Wall clock time and date at job start Mon Mar 30 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47121 * 2 1 4 4 C 1.50704 * 109.46910 * 240.00418 * 2 1 3 5 5 H 1.07997 * 120.00163 * 240.00047 * 4 2 1 6 6 C 1.37878 * 119.99879 * 59.99936 * 4 2 1 7 7 N 1.31513 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00035 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47214 * 89.99807 * 8 6 4 10 10 H 1.48494 * 109.47056 * 210.00220 * 8 6 4 11 11 H 1.48503 * 109.46937 * 330.00183 * 8 6 4 12 12 N 1.46500 * 109.47275 * 120.00681 * 2 1 3 13 13 C 1.46505 * 120.00087 * 59.99619 * 12 2 1 14 14 C 1.34776 * 119.99866 * 239.99921 * 12 2 1 15 15 O 1.21286 * 119.99810 * 355.00846 * 14 12 2 16 16 C 1.50694 * 119.99794 * 175.01232 * 14 12 2 17 17 H 1.09001 * 109.41956 * 25.47231 * 16 14 12 18 18 C 1.52953 * 109.41303 * 265.60733 * 16 14 12 19 19 C 1.53248 * 109.39835 * 176.22597 * 18 16 14 20 20 C 1.51266 * 108.48179 * 54.74060 * 19 18 16 21 21 O 1.20759 * 120.85524 * 128.63068 * 20 19 18 22 22 C 1.51272 * 118.30043 * 308.60898 * 20 19 18 23 23 C 1.52963 * 109.41212 * 145.32881 * 16 14 12 24 24 H 1.08998 * 109.48109 * 63.70875 * 23 16 14 25 25 C 1.52999 * 109.48340 * 303.68305 * 23 16 14 26 26 H 1.08997 * 109.46693 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46821 * 299.99687 * 1 2 3 28 28 H 1.08992 * 109.46970 * 59.99701 * 1 2 3 29 29 H 0.96995 * 120.00190 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.46835 * 95.08854 * 13 12 2 31 31 H 1.08997 * 109.47063 * 215.09350 * 13 12 2 32 32 H 1.09002 * 109.46646 * 335.09181 * 13 12 2 33 33 H 1.08999 * 109.48696 * 296.27629 * 18 16 14 34 34 H 1.09004 * 109.47903 * 56.32283 * 18 16 14 35 35 H 1.08994 * 109.68833 * 295.02039 * 19 18 16 36 36 H 1.09000 * 109.77484 * 174.50821 * 19 18 16 37 37 H 1.09002 * 109.62557 * 291.63400 * 22 20 19 38 38 H 1.08996 * 109.78792 * 171.15981 * 22 20 19 39 39 H 1.09000 * 109.47377 * 56.93132 * 25 23 16 40 40 H 1.09000 * 109.47513 * 176.92781 * 25 23 16 41 41 H 1.08999 * 109.46924 * 296.92892 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4121 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7581 -3.7125 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0934 1.4278 14 6 2.7933 -0.0358 2.0833 15 8 3.1611 1.0957 1.8479 16 6 3.2027 -0.7095 3.3675 17 1 3.1923 -1.7907 3.2290 18 6 2.2203 -0.3296 4.4766 19 6 2.5813 -1.0882 5.7582 20 6 4.0308 -0.8088 6.0887 21 8 4.3534 -0.4318 7.1897 22 6 5.0659 -1.0141 5.0049 23 6 4.6138 -0.2597 3.7502 24 1 4.6118 0.8117 3.9509 25 6 5.5754 -0.5615 2.5991 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7081 1.1610 -3.4843 30 1 2.4602 -2.7359 1.0510 31 1 1.5353 -2.2637 2.4966 32 1 0.7345 -2.3240 0.9081 33 1 2.2763 0.7434 4.6600 34 1 1.2078 -0.5943 4.1717 35 1 2.4407 -2.1579 5.6037 36 1 1.9472 -0.7502 6.5779 37 1 5.1553 -2.0771 4.7807 38 1 6.0295 -0.6279 5.3371 39 1 5.2227 -0.0695 1.6926 40 1 6.5696 -0.1917 2.8497 41 1 5.6189 -1.6381 2.4348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343805344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:11 Heat of formation + Delta-G solvation = -111.212833 kcal Electronic energy + Delta-G solvation = -21500.964405 eV Core-core repulsion = 18379.438175 eV Total energy + Delta-G solvation = -3121.526230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61515 -40.27701 -37.75138 -36.84020 -34.77047 -33.52391 -31.68121 -29.96728 -27.91146 -27.51752 -27.22714 -24.26797 -23.12738 -21.77666 -20.29392 -19.68495 -18.48950 -17.86564 -17.22807 -16.67360 -16.58540 -16.25819 -15.98495 -15.67212 -15.06597 -14.90123 -14.37651 -14.30023 -14.00703 -13.55212 -13.35457 -13.27376 -13.18800 -12.96145 -12.91723 -12.79342 -12.69828 -12.56048 -12.49123 -12.16240 -12.11963 -11.92466 -11.77929 -11.48999 -11.13737 -10.56256 -10.40026 -10.33929 -9.25312 -8.12307 -6.28565 0.95266 1.41716 1.43648 1.53004 1.86006 2.34331 2.53103 3.15647 3.15714 3.53544 3.67464 3.70897 3.97041 4.20232 4.27316 4.34788 4.38959 4.51797 4.55497 4.66811 4.72260 4.75937 4.83820 4.88424 4.90872 4.91991 5.03679 5.08293 5.12636 5.13361 5.24788 5.31737 5.37742 5.50064 5.67954 5.72374 6.07956 6.20107 6.50582 6.80364 6.92194 7.36916 7.56363 8.91623 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.004944 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.483247 B = 5662.381806 C = 5984.951195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.601 5.601 13 C 0.078 3.922 14 C 0.504 3.496 15 O -0.605 6.605 16 C -0.100 4.100 17 H 0.130 0.870 18 C -0.098 4.098 19 C -0.155 4.155 20 C 0.365 3.635 21 O -0.502 6.502 22 C -0.154 4.154 23 C -0.063 4.063 24 H 0.055 0.945 25 C -0.147 4.147 26 H 0.050 0.950 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -10.777 13.645 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.293 3.707 15 O -0.487 6.487 16 C -0.121 4.121 17 H 0.148 0.852 18 C -0.136 4.136 19 C -0.193 4.193 20 C 0.244 3.756 21 O -0.379 6.379 22 C -0.192 4.192 23 C -0.082 4.082 24 H 0.074 0.926 25 C -0.205 4.205 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.153 0.847 38 H 0.110 0.890 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.123 -9.903 13.936 17.379 hybrid contribution 0.170 0.423 -1.448 1.518 sum 3.294 -9.480 12.487 16.021 Atomic orbital electron populations 1.21881 0.97173 1.00199 0.99869 1.18492 0.91513 0.92080 0.82082 0.97745 1.21583 1.31601 1.12870 0.91160 0.92126 1.25725 0.95181 0.95622 1.02022 1.70024 1.37528 1.23994 1.24283 0.85493 0.78888 0.78253 0.78603 1.19225 1.21451 1.19531 1.48251 1.49136 1.13380 1.22294 1.21893 1.01536 0.80310 1.02654 1.21208 0.77528 0.85999 0.85943 1.90625 1.56996 1.22002 1.79076 1.21553 0.96277 1.03043 0.91223 0.85213 1.21375 0.99503 1.00259 0.92444 1.22300 0.93657 1.04909 0.98402 1.25358 0.93724 0.69589 0.86960 1.90401 1.84935 1.36011 1.26514 1.22371 0.98772 1.04740 0.93277 1.20826 0.93114 0.99676 0.94616 0.92628 1.21835 0.99157 1.02561 0.96900 0.93142 0.96025 0.91719 0.92789 0.92447 0.88191 0.91164 0.93007 0.88839 0.84230 0.88481 0.84679 0.89016 0.95444 0.91365 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.96 71.98 0.64 -5.57 16 2 C 0.26 13.24 2.63 44.25 0.12 13.36 16 3 H 0.00 0.28 6.91 -2.39 -0.02 0.27 16 4 C -0.53 -28.46 8.37 25.60 0.21 -28.25 16 5 H 0.06 3.13 7.65 -2.91 -0.02 3.10 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.56 16 8 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.60 -23.70 2.75 -826.78 -2.28 -25.98 16 13 C 0.08 2.15 9.03 127.77 1.15 3.30 16 14 C 0.50 19.26 5.55 87.66 0.49 19.75 16 15 O -0.60 -29.87 14.86 -3.05 -0.05 -29.91 16 16 C -0.10 -2.42 1.25 -11.57 -0.01 -2.43 16 17 H 0.13 2.21 6.26 -2.39 -0.01 2.19 16 18 C -0.10 -1.99 5.15 30.66 0.16 -1.84 16 19 C -0.16 -2.26 6.17 30.11 0.19 -2.08 16 20 C 0.36 7.28 6.72 29.46 0.20 7.47 16 21 O -0.50 -13.92 17.89 -1.45 -0.03 -13.95 16 22 C -0.15 -2.62 5.45 30.11 0.16 -2.46 16 23 C -0.06 -1.52 1.94 -10.73 -0.02 -1.54 16 24 H 0.06 1.66 7.97 -2.39 -0.02 1.64 16 25 C -0.15 -3.78 8.93 71.98 0.64 -3.14 16 26 H 0.05 2.11 6.66 -2.39 -0.02 2.09 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.77 6.43 -2.39 -0.02 1.76 16 32 H 0.07 2.03 6.44 -2.39 -0.02 2.01 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.72 8.09 -2.38 -0.02 1.70 16 35 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 0.96 6.43 -2.39 -0.02 0.94 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.11 323.63 5.31 -68.80 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.01 Total: 11.20 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.38 Total: -2.22 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.03 Total: -78.54 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.07 Total: -43.86 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.11 5.31 -68.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343805344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.409 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds