Wall clock time and date at job start Mon Mar 30 2020 00:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46580 * 2 1 4 4 C 1.53040 * 109.46305 * 240.01849 * 2 1 3 5 5 C 1.53099 * 109.28770 * 180.80962 * 4 2 1 6 6 C 1.53117 * 109.15741 * 57.65973 * 5 4 2 7 7 H 1.09001 * 109.50387 * 62.28641 * 6 5 4 8 8 C 1.50702 * 109.50035 * 182.40378 * 6 5 4 9 9 O 1.20825 * 119.99884 * 113.83242 * 8 6 5 10 10 O 1.34228 * 120.00233 * 293.82459 * 8 6 5 11 11 C 1.53039 * 109.27927 * 302.34352 * 6 5 4 12 12 N 1.46843 * 109.52009 * 59.18163 * 11 6 5 13 13 C 1.46901 * 111.00050 * 174.16046 * 12 11 6 14 14 C 1.53000 * 109.47017 * 57.39299 * 13 12 11 15 15 C 1.50704 * 115.55290 * 281.67390 * 14 13 12 16 16 H 1.08004 * 120.00168 * 144.68287 * 15 14 13 17 17 C 1.37885 * 119.99683 * 324.68803 * 15 14 13 18 18 N 1.31507 * 119.99870 * 336.92976 * 17 15 14 19 19 Si 1.86801 * 119.99691 * 156.93197 * 17 15 14 20 20 H 1.48498 * 109.47139 * 4.91402 * 19 17 15 21 21 H 1.48495 * 109.46778 * 124.92007 * 19 17 15 22 22 H 1.48503 * 109.46748 * 244.91706 * 19 17 15 23 23 C 1.53002 * 117.50066 * 135.96609 * 14 13 12 24 24 C 1.52999 * 117.49879 * 67.34231 * 14 13 12 25 25 H 1.08996 * 109.47322 * 307.59513 * 1 2 3 26 26 H 1.09004 * 109.47000 * 67.58972 * 1 2 3 27 27 H 1.08997 * 109.47368 * 187.58555 * 1 2 3 28 28 H 1.09002 * 109.50079 * 300.75454 * 4 2 1 29 29 H 1.08998 * 109.50467 * 60.87925 * 4 2 1 30 30 H 1.09000 * 109.52208 * 297.75324 * 5 4 2 31 31 H 1.09007 * 109.57504 * 177.59386 * 5 4 2 32 32 H 0.96698 * 117.00107 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.46213 * 299.16463 * 11 6 5 34 34 H 1.09001 * 109.45920 * 179.19304 * 11 6 5 35 35 H 1.08998 * 109.47221 * 177.38836 * 13 12 11 36 36 H 1.08997 * 109.46884 * 297.39536 * 13 12 11 37 37 H 0.97002 * 119.99972 * 185.02709 * 18 17 15 38 38 H 1.08994 * 117.49770 * 0.02562 * 23 14 13 39 39 H 1.08998 * 117.49829 * 145.01862 * 23 14 13 40 40 H 1.08998 * 117.50092 * 214.97969 * 24 14 13 41 41 H 1.08998 * 117.50226 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5707 -0.7364 -1.2356 6 6 4.0545 -1.4192 0.0466 7 1 3.7120 -2.4540 0.0594 8 6 5.5603 -1.3861 0.0969 9 8 6.1222 -0.7372 0.9471 10 8 6.2772 -2.0777 -0.8028 11 6 3.4864 -0.6780 1.2590 12 7 2.0192 -0.6918 1.1994 13 6 1.4374 -0.1105 2.4166 14 6 1.9598 1.3157 2.6007 15 6 3.3541 1.4299 3.1611 16 1 4.0073 2.2224 2.8267 17 6 3.7958 0.5226 4.1008 18 7 2.9282 -0.1362 4.8374 19 14 5.6267 0.2295 4.3275 20 1 6.3889 1.1724 3.4700 21 1 5.9907 0.4494 5.7503 22 1 5.9559 -1.1664 3.9423 23 6 0.9482 2.3930 2.9970 24 6 1.5211 2.3662 1.5785 25 1 -0.3634 0.6269 0.8142 26 1 -0.3633 0.3918 -0.9501 27 1 -0.3634 -1.0186 0.1357 28 1 1.6657 -1.7448 -1.2574 29 1 1.6897 -0.1983 -2.1399 30 1 3.9456 0.2866 -1.2673 31 1 3.9385 -1.2862 -2.1021 32 1 7.2401 -2.0260 -0.7302 33 1 3.8404 0.3529 1.2531 34 1 3.8174 -1.1703 2.1735 35 1 0.3513 -0.0907 2.3264 36 1 1.7195 -0.7150 3.2786 37 1 3.2388 -0.7195 5.5475 38 1 -0.0893 2.0856 3.1270 39 1 1.2911 3.1845 3.6634 40 1 2.2407 3.1401 1.3117 41 1 0.8599 2.0415 0.7751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397058282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:50 Heat of formation + Delta-G solvation = -57.038089 kcal Electronic energy + Delta-G solvation = -22613.269582 eV Core-core repulsion = 19494.092546 eV Total energy + Delta-G solvation = -3119.177037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26253 -38.92136 -36.06414 -35.73311 -32.81630 -32.36888 -31.49158 -27.43856 -25.86115 -25.60951 -23.00223 -22.22357 -21.33418 -20.31465 -19.24502 -18.64980 -17.68589 -16.48501 -15.90709 -15.47577 -14.99897 -14.53810 -14.35399 -14.13719 -13.44501 -13.34857 -13.13767 -12.68940 -12.17360 -12.08381 -12.01862 -11.50736 -11.42230 -11.22310 -10.98689 -10.89810 -10.71454 -10.51156 -10.41453 -10.35509 -10.10321 -10.00928 -9.80442 -9.74670 -9.48157 -8.96552 -8.68058 -7.95266 -7.18959 -6.09280 -3.98176 2.56536 3.29852 3.36681 3.47683 3.60603 4.45177 4.79087 5.01483 5.04397 5.15616 5.22150 5.48220 5.54488 5.73150 5.80911 5.94378 5.95441 6.02377 6.08161 6.12736 6.19854 6.33773 6.40603 6.44972 6.48771 6.60290 6.63928 6.73173 6.75233 6.79838 6.89398 7.03181 7.20915 7.30235 7.42736 7.59822 7.93308 8.10319 8.17040 8.24174 8.49287 8.90115 9.53539 10.93266 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.012548 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.908565 B = 2230.878346 C = 3788.882196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.107 4.107 6 C -0.082 4.082 7 H 0.105 0.895 8 C 0.476 3.524 9 O -0.498 6.498 10 O -0.524 6.524 11 C 0.077 3.923 12 N -0.523 5.523 13 C 0.079 3.921 14 C 0.029 3.971 15 C -0.492 4.492 16 H 0.058 0.942 17 C 0.083 3.917 18 N -0.866 5.866 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.277 1.277 23 C -0.202 4.202 24 C -0.224 4.224 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.402 0.598 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.120 0.880 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -3.773 -11.415 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.102 4.102 7 H 0.123 0.877 8 C 0.317 3.683 9 O -0.384 6.384 10 O -0.336 6.336 11 C -0.051 4.051 12 N -0.247 5.247 13 C -0.047 4.047 14 C 0.027 3.973 15 C -0.528 4.528 16 H 0.076 0.924 17 C -0.121 4.121 18 N -0.502 5.502 19 Si 0.708 3.292 20 H -0.193 1.193 21 H -0.221 1.221 22 H -0.203 1.203 23 C -0.241 4.241 24 C -0.262 4.262 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.865 -4.303 -11.120 11.955 hybrid contribution 1.933 0.834 0.354 2.135 sum 1.068 -3.470 -10.766 11.362 Atomic orbital electron populations 1.21904 0.95443 1.02042 1.00875 1.21946 0.94715 0.97614 0.90834 0.91864 1.21607 0.93968 1.01413 0.97497 1.21508 0.97001 1.00581 0.95338 1.21251 0.85499 1.03755 0.99664 0.87731 1.23746 0.91637 0.75270 0.77607 1.90769 1.72787 1.39378 1.35492 1.84553 1.25006 1.68274 1.55722 1.22047 0.87876 1.01161 0.93987 1.62372 1.06602 1.53381 1.02321 1.22014 0.95600 0.94973 0.92162 1.19675 0.94109 0.88343 0.95180 1.20392 0.95844 1.12797 1.23787 0.92354 1.24833 0.97198 0.95322 0.94724 1.69929 1.33559 1.29192 1.17476 0.86733 0.86427 0.79507 0.76552 1.19260 1.22085 1.20288 1.22906 0.98012 1.06548 0.96626 1.23228 1.04679 1.05769 0.92481 0.92100 0.93283 0.92286 0.91392 0.91892 0.91777 0.91410 0.74034 0.90255 0.90291 0.93559 0.86244 0.92762 0.91984 0.90820 0.91277 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.75 37.16 0.29 -1.90 16 2 C 0.06 0.97 1.75 -67.72 -0.12 0.85 16 3 H 0.06 1.18 4.86 -51.93 -0.25 0.93 16 4 C -0.11 -1.49 5.37 -26.66 -0.14 -1.63 16 5 C -0.11 -1.53 5.27 -26.62 -0.14 -1.67 16 6 C -0.08 -1.38 2.79 -91.69 -0.26 -1.64 16 7 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 8 C 0.48 8.18 7.58 36.01 0.27 8.45 16 9 O -0.50 -10.59 16.34 -18.75 -0.31 -10.89 16 10 O -0.52 -6.84 13.42 -39.25 -0.53 -7.37 16 11 C 0.08 1.62 2.65 -3.84 -0.01 1.61 16 12 N -0.52 -10.37 4.69 -226.69 -1.06 -11.43 16 13 C 0.08 1.78 4.93 -3.82 -0.02 1.76 16 14 C 0.03 0.68 1.34 -155.66 -0.21 0.48 16 15 C -0.49 -13.16 6.40 -34.44 -0.22 -13.38 16 16 H 0.06 1.64 7.92 -52.48 -0.42 1.22 16 17 C 0.08 2.25 3.63 -17.82 -0.06 2.18 16 18 N -0.87 -23.70 11.17 55.43 0.62 -23.08 16 19 Si 0.88 22.29 28.68 -169.99 -4.88 17.41 16 20 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.20 -4.59 9.88 -26.73 -0.26 -4.85 16 24 C -0.22 -4.76 7.79 -26.73 -0.21 -4.97 16 25 H 0.06 1.00 5.37 -51.93 -0.28 0.72 16 26 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.40 3.55 9.10 45.56 0.41 3.96 16 33 H 0.08 1.89 5.71 -51.93 -0.30 1.59 16 34 H 0.08 1.90 6.52 -51.93 -0.34 1.56 16 35 H 0.05 0.98 5.82 -51.93 -0.30 0.68 16 36 H 0.12 3.06 5.47 -51.93 -0.28 2.78 16 37 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.55 4.18 -51.93 -0.22 1.34 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -29.47 307.39 -7.94 -37.41 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.33 Total: 8.02 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.09 Total: -14.71 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.44 Total: -34.51 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.83 Total: -18.26 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.88 Total: 17.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.47 -7.94 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397058282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.623 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds