Wall clock time and date at job start Mon Mar 30 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00227 * 2 1 4 4 N 1.46500 * 109.47106 * 125.00072 * 3 2 1 5 5 C 1.46504 * 119.99884 * 266.65207 * 4 3 2 6 6 C 1.50699 * 109.47267 * 270.00234 * 5 4 3 7 7 H 1.08004 * 119.99704 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99618 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47464 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47194 * 119.99830 * 10 8 6 13 13 H 1.48505 * 109.47064 * 239.99780 * 10 8 6 14 14 C 1.34777 * 119.99716 * 86.65735 * 4 3 2 15 15 O 1.21282 * 119.99303 * 184.43337 * 14 4 3 16 16 C 1.50697 * 120.00126 * 4.43489 * 14 4 3 17 17 H 1.09000 * 109.89813 * 310.86591 * 16 14 4 18 18 O 1.43244 * 109.82761 * 189.93488 * 16 14 4 19 19 C 1.43645 * 109.96827 * 242.19845 * 18 16 14 20 20 H 1.08995 * 110.39611 * 94.53075 * 19 18 16 21 21 C 1.53005 * 110.30863 * 216.65725 * 19 18 16 22 22 C 1.54944 * 105.13730 * 335.57124 * 19 18 16 23 23 C 1.54383 * 109.82989 * 71.80386 * 16 14 4 24 24 H 1.08998 * 110.84185 * 259.05799 * 23 16 14 25 25 C 1.52995 * 110.84769 * 22.67664 * 23 16 14 26 26 H 1.08004 * 120.00244 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.00187 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46642 * 5.00001 * 3 2 1 30 30 H 1.09004 * 109.47527 * 245.00614 * 3 2 1 31 31 H 1.08995 * 109.46809 * 30.00565 * 5 4 3 32 32 H 1.09004 * 109.46491 * 150.00126 * 5 4 3 33 33 H 0.97001 * 119.99852 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47327 * 175.70961 * 21 19 18 35 35 H 1.08992 * 109.47036 * 295.71206 * 21 19 18 36 36 H 1.09005 * 109.46789 * 55.71345 * 21 19 18 37 37 H 1.09000 * 111.12675 * 154.36447 * 22 19 18 38 38 H 1.09000 * 111.12866 * 278.52893 * 22 19 18 39 39 H 1.09001 * 109.46975 * 174.28860 * 25 23 16 40 40 H 1.09005 * 109.47429 * 294.28468 * 25 23 16 41 41 H 1.08998 * 109.47623 * 54.28894 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5830 1.9316 2.4034 6 6 2.9348 3.3969 2.4047 7 1 3.4158 3.8375 1.5439 8 6 2.6426 4.1751 3.5047 9 7 2.0564 3.6386 4.5526 10 14 3.0781 5.9916 3.5060 11 1 3.7250 6.3465 2.2173 12 1 1.8422 6.7968 3.6781 13 1 4.0136 6.2756 4.6237 14 6 4.2274 0.8048 1.0020 15 8 4.9687 0.7542 1.9606 16 6 4.6857 0.2784 -0.3336 17 1 3.9272 -0.3836 -0.7515 18 8 5.9192 -0.4330 -0.1783 19 6 6.9566 0.2132 -0.9331 20 1 7.5135 0.9035 -0.2996 21 6 7.8994 -0.8281 -1.5395 22 6 6.2187 0.9880 -2.0539 23 6 4.9439 1.4548 -1.2995 24 1 4.1093 1.5807 -1.9891 25 6 5.2120 2.7466 -0.5248 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.5064 1.8162 2.5286 32 1 3.0997 1.4331 3.2236 33 1 1.8505 4.1861 5.3264 34 1 8.6347 -0.3289 -2.1705 35 1 8.4107 -1.3644 -0.7402 36 1 7.3242 -1.5330 -2.1400 37 1 6.8069 1.8397 -2.3955 38 1 5.9646 0.3298 -2.8847 39 1 5.4905 3.5370 -1.2217 40 1 4.3119 3.0395 0.0159 41 1 6.0244 2.5837 0.1834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359417172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:24 Heat of formation + Delta-G solvation = -63.011872 kcal Electronic energy + Delta-G solvation = -21762.220502 eV Core-core repulsion = 18642.784422 eV Total energy + Delta-G solvation = -3119.436080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41626 -38.06317 -35.62115 -33.34373 -33.20905 -32.10894 -31.81924 -28.12860 -26.73051 -26.26595 -25.30090 -22.91060 -21.19618 -20.74745 -19.86866 -18.34992 -16.87082 -16.43700 -16.30726 -15.74800 -15.11944 -14.73159 -14.42895 -14.27330 -13.83657 -13.25901 -13.08928 -12.82424 -12.56995 -12.42462 -12.25431 -12.02103 -11.90299 -11.68974 -11.44863 -11.24149 -11.05801 -10.88189 -10.83261 -10.76766 -10.60318 -10.48725 -10.12239 -9.74381 -9.57032 -9.17675 -8.54212 -8.43386 -7.62724 -6.03897 -4.08854 2.44387 3.28644 3.34784 3.37432 3.39973 3.69765 4.21926 4.43446 4.46281 4.71291 4.92757 5.04608 5.15781 5.23408 5.30321 5.33352 5.39879 5.46012 5.47884 5.62498 5.63644 5.70936 5.77229 5.89862 6.00623 6.04976 6.09403 6.17672 6.19206 6.29574 6.66922 6.79525 6.90671 7.04270 7.21147 7.49488 7.59377 7.93927 8.23912 8.43373 8.91401 9.13562 9.56352 11.04184 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.006795 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.353415 B = 4119.458278 C = 4976.838763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.131 3.869 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.060 0.940 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.503 3.497 15 O -0.525 6.525 16 C 0.065 3.935 17 H 0.094 0.906 18 O -0.351 6.351 19 C 0.073 3.927 20 H 0.072 0.928 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.112 4.112 24 H 0.093 0.907 25 C -0.162 4.162 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -5.736 -15.933 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.007 3.993 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.079 0.921 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.004 3.996 17 H 0.112 0.888 18 O -0.269 6.269 19 C 0.016 3.984 20 H 0.090 0.910 21 C -0.205 4.205 22 C -0.184 4.184 23 C -0.130 4.130 24 H 0.111 0.889 25 C -0.219 4.219 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.552 -5.893 -15.078 16.574 hybrid contribution 0.011 1.159 0.018 1.159 sum 3.562 -4.735 -15.060 16.184 Atomic orbital electron populations 1.23806 0.95795 1.01751 1.00603 1.23470 0.96482 0.99109 0.99894 1.20693 0.93193 0.95375 0.90035 1.48184 1.12002 1.57756 1.14721 1.19283 0.95611 0.92726 0.79597 1.21495 1.39520 0.93779 1.01653 0.92144 1.24930 0.95124 0.98724 0.95283 1.69947 1.41828 1.36023 1.05394 0.86490 0.78078 0.85008 0.78124 1.19790 1.20993 1.20920 1.20469 0.82313 0.78496 0.89835 1.90669 1.53586 1.55672 1.40160 1.22808 0.88498 0.94031 0.94275 0.88805 1.88476 1.17291 1.49940 1.71234 1.22981 0.89826 0.94121 0.91468 0.91044 1.21862 0.98770 0.98995 1.00886 1.23397 0.96365 1.00583 0.98087 1.22635 0.98509 0.95444 0.96457 0.88889 1.22077 1.04714 0.95014 1.00122 0.88782 0.88276 0.87792 0.89287 0.90770 0.95006 0.93862 0.92792 0.91402 0.91874 0.92056 0.89774 0.90315 0.92463 0.89495 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 29.02 0.42 -1.93 16 2 C -0.17 -2.44 9.44 -36.02 -0.34 -2.78 16 3 C 0.13 2.11 5.34 -5.19 -0.03 2.08 16 4 N -0.59 -12.52 1.68 -176.43 -0.30 -12.81 16 5 C 0.25 6.46 5.18 -5.19 -0.03 6.43 16 6 C -0.53 -14.55 9.38 -34.44 -0.32 -14.87 16 7 H 0.06 1.63 6.09 -52.48 -0.32 1.31 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.50 10.87 5.06 -10.99 -0.06 10.82 16 15 O -0.53 -14.01 16.10 -13.91 -0.22 -14.23 16 16 C 0.07 1.09 3.00 -27.16 -0.08 1.01 16 17 H 0.09 1.36 6.92 -51.93 -0.36 1.00 16 18 O -0.35 -6.21 10.27 -54.70 -0.56 -6.77 16 19 C 0.07 1.01 3.78 -25.70 -0.10 0.91 16 20 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 21 C -0.15 -1.57 9.62 37.16 0.36 -1.22 16 22 C -0.15 -1.65 6.07 -24.48 -0.15 -1.80 16 23 C -0.11 -1.52 2.68 -88.68 -0.24 -1.75 16 24 H 0.09 1.04 6.82 -51.93 -0.35 0.69 16 25 C -0.16 -2.63 8.08 37.16 0.30 -2.33 16 26 H 0.09 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 28 H 0.10 1.44 7.70 -52.48 -0.40 1.04 16 29 H 0.09 1.47 7.70 -51.93 -0.40 1.07 16 30 H 0.07 1.00 4.77 -51.93 -0.25 0.75 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.30 7.37 -51.93 -0.38 0.92 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.08 0.74 8.06 -51.93 -0.42 0.33 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.66 4.87 -51.93 -0.25 1.41 16 41 H 0.06 1.15 7.45 -51.93 -0.39 0.77 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -33.27 328.06 -7.21 -40.48 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.43 Total: 1.38 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.36 Total: -3.79 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.44 Total: -38.61 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.79 Total: -21.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.27 -7.21 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359417172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.532 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds