Wall clock time and date at job start Mon Mar 30 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47121 * 2 1 4 4 C 1.50704 * 109.46910 * 240.00418 * 2 1 3 5 5 H 1.07997 * 120.00163 * 240.00047 * 4 2 1 6 6 C 1.37878 * 119.99879 * 59.99936 * 4 2 1 7 7 N 1.31513 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00035 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47214 * 89.99807 * 8 6 4 10 10 H 1.48494 * 109.47056 * 210.00220 * 8 6 4 11 11 H 1.48503 * 109.46937 * 330.00183 * 8 6 4 12 12 N 1.46500 * 109.47275 * 120.00681 * 2 1 3 13 13 C 1.46505 * 120.00087 * 59.99619 * 12 2 1 14 14 C 1.34776 * 119.99866 * 239.99921 * 12 2 1 15 15 O 1.21286 * 119.99810 * 355.00846 * 14 12 2 16 16 C 1.50694 * 119.99794 * 175.01232 * 14 12 2 17 17 H 1.09001 * 109.41956 * 25.47231 * 16 14 12 18 18 C 1.52953 * 109.41303 * 265.60733 * 16 14 12 19 19 C 1.53248 * 109.39835 * 176.22597 * 18 16 14 20 20 C 1.51266 * 108.48179 * 54.74060 * 19 18 16 21 21 O 1.20759 * 120.85524 * 128.63068 * 20 19 18 22 22 C 1.51272 * 118.30043 * 308.60898 * 20 19 18 23 23 C 1.52963 * 109.41212 * 145.32881 * 16 14 12 24 24 H 1.08998 * 109.48109 * 63.70875 * 23 16 14 25 25 C 1.52999 * 109.48340 * 303.68305 * 23 16 14 26 26 H 1.08997 * 109.46693 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46821 * 299.99687 * 1 2 3 28 28 H 1.08992 * 109.46970 * 59.99701 * 1 2 3 29 29 H 0.96995 * 120.00190 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.46835 * 95.08854 * 13 12 2 31 31 H 1.08997 * 109.47063 * 215.09350 * 13 12 2 32 32 H 1.09002 * 109.46646 * 335.09181 * 13 12 2 33 33 H 1.08999 * 109.48696 * 296.27629 * 18 16 14 34 34 H 1.09004 * 109.47903 * 56.32283 * 18 16 14 35 35 H 1.08994 * 109.68833 * 295.02039 * 19 18 16 36 36 H 1.09000 * 109.77484 * 174.50821 * 19 18 16 37 37 H 1.09002 * 109.62557 * 291.63400 * 22 20 19 38 38 H 1.08996 * 109.78792 * 171.15981 * 22 20 19 39 39 H 1.09000 * 109.47377 * 56.93132 * 25 23 16 40 40 H 1.09000 * 109.47513 * 176.92781 * 25 23 16 41 41 H 1.08999 * 109.46924 * 296.92892 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4121 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7581 -3.7125 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0934 1.4278 14 6 2.7933 -0.0358 2.0833 15 8 3.1611 1.0957 1.8479 16 6 3.2027 -0.7095 3.3675 17 1 3.1923 -1.7907 3.2290 18 6 2.2203 -0.3296 4.4766 19 6 2.5813 -1.0882 5.7582 20 6 4.0308 -0.8088 6.0887 21 8 4.3534 -0.4318 7.1897 22 6 5.0659 -1.0141 5.0049 23 6 4.6138 -0.2597 3.7502 24 1 4.6118 0.8117 3.9509 25 6 5.5754 -0.5615 2.5991 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7081 1.1610 -3.4843 30 1 2.4602 -2.7359 1.0510 31 1 1.5353 -2.2637 2.4966 32 1 0.7345 -2.3240 0.9081 33 1 2.2763 0.7434 4.6600 34 1 1.2078 -0.5943 4.1717 35 1 2.4407 -2.1579 5.6037 36 1 1.9472 -0.7502 6.5779 37 1 5.1553 -2.0771 4.7807 38 1 6.0295 -0.6279 5.3371 39 1 5.2227 -0.0695 1.6926 40 1 6.5696 -0.1917 2.8497 41 1 5.6189 -1.6381 2.4348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343805344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:11 Heat of formation + Delta-G solvation = -91.593760 kcal Electronic energy + Delta-G solvation = -21500.113658 eV Core-core repulsion = 18379.438175 eV Total energy + Delta-G solvation = -3120.675483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45839 -39.03035 -36.48223 -35.22655 -32.95825 -32.51613 -30.07023 -28.72080 -26.89811 -26.12769 -25.22008 -23.09305 -21.85554 -20.41568 -19.31307 -18.25835 -16.73406 -16.23716 -15.90427 -15.65917 -15.24187 -14.97755 -14.75009 -14.29738 -13.82627 -13.50933 -13.10740 -12.76855 -12.65016 -12.39572 -12.25531 -12.08482 -11.91201 -11.60206 -11.54368 -11.46800 -11.09435 -10.98374 -10.82858 -10.76638 -10.70133 -10.46474 -10.27856 -10.18980 -9.48966 -9.18683 -8.85567 -8.44467 -7.60729 -6.08874 -4.16794 1.82872 3.24544 3.29695 3.32669 3.35660 3.85851 4.00504 4.37849 4.54690 4.60771 4.81741 4.87813 5.09428 5.18050 5.22627 5.28469 5.33177 5.51665 5.58628 5.63968 5.70110 5.73908 5.81034 5.93992 6.00928 6.04726 6.14698 6.26200 6.35493 6.48900 6.72928 6.78975 7.02717 7.36347 7.41437 7.49942 7.69901 7.99271 8.18244 8.51445 8.82160 9.04143 9.49967 10.96382 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.004944 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.483247 B = 5662.381806 C = 5984.951195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.112 4.112 17 H 0.093 0.907 18 C -0.101 4.101 19 C -0.167 4.167 20 C 0.364 3.636 21 O -0.464 6.464 22 C -0.164 4.164 23 C -0.066 4.066 24 H 0.085 0.915 25 C -0.151 4.151 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -7.340 12.439 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.134 4.134 17 H 0.111 0.889 18 C -0.139 4.139 19 C -0.204 4.204 20 C 0.240 3.760 21 O -0.338 6.338 22 C -0.202 4.202 23 C -0.085 4.085 24 H 0.103 0.897 25 C -0.208 4.208 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.009 -6.421 12.715 14.559 hybrid contribution 0.187 -0.711 -1.066 1.295 sum 3.197 -7.132 11.649 14.028 Atomic orbital electron populations 1.22107 0.98294 0.99341 1.00835 1.18938 0.90727 0.94517 0.80119 0.91940 1.21308 1.31757 1.12904 0.90287 0.92330 1.24892 0.94979 0.94951 0.98962 1.69871 1.36409 1.22614 1.23749 0.86509 0.79178 0.79305 0.82479 1.20646 1.21120 1.19959 1.48251 1.48990 1.11512 1.23600 1.21583 1.01533 0.83322 0.99435 1.20153 0.78837 0.86549 0.84591 1.90652 1.55161 1.19219 1.77738 1.21521 0.95806 1.01803 0.94269 0.88880 1.21404 0.99374 1.01166 0.91988 1.22315 0.95295 1.02947 0.99888 1.24951 0.92439 0.71117 0.87501 1.90396 1.84255 1.34257 1.24865 1.22421 0.99147 1.03090 0.95535 1.20909 0.93314 1.00818 0.93472 0.89652 1.21880 0.98569 1.01516 0.98812 0.95110 0.97029 0.88815 0.92698 0.93444 0.93006 0.90615 0.90586 0.90086 0.88189 0.89138 0.88290 0.89172 0.90748 0.92570 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.96 37.16 0.33 -3.07 16 2 C 0.26 6.35 2.63 -69.08 -0.18 6.17 16 3 H 0.06 1.81 6.91 -51.93 -0.36 1.45 16 4 C -0.52 -13.80 8.37 -34.44 -0.29 -14.09 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.59 -11.85 2.75 -175.26 -0.48 -12.33 16 13 C 0.09 1.31 9.03 59.85 0.54 1.85 16 14 C 0.51 9.75 5.55 -10.99 -0.06 9.69 16 15 O -0.55 -12.78 14.86 5.55 0.08 -12.70 16 16 C -0.11 -1.50 1.25 -91.82 -0.11 -1.61 16 17 H 0.09 1.04 6.26 -51.93 -0.33 0.72 16 18 C -0.10 -1.17 5.15 -26.63 -0.14 -1.30 16 19 C -0.17 -1.56 6.17 -27.48 -0.17 -1.73 16 20 C 0.36 4.17 6.72 -28.48 -0.19 3.98 16 21 O -0.46 -6.85 17.89 6.00 0.11 -6.74 16 22 C -0.16 -1.67 5.45 -27.48 -0.15 -1.82 16 23 C -0.07 -0.84 1.94 -90.52 -0.18 -1.02 16 24 H 0.09 1.24 7.97 -51.93 -0.41 0.83 16 25 C -0.15 -2.01 8.93 37.16 0.33 -1.68 16 26 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.08 1.21 6.44 -51.93 -0.33 0.87 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -31.37 323.63 -6.69 -38.06 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.52 Total: 0.29 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.36 Total: -3.01 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.14 Total: -36.47 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.19 Total: -19.44 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.37 -6.69 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343805344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.535 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds