03 -2.21 16 6 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.16 -3.56 8.22 71.98 0.59 -2.97 16 8 C 0.07 1.99 3.88 30.32 0.12 2.11 16 9 H 0.12 3.12 8.14 -2.39 -0.02 3.11 16 10 C 0.50 19.65 5.50 87.66 0.48 20.13 16 11 O -0.59 -29.54 16.52 15.74 0.26 -29.28 16 12 N -0.69 -26.79 4.02 -463.05 -1.86 -28.65 16 13 C 0.17 7.94 5.49 86.38 0.47 8.42 16 14 C -0.02 -0.90 1.03 -52.93 -0.05 -0.96 16 15 C -0.57 -28.91 8.26 25.60 0.21 -28.69 16 16 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 17 C -0.02 -1.14 5.39 84.66 0.46 -0.69 16 18 N -0.93 -55.65 13.47 21.45 0.29 -55.36 16 19 Si 1.11 48.52 29.91 68.60 2.05 50.57 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.16 -6.05 9.93 30.62 0.30 -5.75 16 24 C -0.18 -8.01 8.91 30.62 0.27 -7.74 16 25 O -0.38 -12.47 10.25 -130.19 -1.33 -13.81 16 26 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.22 8.06 -2.39 -0.02 1.20 16 30 H 0.11 1.21 8.04 -2.39 -0.02 1.19 16 31 H 0.05 1.46 6.05 -2.39 -0.01 1.44 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 0.99 7.47 -2.39 -0.02 0.97 16 34 H 0.41 14.12 8.15 -92.71 -0.76 13.37 16 35 H 0.02 0.99 7.50 -2.39 -0.02 0.97 16 36 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.26 15.92 6.13 -92.71 -0.57 15.35 16 38 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -71.34 331.58 3.69 -67.65 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.45 Total: 29.40 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.83 Total: -20.53 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.57 Total: -84.01 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.07 Total: -43.09 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.05 Total: 50.57 kcal Total: -71.34 3.69 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337012099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.511 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds