Wall clock time and date at job start Mon Mar 30 2020 00:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47276 * 2 1 4 4 C 1.50700 * 109.46952 * 119.99424 * 2 1 3 5 5 H 1.08001 * 120.00066 * 120.00222 * 4 2 1 6 6 C 1.37876 * 120.00284 * 300.00189 * 4 2 1 7 7 N 1.31514 * 120.00039 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00290 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47000 * 60.00064 * 8 6 4 10 10 H 1.48500 * 109.47195 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47027 * 300.00373 * 8 6 4 12 12 N 1.46491 * 109.47588 * 239.99786 * 2 1 3 13 13 C 1.46503 * 119.99819 * 300.00125 * 12 2 1 14 14 C 1.34775 * 120.00173 * 119.99999 * 12 2 1 15 15 O 1.21275 * 120.00202 * 359.97438 * 14 12 2 16 16 C 1.50705 * 120.00213 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47317 * 179.97438 * 16 14 12 18 18 H 1.09001 * 110.50554 * 56.30361 * 17 16 14 19 19 C 1.54981 * 110.57254 * 293.55000 * 17 16 14 20 20 C 1.54888 * 102.33479 * 204.34704 * 19 17 16 21 21 C 1.51841 * 104.54091 * 37.56384 * 20 19 17 22 22 O 1.20759 * 126.34263 * 156.25340 * 21 20 19 23 23 C 1.51643 * 107.22027 * 336.35467 * 21 20 19 24 24 H 1.09006 * 110.05394 * 119.59263 * 23 21 20 25 25 C 1.53001 * 109.92453 * 240.86807 * 23 21 20 26 26 H 1.09004 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47661 * 300.00025 * 1 2 3 28 28 H 1.08999 * 109.47103 * 60.00284 * 1 2 3 29 29 H 0.96995 * 120.00296 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46968 * 269.99508 * 13 12 2 31 31 H 1.08995 * 109.47466 * 30.00048 * 13 12 2 32 32 H 1.09005 * 109.47108 * 150.00298 * 13 12 2 33 33 H 1.09005 * 109.46932 * 60.00119 * 16 14 12 34 34 H 1.08999 * 109.46922 * 300.00680 * 16 14 12 35 35 H 1.09005 * 110.83209 * 86.13455 * 19 17 16 36 36 H 1.09003 * 111.00202 * 322.63967 * 19 17 16 37 37 H 1.09002 * 110.44275 * 156.36322 * 20 19 17 38 38 H 1.09001 * 110.44239 * 278.76143 * 20 19 17 39 39 H 1.08995 * 109.46758 * 177.40514 * 25 23 21 40 40 H 1.09000 * 109.47031 * 297.40536 * 25 23 21 41 41 H 1.09000 * 109.47028 * 57.40773 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.8062 -1.1206 4.0084 10 1 1.8257 -0.4202 5.2206 11 1 1.8257 -2.5200 4.0079 12 7 2.0184 -0.6906 -1.1960 13 6 1.6645 -2.0932 -1.4278 14 6 2.7933 -0.0356 -2.0832 15 8 3.0858 1.1256 -1.8916 16 6 3.2962 -0.7463 -3.3133 17 6 4.1456 0.2156 -4.1465 18 1 4.9619 0.6203 -3.5483 19 6 3.2702 1.3597 -4.7181 20 6 4.0797 1.8063 -5.9609 21 6 4.6399 0.5169 -6.5345 22 8 4.9796 0.3306 -7.6783 23 6 4.6904 -0.4927 -5.4042 24 1 4.0684 -1.3549 -5.6449 25 6 6.1346 -0.9396 -5.1684 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7080 1.1610 3.4843 30 1 2.4158 -2.7377 -0.9715 31 1 0.6905 -2.3003 -0.9846 32 1 1.6240 -2.2853 -2.5000 33 1 2.4487 -1.0892 -3.9068 34 1 3.9019 -1.6024 -3.0162 35 1 3.1808 2.1750 -4.0002 36 1 2.2863 0.9911 -5.0082 37 1 3.4270 2.2934 -6.6854 38 1 4.8885 2.4757 -5.6680 39 1 6.1684 -1.6294 -4.3252 40 1 6.5109 -1.4386 -6.0614 41 1 6.7533 -0.0690 -4.9506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355671738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:28 Heat of formation + Delta-G solvation = -91.300434 kcal Electronic energy + Delta-G solvation = -20937.326512 eV Core-core repulsion = 17816.663748 eV Total energy + Delta-G solvation = -3120.662764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24026 -38.99699 -36.71420 -35.22256 -32.91084 -31.59838 -30.82099 -29.04498 -26.15234 -25.25973 -24.90383 -24.63512 -21.46465 -20.25247 -19.17416 -18.21656 -16.70740 -16.19455 -16.12632 -15.74635 -15.10147 -14.93590 -14.48126 -14.25430 -13.91006 -13.57659 -13.19489 -12.80280 -12.64778 -12.49356 -12.28805 -12.18698 -11.82182 -11.61354 -11.53692 -11.26904 -11.07933 -10.98248 -10.83430 -10.69679 -10.63233 -10.55529 -10.27042 -10.17037 -9.50042 -9.18263 -8.86127 -8.43130 -7.58442 -6.08250 -4.16355 1.81868 3.26555 3.31886 3.32598 3.41090 3.89172 4.02164 4.36917 4.44370 4.63793 4.77539 5.05523 5.12390 5.21774 5.23723 5.27984 5.37338 5.43103 5.49665 5.64468 5.72303 5.74758 5.87990 5.89771 5.93445 6.02169 6.07040 6.28122 6.31813 6.41564 6.74843 6.80777 7.04782 7.38186 7.42989 7.51703 7.70860 8.00575 8.19214 8.54132 8.82669 9.06734 9.50421 10.96917 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.004164 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.284210 B = 6723.182712 C = 6929.398160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.087 3.913 14 C 0.503 3.497 15 O -0.552 6.552 16 C -0.133 4.133 17 C -0.066 4.066 18 H 0.093 0.907 19 C -0.112 4.112 20 C -0.184 4.184 21 C 0.375 3.625 22 O -0.453 6.453 23 C -0.152 4.152 24 H 0.103 0.897 25 C -0.137 4.137 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -3.985 -13.360 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.058 4.058 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.173 4.173 17 C -0.085 4.085 18 H 0.111 0.889 19 C -0.150 4.150 20 C -0.222 4.222 21 C 0.250 3.750 22 O -0.326 6.326 23 C -0.171 4.171 24 H 0.120 0.880 25 C -0.195 4.195 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.222 -3.360 -13.690 14.715 hybrid contribution 0.172 -0.699 1.058 1.279 sum 4.394 -4.058 -12.632 13.977 Atomic orbital electron populations 1.22095 0.98359 0.99294 1.00807 1.18914 0.90768 0.94530 0.80052 0.91870 1.21285 1.31834 1.12954 0.90362 0.92421 1.24889 0.94957 0.94973 0.98942 1.69864 1.36308 1.22622 1.23848 0.86566 0.79233 0.79583 0.82058 1.20264 1.21173 1.20262 1.48248 1.49076 1.11605 1.23681 1.21551 1.01581 0.83342 0.99278 1.20341 0.79159 0.87190 0.84316 1.90621 1.58406 1.17089 1.76962 1.21760 1.00393 0.99327 0.95860 1.21722 0.98451 0.94756 0.93603 0.88899 1.22526 0.97352 0.99525 0.95550 1.22953 1.01854 0.97654 0.99711 1.25125 0.71101 0.91072 0.87686 1.90386 1.38921 1.82789 1.20495 1.22426 0.99416 0.99493 0.95753 0.87951 1.21677 0.93646 1.01808 1.02336 0.95175 0.88852 0.97016 0.92644 0.93376 0.90965 0.92968 0.89495 0.89307 0.88616 0.91293 0.89289 0.87818 0.91269 0.92191 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.26 6.40 2.64 -69.09 -0.18 6.22 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.96 8.37 -34.44 -0.29 -14.25 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.03 2.75 -175.27 -0.48 -12.51 16 13 C 0.09 1.37 9.48 59.85 0.57 1.94 16 14 C 0.50 9.49 7.46 -10.98 -0.08 9.40 16 15 O -0.55 -12.35 13.87 5.56 0.08 -12.28 16 16 C -0.13 -1.72 3.62 -27.88 -0.10 -1.82 16 17 C -0.07 -0.79 2.03 -88.91 -0.18 -0.97 16 18 H 0.09 1.22 7.74 -51.93 -0.40 0.82 16 19 C -0.11 -1.33 5.65 -24.69 -0.14 -1.47 16 20 C -0.18 -1.89 6.71 -26.32 -0.18 -2.07 16 21 C 0.37 4.33 7.19 -28.01 -0.20 4.13 16 22 O -0.45 -6.55 17.99 6.00 0.11 -6.44 16 23 C -0.15 -1.54 3.02 -90.64 -0.27 -1.81 16 24 H 0.10 0.94 7.83 -51.93 -0.41 0.53 16 25 C -0.14 -1.28 9.08 37.16 0.34 -0.95 16 26 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.18 6.43 -51.93 -0.33 0.84 16 32 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 33 H 0.09 0.95 7.36 -51.93 -0.38 0.57 16 34 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.10 1.35 7.12 -51.93 -0.37 0.98 16 36 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -30.90 327.92 -6.81 -37.71 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.58 Total: 0.12 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.48 Total: -3.11 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.14 Total: -36.71 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.19 Total: -18.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.90 -6.81 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355671738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.587 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds