Wall clock time and date at job start Mon Mar 30 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 120.00042 * 2 1 4 4 N 1.46498 * 109.47330 * 125.32306 * 3 2 1 5 5 C 1.46502 * 119.99786 * 89.17718 * 4 3 2 6 6 C 1.50690 * 109.47494 * 83.64095 * 5 4 3 7 7 H 1.08008 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00616 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99431 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00396 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47094 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47109 * 119.99926 * 10 8 6 13 13 H 1.48494 * 109.47155 * 240.00134 * 10 8 6 14 14 C 1.34776 * 120.00377 * 269.18122 * 4 3 2 15 15 O 1.21282 * 119.99985 * 4.60091 * 14 4 3 16 16 C 1.50701 * 120.00107 * 184.61192 * 14 4 3 17 17 H 1.09003 * 109.86905 * 311.80547 * 16 14 4 18 18 O 1.43743 * 109.87564 * 190.80520 * 16 14 4 19 19 C 1.44576 * 106.87007 * 214.16989 * 18 16 14 20 20 H 1.09006 * 110.63788 * 281.31597 * 19 18 16 21 21 C 1.52996 * 110.64457 * 158.44647 * 19 18 16 22 22 C 1.54992 * 103.58579 * 39.87891 * 19 18 16 23 23 C 1.54099 * 109.88247 * 72.81828 * 16 14 4 24 24 H 1.09001 * 110.48646 * 2.64622 * 23 16 14 25 25 C 1.53002 * 110.48594 * 240.13251 * 23 16 14 26 26 H 1.07997 * 120.00186 * 185.43063 * 1 2 3 27 27 H 1.08001 * 119.99920 * 5.42546 * 1 2 3 28 28 H 1.08001 * 119.99722 * 180.27838 * 2 1 3 29 29 H 1.09001 * 109.47518 * 245.32472 * 3 2 1 30 30 H 1.09003 * 109.47558 * 5.32579 * 3 2 1 31 31 H 1.09005 * 109.46741 * 203.64026 * 5 4 3 32 32 H 1.08994 * 109.47039 * 323.63510 * 5 4 3 33 33 H 0.97005 * 119.99985 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46866 * 305.80387 * 21 19 18 35 35 H 1.08999 * 109.47437 * 65.79769 * 21 19 18 36 36 H 1.09002 * 109.47559 * 185.80057 * 21 19 18 37 37 H 1.09005 * 110.90879 * 204.85845 * 22 19 18 38 38 H 1.08998 * 110.91028 * 81.25942 * 22 19 18 39 39 H 1.08998 * 109.47211 * 52.29384 * 25 23 16 40 40 H 1.08999 * 109.46603 * 172.30181 * 25 23 16 41 41 H 1.09005 * 109.46738 * 292.29309 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9993 1.3287 1.1269 5 6 4.3580 0.8063 0.9618 6 6 5.2364 1.8724 0.3594 7 1 4.8239 2.8423 0.1235 8 6 6.5669 1.6101 0.1103 9 7 7.0693 0.4292 0.3980 10 14 7.6554 2.9314 -0.6370 11 1 6.8551 4.1611 -0.8658 12 1 8.7739 3.2350 0.2916 13 1 8.2029 2.4487 -1.9302 14 6 2.6103 1.8309 2.3156 15 8 1.4620 2.1862 2.4772 16 6 3.6021 1.9512 3.4438 17 1 4.1494 1.0154 3.5573 18 8 2.9156 2.2672 4.6664 19 6 3.7939 3.1237 5.4315 20 1 4.5691 2.5370 5.9244 21 6 2.9986 3.9329 6.4579 22 6 4.4139 4.0582 4.3616 23 6 4.5858 3.1020 3.1563 24 1 4.3222 3.6059 2.2264 25 6 6.0210 2.5758 3.0905 26 1 -0.5400 -0.9311 0.0885 27 1 -0.5400 0.9311 -0.0884 28 1 1.8500 -0.9353 -0.0045 29 1 2.6168 1.4052 -0.9338 30 1 1.3591 2.1314 0.0954 31 1 4.7556 0.5144 1.9339 32 1 4.3360 -0.0615 0.3028 33 1 8.0054 0.2447 0.2231 34 1 2.1970 4.4722 5.9532 35 1 2.5715 3.2586 7.2002 36 1 3.6606 4.6444 6.9516 37 1 5.3782 4.4433 4.6933 38 1 3.7341 4.8743 4.1169 39 1 6.0702 1.7410 2.3914 40 1 6.6847 3.3720 2.7532 41 1 6.3305 2.2397 4.0802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359417170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:20 Heat of formation + Delta-G solvation = -78.046633 kcal Electronic energy + Delta-G solvation = -21949.025796 eV Core-core repulsion = 18828.937760 eV Total energy + Delta-G solvation = -3120.088036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60880 -39.65183 -37.17327 -35.47740 -34.18863 -33.88204 -32.87957 -29.35938 -28.70227 -27.43688 -26.13236 -24.80395 -22.48340 -21.76729 -20.93750 -20.16019 -18.45423 -18.13627 -17.60163 -17.13847 -16.41206 -16.25459 -15.91370 -15.58378 -15.05592 -14.70431 -14.50935 -14.32848 -14.21525 -13.85086 -13.58823 -13.25505 -13.03522 -12.97909 -12.79727 -12.71929 -12.58791 -12.25936 -12.23677 -12.05315 -11.97266 -11.70441 -11.39638 -11.34870 -10.97851 -10.55281 -10.44844 -10.14535 -9.51023 -8.14331 -6.23359 1.24511 1.41020 1.47693 1.54382 1.66057 2.18879 2.44834 3.04451 3.17322 3.53049 3.68213 3.90048 3.94381 4.04576 4.18580 4.23851 4.29934 4.46248 4.54068 4.60205 4.73082 4.77876 4.82453 4.87647 4.90323 4.96127 5.01133 5.14304 5.19721 5.22624 5.29534 5.37379 5.64024 5.65806 5.77568 5.83320 5.89582 5.97880 6.11796 6.55061 6.84034 7.27215 7.45102 8.91456 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.009685 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.931822 B = 2890.234850 C = 4670.399533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.183 4.183 3 C 0.144 3.856 4 N -0.590 5.590 5 C 0.245 3.755 6 C -0.524 4.524 7 H 0.053 0.947 8 C 0.042 3.958 9 N -0.912 5.912 10 Si 0.934 3.066 11 H -0.272 1.272 12 H -0.275 1.275 13 H -0.285 1.285 14 C 0.510 3.490 15 O -0.583 6.583 16 C 0.074 3.926 17 H 0.087 0.913 18 O -0.379 6.379 19 C 0.061 3.939 20 H 0.083 0.917 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.090 4.090 24 H 0.066 0.934 25 C -0.149 4.149 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 3.825 5.962 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C 0.022 3.978 4 N -0.320 5.320 5 C 0.125 3.875 6 C -0.563 4.563 7 H 0.071 0.929 8 C -0.159 4.159 9 N -0.551 5.551 10 Si 0.760 3.240 11 H -0.197 1.197 12 H -0.201 1.201 13 H -0.211 1.211 14 C 0.298 3.702 15 O -0.464 6.464 16 C 0.014 3.986 17 H 0.104 0.896 18 O -0.298 6.298 19 C 0.005 3.995 20 H 0.101 0.899 21 C -0.195 4.195 22 C -0.178 4.178 23 C -0.109 4.109 24 H 0.084 0.916 25 C -0.206 4.206 26 H 0.135 0.865 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.559 3.834 6.090 8.029 hybrid contribution 0.923 0.329 -0.871 1.311 sum -2.636 4.163 5.220 7.178 Atomic orbital electron populations 1.23957 0.95240 1.02709 0.98538 1.23264 0.96788 0.98386 1.01742 1.20438 0.91935 0.95856 0.89614 1.48156 1.14835 1.59274 1.09777 1.19361 0.76484 0.94174 0.97473 1.21396 0.94289 0.98899 1.41668 0.92908 1.25296 0.98549 0.96665 0.95422 1.69995 1.14821 1.22025 1.48308 0.85875 0.79456 0.80233 0.78422 1.19669 1.20069 1.21141 1.20771 0.88248 0.76840 0.84360 1.90564 1.20865 1.51954 1.83037 1.22611 0.91350 1.00410 0.84275 0.89562 1.88941 1.42484 1.69364 1.29033 1.23490 0.92411 0.90712 0.92936 0.89868 1.21766 1.00570 0.99752 0.97441 1.23300 1.02775 0.97749 0.94004 1.22142 0.95602 0.93995 0.99194 0.91574 1.22117 0.93027 1.03271 1.02146 0.86469 0.88439 0.87440 0.89444 0.91211 0.94647 0.96151 0.92373 0.92933 0.91651 0.88283 0.87581 0.90895 0.88966 0.93109 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 14.31 67.78 0.97 -3.92 16 2 C -0.18 -6.20 9.85 25.64 0.25 -5.95 16 3 C 0.14 5.52 5.83 85.63 0.50 6.02 16 4 N -0.59 -25.37 2.44 -830.53 -2.03 -27.39 16 5 C 0.25 11.22 4.61 85.63 0.39 11.61 16 6 C -0.52 -24.92 6.11 25.60 0.16 -24.76 16 7 H 0.05 2.60 7.55 -2.91 -0.02 2.58 16 8 C 0.04 2.01 4.17 84.66 0.35 2.36 16 9 N -0.91 -46.23 13.13 21.45 0.28 -45.95 16 10 Si 0.93 39.18 29.54 68.60 2.03 41.20 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.51 22.86 6.76 87.66 0.59 23.46 16 15 O -0.58 -28.90 16.17 15.46 0.25 -28.65 16 16 C 0.07 2.98 2.71 30.22 0.08 3.06 16 17 H 0.09 3.50 6.18 -2.39 -0.01 3.48 16 18 O -0.38 -14.78 10.48 -130.48 -1.37 -16.15 16 19 C 0.06 1.76 3.97 31.27 0.12 1.89 16 20 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 21 C -0.14 -3.14 9.66 71.98 0.70 -2.45 16 22 C -0.14 -4.05 6.13 31.89 0.20 -3.85 16 23 C -0.09 -3.28 2.33 -9.80 -0.02 -3.30 16 24 H 0.07 2.71 6.93 -2.39 -0.02 2.70 16 25 C -0.15 -5.41 7.93 71.98 0.57 -4.84 16 26 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.10 2.79 7.86 -2.91 -0.02 2.77 16 28 H 0.11 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.09 3.27 8.08 -2.39 -0.02 3.25 16 30 H 0.07 2.71 7.13 -2.39 -0.02 2.70 16 31 H 0.04 1.68 4.58 -2.38 -0.01 1.67 16 32 H 0.02 0.99 8.12 -2.39 -0.02 0.98 16 33 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 2.47 7.86 -2.38 -0.02 2.45 16 38 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.09 3.96 3.08 -2.39 -0.01 3.96 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.70 8.11 -2.38 -0.02 1.68 16 Total: -1.00 -58.15 326.12 5.02 -53.12 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.00 Total: 24.49 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.86 Total: -0.67 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.75 Total: -73.34 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.12 Total: -44.80 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Total: -58.15 5.02 -53.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359417170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.922 kcal (2) G-P(sol) polarization free energy of solvation -58.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds