Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46589 * 2 1 4 4 C 1.46502 * 120.00355 * 270.00250 * 3 2 1 5 5 C 1.50706 * 109.46779 * 270.00158 * 4 3 2 6 6 H 1.07992 * 120.00579 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99388 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00076 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99578 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47200 * 90.00017 * 9 7 5 11 11 H 1.48499 * 109.47317 * 209.99794 * 9 7 5 12 12 H 1.48508 * 109.47218 * 330.00032 * 9 7 5 13 13 C 1.34775 * 120.00189 * 90.00066 * 3 2 1 14 14 O 1.21281 * 120.00201 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99900 * 0.02562 * 13 3 2 16 16 C 1.52996 * 109.47504 * 179.97438 * 15 13 3 17 17 H 1.09007 * 110.62334 * 303.61930 * 16 15 13 18 18 C 1.54987 * 110.56939 * 66.45139 * 16 15 13 19 19 C 1.54886 * 102.33452 * 155.65372 * 18 16 15 20 20 C 1.51844 * 104.43359 * 322.37855 * 19 18 16 21 21 O 1.20761 * 126.34292 * 203.76120 * 20 19 18 22 22 C 1.51448 * 107.31915 * 23.78884 * 20 19 18 23 23 H 1.08994 * 109.99099 * 118.99275 * 22 20 19 24 24 C 1.53005 * 109.98561 * 240.29862 * 22 20 19 25 25 H 1.08998 * 109.47280 * 299.99403 * 1 2 3 26 26 H 1.08994 * 109.47363 * 60.00262 * 1 2 3 27 27 H 1.09006 * 109.46395 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47280 * 240.00597 * 2 1 3 29 29 H 1.08994 * 109.47363 * 119.99738 * 2 1 3 30 30 H 1.09000 * 109.46890 * 29.99655 * 4 3 2 31 31 H 1.08998 * 109.47440 * 150.00195 * 4 3 2 32 32 H 0.97005 * 119.99660 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46745 * 59.99567 * 15 13 3 34 34 H 1.08997 * 109.46887 * 300.00237 * 15 13 3 35 35 H 1.09005 * 110.83303 * 273.86462 * 18 16 15 36 36 H 1.08998 * 110.82874 * 37.44422 * 18 16 15 37 37 H 1.08998 * 110.44262 * 81.10795 * 19 18 16 38 38 H 1.08997 * 110.44595 * 203.51616 * 19 18 16 39 39 H 1.08997 * 109.47134 * 177.41333 * 24 22 20 40 40 H 1.08999 * 109.47029 * 297.41315 * 24 22 20 41 41 H 1.09000 * 109.46888 * 57.41285 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7037 6 1 4.3428 1.2312 -1.0959 7 6 4.1488 2.3900 -2.8780 8 7 3.3484 3.1253 -3.6185 9 14 5.9128 2.0961 -3.4176 10 1 5.9757 0.8749 -4.2604 11 1 6.3919 3.2632 -4.2009 12 1 6.7733 1.9163 -2.2207 13 6 2.2428 2.0166 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2432 3.6352 17 1 3.3512 2.6001 3.5597 18 6 1.3346 3.4355 3.6731 19 6 1.3933 3.8672 5.1594 20 6 1.5063 2.5626 5.9282 21 8 1.1866 2.3797 7.0782 22 6 2.0949 1.5335 4.9858 23 1 3.0428 1.1667 5.3795 24 6 1.1177 0.3699 4.8058 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0278 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5815 1.6878 -2.0283 31 1 2.0953 3.1412 -1.1383 32 1 3.6742 3.5152 -4.4448 33 1 2.6229 0.4188 2.5298 34 1 0.9445 1.0113 2.5302 35 1 1.6735 4.2412 3.0217 36 1 0.3291 3.1135 3.4023 37 1 2.2678 4.4923 5.3400 38 1 0.4829 4.3978 5.4380 39 1 1.5293 -0.3429 4.0913 40 1 0.9619 -0.1252 5.7643 41 1 0.1660 0.7490 4.4337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355048018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = -112.811134 kcal Electronic energy + Delta-G solvation = -21067.297918 eV Core-core repulsion = 17945.702381 eV Total energy + Delta-G solvation = -3121.595538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40647 -40.33893 -37.85154 -36.75918 -34.88722 -32.63193 -31.70310 -31.08479 -28.93285 -26.33110 -25.84549 -24.62964 -23.88945 -21.41435 -19.97244 -19.39774 -18.57989 -18.00733 -17.27140 -17.11862 -16.50701 -16.26237 -15.91910 -15.75123 -14.85224 -14.66545 -14.54670 -14.24870 -14.13724 -13.81006 -13.50581 -13.40014 -13.23163 -13.14635 -12.89683 -12.82274 -12.64059 -12.45944 -12.29036 -12.10063 -11.94602 -11.70638 -11.69199 -11.55686 -11.33938 -10.61969 -10.45440 -10.29681 -9.33643 -8.19791 -6.34509 0.90923 1.37477 1.40178 1.50339 1.98522 2.35194 2.51741 3.09565 3.14109 3.46978 3.67029 3.83995 4.03924 4.19562 4.22520 4.29197 4.35978 4.47282 4.53349 4.59926 4.63882 4.71667 4.81766 4.89200 4.93957 5.02671 5.05256 5.08157 5.10842 5.13599 5.26537 5.28061 5.39730 5.43289 5.46475 5.62727 5.93065 6.10859 6.47942 6.74569 6.92721 7.32534 7.62180 8.86804 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.004626 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.178215 B = 6051.273929 C = 6484.970599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.493 3.507 14 O -0.592 6.592 15 C -0.120 4.120 16 C -0.066 4.066 17 H 0.074 0.926 18 C -0.111 4.111 19 C -0.179 4.179 20 C 0.380 3.620 21 O -0.483 6.483 22 C -0.141 4.141 23 H 0.115 0.885 24 C -0.142 4.142 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.016 0.984 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -8.193 14.812 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.283 3.717 14 O -0.473 6.473 15 C -0.159 4.159 16 C -0.085 4.085 17 H 0.093 0.907 18 C -0.148 4.148 19 C -0.217 4.217 20 C 0.258 3.742 21 O -0.358 6.358 22 C -0.160 4.160 23 H 0.132 0.868 24 C -0.199 4.199 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.034 0.966 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.575 -7.622 15.230 17.920 hybrid contribution 0.934 0.529 -1.007 1.472 sum -4.641 -7.093 14.223 16.557 Atomic orbital electron populations 1.22161 0.94785 1.03392 1.01647 1.21731 0.95151 0.81527 1.03879 1.48304 1.64147 1.15038 1.06333 1.18639 0.94981 0.91516 0.80784 1.21738 0.97989 1.31724 1.06377 0.92813 1.25847 1.02241 0.94554 0.96536 1.70057 1.37750 1.34421 1.14765 0.85442 0.79215 0.78087 0.78222 1.18938 1.20837 1.19666 1.21462 0.76970 0.86667 0.86615 1.90622 1.47902 1.20642 1.88112 1.21909 1.05520 0.99487 0.89018 1.21609 1.00345 0.94727 0.91799 0.90721 1.22442 0.99571 0.98484 0.94332 1.22930 1.05269 0.97467 0.96006 1.25265 0.70544 0.92152 0.86266 1.90386 1.41701 1.84554 1.19160 1.22263 1.02108 0.96847 0.94750 0.86762 1.21824 0.98481 0.96375 1.03203 0.91766 0.94723 0.88785 0.91541 0.87705 0.96564 0.98611 0.92527 0.86582 0.86234 0.91659 0.90604 0.87040 0.88299 0.89012 0.92087 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.61 -24.25 2.46 -826.15 -2.03 -26.28 16 4 C 0.26 13.93 5.16 85.63 0.44 14.37 16 5 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.49 18.63 7.46 87.66 0.65 19.28 16 14 O -0.59 -28.28 14.12 -3.03 -0.04 -28.32 16 15 C -0.12 -2.76 2.45 29.85 0.07 -2.69 16 16 C -0.07 -1.47 2.42 -9.68 -0.02 -1.50 16 17 H 0.07 1.95 8.03 -2.38 -0.02 1.93 16 18 C -0.11 -2.61 5.65 31.92 0.18 -2.43 16 19 C -0.18 -3.54 6.72 30.86 0.21 -3.33 16 20 C 0.38 8.12 7.18 29.71 0.21 8.34 16 21 O -0.48 -13.24 17.99 -1.45 -0.03 -13.27 16 22 C -0.14 -2.47 3.36 -10.87 -0.04 -2.51 16 23 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 24 C -0.14 -1.97 7.95 71.98 0.57 -1.39 16 25 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 30 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 32 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 33 H 0.12 2.11 6.85 -2.39 -0.02 2.09 16 34 H 0.12 2.11 5.71 -2.39 -0.01 2.09 16 35 H 0.06 1.97 7.12 -2.38 -0.02 1.95 16 36 H 0.08 1.64 8.02 -2.39 -0.02 1.62 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 0.94 6.63 -2.39 -0.02 0.93 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.86 7.64 -2.39 -0.02 0.84 16 Total: -1.00 -74.70 330.27 5.45 -69.25 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.00 Total: 9.01 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.23 Total: -1.09 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.74 Total: -82.16 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.07 Total: -41.59 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.70 5.45 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355048018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.558 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds