Wall clock time and date at job start Mon Mar 30 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 120.00042 * 2 1 4 4 N 1.46498 * 109.47330 * 125.32306 * 3 2 1 5 5 C 1.46502 * 119.99786 * 89.17718 * 4 3 2 6 6 C 1.50690 * 109.47494 * 83.64095 * 5 4 3 7 7 H 1.08008 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00616 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99431 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00396 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47094 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47109 * 119.99926 * 10 8 6 13 13 H 1.48494 * 109.47155 * 240.00134 * 10 8 6 14 14 C 1.34776 * 120.00377 * 269.18122 * 4 3 2 15 15 O 1.21282 * 119.99985 * 4.60091 * 14 4 3 16 16 C 1.50701 * 120.00107 * 184.61192 * 14 4 3 17 17 H 1.09003 * 109.86905 * 311.80547 * 16 14 4 18 18 O 1.43743 * 109.87564 * 190.80520 * 16 14 4 19 19 C 1.44576 * 106.87007 * 214.16989 * 18 16 14 20 20 H 1.09006 * 110.63788 * 281.31597 * 19 18 16 21 21 C 1.52996 * 110.64457 * 158.44647 * 19 18 16 22 22 C 1.54992 * 103.58579 * 39.87891 * 19 18 16 23 23 C 1.54099 * 109.88247 * 72.81828 * 16 14 4 24 24 H 1.09001 * 110.48646 * 2.64622 * 23 16 14 25 25 C 1.53002 * 110.48594 * 240.13251 * 23 16 14 26 26 H 1.07997 * 120.00186 * 185.43063 * 1 2 3 27 27 H 1.08001 * 119.99920 * 5.42546 * 1 2 3 28 28 H 1.08001 * 119.99722 * 180.27838 * 2 1 3 29 29 H 1.09001 * 109.47518 * 245.32472 * 3 2 1 30 30 H 1.09003 * 109.47558 * 5.32579 * 3 2 1 31 31 H 1.09005 * 109.46741 * 203.64026 * 5 4 3 32 32 H 1.08994 * 109.47039 * 323.63510 * 5 4 3 33 33 H 0.97005 * 119.99985 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46866 * 305.80387 * 21 19 18 35 35 H 1.08999 * 109.47437 * 65.79769 * 21 19 18 36 36 H 1.09002 * 109.47559 * 185.80057 * 21 19 18 37 37 H 1.09005 * 110.90879 * 204.85845 * 22 19 18 38 38 H 1.08998 * 110.91028 * 81.25942 * 22 19 18 39 39 H 1.08998 * 109.47211 * 52.29384 * 25 23 16 40 40 H 1.08999 * 109.46603 * 172.30181 * 25 23 16 41 41 H 1.09005 * 109.46738 * 292.29309 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9993 1.3287 1.1269 5 6 4.3580 0.8063 0.9618 6 6 5.2364 1.8724 0.3594 7 1 4.8239 2.8423 0.1235 8 6 6.5669 1.6101 0.1103 9 7 7.0693 0.4292 0.3980 10 14 7.6554 2.9314 -0.6370 11 1 6.8551 4.1611 -0.8658 12 1 8.7739 3.2350 0.2916 13 1 8.2029 2.4487 -1.9302 14 6 2.6103 1.8309 2.3156 15 8 1.4620 2.1862 2.4772 16 6 3.6021 1.9512 3.4438 17 1 4.1494 1.0154 3.5573 18 8 2.9156 2.2672 4.6664 19 6 3.7939 3.1237 5.4315 20 1 4.5691 2.5370 5.9244 21 6 2.9986 3.9329 6.4579 22 6 4.4139 4.0582 4.3616 23 6 4.5858 3.1020 3.1563 24 1 4.3222 3.6059 2.2264 25 6 6.0210 2.5758 3.0905 26 1 -0.5400 -0.9311 0.0885 27 1 -0.5400 0.9311 -0.0884 28 1 1.8500 -0.9353 -0.0045 29 1 2.6168 1.4052 -0.9338 30 1 1.3591 2.1314 0.0954 31 1 4.7556 0.5144 1.9339 32 1 4.3360 -0.0615 0.3028 33 1 8.0054 0.2447 0.2231 34 1 2.1970 4.4722 5.9532 35 1 2.5715 3.2586 7.2002 36 1 3.6606 4.6444 6.9516 37 1 5.3782 4.4433 4.6933 38 1 3.7341 4.8743 4.1169 39 1 6.0702 1.7410 2.3914 40 1 6.6847 3.3720 2.7532 41 1 6.3305 2.2397 4.0802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359417170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:21 Heat of formation + Delta-G solvation = -63.996596 kcal Electronic energy + Delta-G solvation = -21948.416540 eV Core-core repulsion = 18828.937760 eV Total energy + Delta-G solvation = -3119.478780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04374 -38.09777 -35.44202 -33.92637 -32.60796 -32.24623 -31.63776 -27.60108 -27.17469 -26.12000 -24.60207 -22.97016 -21.20471 -20.35179 -19.54752 -18.51943 -16.64864 -16.45482 -15.93973 -15.76735 -14.84585 -14.61352 -14.36183 -14.10498 -13.57377 -13.29729 -12.95073 -12.83814 -12.47435 -12.27758 -12.27063 -12.11529 -11.62475 -11.42767 -11.29026 -11.09015 -10.98210 -10.80104 -10.72435 -10.64259 -10.27140 -10.04734 -9.90982 -9.73182 -9.47462 -9.10860 -8.69500 -8.48946 -7.76012 -6.25862 -4.30678 2.59226 3.15398 3.25737 3.28077 3.38092 3.71955 4.25312 4.48671 4.94070 5.04263 5.07289 5.28351 5.35173 5.41249 5.46807 5.57706 5.65212 5.69324 5.80498 5.96216 6.02024 6.12086 6.17175 6.20447 6.20781 6.33062 6.36731 6.40595 6.65831 6.68863 6.85652 6.96964 7.04132 7.15345 7.25279 7.46178 7.54247 7.69997 7.97750 8.30960 8.72795 9.02026 9.34402 10.79845 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.009685 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.931822 B = 2890.234850 C = 4670.399533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C 0.147 3.853 4 N -0.591 5.591 5 C 0.230 3.770 6 C -0.529 4.529 7 H 0.063 0.937 8 C 0.070 3.930 9 N -0.888 5.888 10 Si 0.886 3.114 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.516 3.484 15 O -0.554 6.554 16 C 0.071 3.929 17 H 0.091 0.909 18 O -0.354 6.354 19 C 0.070 3.930 20 H 0.068 0.932 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.094 4.094 24 H 0.090 0.910 25 C -0.155 4.155 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.047 0.953 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 3.029 5.044 6.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.178 4.178 3 C 0.024 3.976 4 N -0.322 5.322 5 C 0.110 3.890 6 C -0.568 4.568 7 H 0.081 0.919 8 C -0.133 4.133 9 N -0.527 5.527 10 Si 0.714 3.286 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.304 3.696 15 O -0.433 6.433 16 C 0.010 3.990 17 H 0.109 0.891 18 O -0.273 6.273 19 C 0.012 3.988 20 H 0.086 0.914 21 C -0.200 4.200 22 C -0.187 4.187 23 C -0.113 4.113 24 H 0.108 0.892 25 C -0.212 4.212 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.066 0.934 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.859 3.037 5.181 7.139 hybrid contribution 1.079 0.592 -0.582 1.361 sum -2.780 3.629 4.599 6.484 Atomic orbital electron populations 1.23709 0.95874 1.01348 1.01696 1.23391 0.96119 0.99428 0.98835 1.20341 0.92184 0.94741 0.90360 1.48110 1.14968 1.59888 1.09267 1.19637 0.75977 0.95000 0.98336 1.21430 0.94061 0.99325 1.41972 0.91877 1.24854 0.97777 0.95467 0.95221 1.69927 1.14540 1.20763 1.47421 0.86611 0.80705 0.82127 0.79173 1.19581 1.20699 1.20889 1.20331 0.88193 0.77372 0.83741 1.90600 1.19698 1.50511 1.82472 1.22689 0.91775 0.99968 0.84532 0.89130 1.88958 1.41048 1.68312 1.28988 1.23132 0.92039 0.90815 0.92794 0.91417 1.21743 1.00549 0.99560 0.98169 1.23305 1.01270 0.98497 0.95597 1.22229 0.96258 0.93960 0.98831 0.89152 1.22243 0.92871 1.04298 1.01747 0.89010 0.88774 0.87538 0.89464 0.90721 0.94069 0.94585 0.92453 0.91770 0.92184 0.91451 0.90320 0.90943 0.86134 0.93360 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 14.31 29.01 0.42 -2.48 16 2 C -0.16 -2.71 9.85 -36.03 -0.35 -3.06 16 3 C 0.15 2.77 5.83 -5.20 -0.03 2.74 16 4 N -0.59 -12.44 2.44 -176.44 -0.43 -12.88 16 5 C 0.23 5.16 4.61 -5.20 -0.02 5.13 16 6 C -0.53 -12.48 6.11 -34.44 -0.21 -12.69 16 7 H 0.06 1.54 7.55 -52.48 -0.40 1.14 16 8 C 0.07 1.69 4.17 -17.82 -0.07 1.61 16 9 N -0.89 -22.51 13.13 55.43 0.73 -21.78 16 10 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.52 11.40 6.76 -10.99 -0.07 11.33 16 15 O -0.55 -13.55 16.17 -13.79 -0.22 -13.77 16 16 C 0.07 1.42 2.71 -27.31 -0.07 1.35 16 17 H 0.09 1.82 6.18 -51.93 -0.32 1.49 16 18 O -0.35 -7.02 10.48 -54.57 -0.57 -7.59 16 19 C 0.07 1.08 3.97 -25.68 -0.10 0.98 16 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.14 -1.81 9.66 37.16 0.36 -1.46 16 22 C -0.15 -2.30 6.13 -24.72 -0.15 -2.45 16 23 C -0.09 -1.73 2.33 -89.09 -0.21 -1.94 16 24 H 0.09 1.84 6.93 -51.93 -0.36 1.48 16 25 C -0.15 -2.91 7.93 37.16 0.29 -2.61 16 26 H 0.09 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.09 1.41 7.86 -52.49 -0.41 1.00 16 28 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.09 1.59 8.08 -51.93 -0.42 1.17 16 30 H 0.07 1.43 7.13 -51.93 -0.37 1.06 16 31 H 0.04 0.95 4.58 -51.93 -0.24 0.72 16 32 H 0.04 0.86 8.12 -51.93 -0.42 0.43 16 33 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 38 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 39 H 0.12 2.61 3.08 -51.93 -0.16 2.45 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -27.41 326.12 -7.28 -34.69 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.44 Total: 5.65 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.24 Total: -3.55 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.30 Total: -34.66 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.79 Total: -21.36 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.41 -7.28 -34.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359417170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.307 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds