Wall clock time and date at job start Mon Mar 30 2020 00:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.89786 * 2 1 4 4 C 1.54381 * 109.82983 * 239.06943 * 2 1 3 5 5 C 1.55302 * 102.24893 * 219.12557 * 4 2 1 6 6 H 1.09002 * 111.13375 * 276.16941 * 5 4 2 7 7 C 1.50709 * 111.12154 * 152.05146 * 5 4 2 8 8 O 1.21278 * 119.99905 * 0.02562 * 7 5 4 9 9 N 1.34773 * 119.99824 * 180.02562 * 7 5 4 10 10 C 1.46930 * 120.63648 * 0.02562 * 9 7 5 11 11 C 1.53189 * 108.77620 * 126.36525 * 10 9 7 12 12 C 1.53036 * 109.31358 * 54.64438 * 11 10 9 13 13 C 1.53049 * 109.53334 * 298.63076 * 12 11 10 14 14 H 1.08996 * 109.49456 * 301.38058 * 13 12 11 15 15 C 1.50699 * 109.49459 * 181.31864 * 13 12 11 16 16 H 1.08010 * 119.99662 * 245.66851 * 15 13 12 17 17 C 1.37870 * 120.00346 * 65.66900 * 15 13 12 18 18 N 1.31516 * 120.00490 * 197.50352 * 17 15 13 19 19 Si 1.86801 * 120.00015 * 17.50928 * 17 15 13 20 20 H 1.48504 * 109.47312 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47240 * 59.99613 * 19 17 15 22 22 H 1.48501 * 109.46703 * 299.99757 * 19 17 15 23 23 C 1.46928 * 120.63426 * 179.97438 * 9 7 5 24 24 C 1.54947 * 100.94501 * 34.13781 * 5 4 2 25 25 O 1.43241 * 109.83260 * 120.93109 * 2 1 3 26 26 H 1.08999 * 109.46995 * 180.93510 * 1 2 3 27 27 H 1.09001 * 109.46880 * 300.93544 * 1 2 3 28 28 H 1.08997 * 109.47076 * 60.93178 * 1 2 3 29 29 H 1.08997 * 110.84656 * 100.93952 * 4 2 1 30 30 H 1.08999 * 110.84695 * 337.31657 * 4 2 1 31 31 H 1.09011 * 109.58204 * 6.58545 * 10 9 7 32 32 H 1.08997 * 109.70561 * 246.22847 * 10 9 7 33 33 H 1.09000 * 109.49872 * 294.68615 * 11 10 9 34 34 H 1.09000 * 109.49438 * 174.59169 * 11 10 9 35 35 H 1.09002 * 109.46150 * 178.61307 * 12 11 10 36 36 H 1.08994 * 109.46201 * 58.64913 * 12 11 10 37 37 H 0.97005 * 119.99617 * 354.61947 * 18 17 15 38 38 H 1.08999 * 109.58986 * 113.83934 * 23 9 7 39 39 H 1.09004 * 109.58105 * 353.41806 * 23 9 7 40 40 H 1.08999 * 110.31246 * 82.46721 * 24 5 4 41 41 H 1.08997 * 110.31021 * 204.64059 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0537 -0.7465 -1.2457 5 6 3.2730 -1.5220 -0.6768 6 1 4.1623 -0.8922 -0.6513 7 6 3.5277 -2.7839 -1.4603 8 8 2.8150 -3.0689 -2.3993 9 7 4.5474 -3.5957 -1.1175 10 6 5.4192 -3.2643 0.0179 11 6 5.4561 -4.4587 0.9763 12 6 5.8766 -5.7126 0.2064 13 6 4.8522 -6.0063 -0.8921 14 1 3.8681 -6.1444 -0.4442 15 6 5.2499 -7.2594 -1.6287 16 1 5.5375 -7.2063 -2.6684 17 6 5.2465 -8.4735 -0.9755 18 7 5.9036 -9.4943 -1.4814 19 14 4.3087 -8.6688 0.6282 20 1 4.4616 -10.0600 1.1249 21 1 2.8701 -8.3810 0.3985 22 1 4.8484 -7.7208 1.6358 23 6 4.8080 -4.8297 -1.8713 24 6 2.7748 -1.8444 0.7545 25 8 2.0160 -0.6926 1.1558 26 1 -0.3633 -1.0275 0.0168 27 1 -0.3633 0.5283 0.8815 28 1 -0.3633 0.4993 -0.8982 29 1 2.3671 -0.0424 -2.0165 30 1 1.3012 -1.4349 -1.6303 31 1 5.0256 -2.3907 0.5378 32 1 6.4262 -3.0528 -0.3414 33 1 4.4662 -4.6107 1.4065 34 1 6.1736 -4.2635 1.7733 35 1 5.9276 -6.5592 0.8911 36 1 6.8558 -5.5508 -0.2441 37 1 6.3252 -9.4165 -2.3516 38 1 5.7648 -4.7477 -2.3870 39 1 4.0113 -4.9890 -2.5979 40 1 2.1402 -2.7306 0.7436 41 1 3.6210 -1.9924 1.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397648411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:28 Heat of formation + Delta-G solvation = -115.295288 kcal Electronic energy + Delta-G solvation = -21504.737532 eV Core-core repulsion = 18383.034274 eV Total energy + Delta-G solvation = -3121.703259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75359 -39.99415 -38.47810 -35.50712 -33.76224 -33.30264 -32.76136 -31.83435 -27.44733 -26.71361 -26.48843 -23.82574 -23.10405 -22.08411 -21.31530 -19.90247 -19.51422 -18.59997 -17.58332 -17.23055 -16.42321 -16.31849 -15.81557 -15.37878 -15.26750 -14.92465 -14.77427 -14.53149 -14.40787 -13.92563 -13.88877 -13.55219 -13.50013 -13.07188 -12.82459 -12.71566 -12.36016 -12.22800 -12.03226 -11.95179 -11.86126 -11.77089 -11.45798 -11.33726 -10.89689 -10.84142 -10.55416 -10.40963 -9.64752 -8.76786 -6.39874 1.41312 1.48738 1.50784 1.69586 1.93751 2.45011 2.77554 3.04236 3.22886 3.54977 3.77502 3.91877 3.98358 4.06926 4.10807 4.17814 4.22411 4.31440 4.42974 4.48927 4.55307 4.66786 4.71177 4.74459 4.76804 4.85743 4.89325 4.97609 4.98589 5.14064 5.16534 5.23486 5.31935 5.41150 5.44710 5.69920 5.96973 5.99070 6.06564 6.43321 6.53973 7.08700 7.37562 8.61370 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.005099 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.244559 B = 5490.029631 C = 5609.527141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.107 0.893 4 C -0.133 4.133 5 C -0.139 4.139 6 H 0.144 0.856 7 C 0.515 3.485 8 O -0.590 6.590 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.134 4.134 12 C -0.121 4.121 13 C 0.013 3.987 14 H 0.015 0.985 15 C -0.605 4.605 16 H 0.016 0.984 17 C -0.016 4.016 18 N -0.938 5.938 19 Si 1.082 2.918 20 H -0.290 1.290 21 H -0.277 1.277 22 H -0.230 1.230 23 C 0.138 3.862 24 C 0.066 3.934 25 O -0.386 6.386 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.252 0.748 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 22.084 8.614 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.125 0.875 4 C -0.171 4.171 5 C -0.160 4.160 6 H 0.161 0.839 7 C 0.305 3.695 8 O -0.470 6.470 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.172 4.172 12 C -0.159 4.159 13 C -0.007 4.007 14 H 0.033 0.967 15 C -0.643 4.643 16 H 0.034 0.966 17 C -0.214 4.214 18 N -0.574 5.574 19 Si 0.904 3.096 20 H -0.216 1.216 21 H -0.203 1.203 22 H -0.154 1.154 23 C 0.015 3.985 24 C -0.011 4.011 25 O -0.306 6.306 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.023 20.947 9.541 23.559 hybrid contribution 0.515 -0.062 -2.556 2.608 sum -4.508 20.885 6.985 22.479 Atomic orbital electron populations 1.22159 0.94452 1.02103 1.03346 1.22937 0.94977 0.96931 0.83363 0.87537 1.23108 0.96045 0.99218 0.98685 1.23059 1.02623 0.94184 0.96104 0.83868 1.20886 0.79251 0.85291 0.84113 1.90661 1.48762 1.75546 1.32069 1.48381 1.30582 1.22335 1.32369 1.22187 0.95064 0.98793 0.86098 1.22017 1.02819 0.94114 0.98256 1.21906 0.98887 0.97709 0.97397 1.19228 0.95054 0.92339 0.94102 0.96702 1.22154 1.49919 0.94458 0.97746 0.96564 1.27149 0.94825 0.92123 1.07352 1.70992 1.32195 1.35948 1.18309 0.83614 0.75835 0.76880 0.73311 1.21577 1.20330 1.15363 1.21329 0.99479 0.83347 0.94361 1.23460 0.95895 0.88825 0.92918 1.88434 1.70996 1.40196 1.30984 0.93730 0.91209 0.89949 0.88002 0.91419 0.86406 0.89790 0.91831 0.87706 0.92936 0.93155 0.93915 0.92758 0.93033 0.93579 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.44 71.98 0.68 -1.99 16 2 C 0.07 1.29 4.16 31.06 0.13 1.42 16 3 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.13 -2.70 5.70 31.85 0.18 -2.52 16 5 C -0.14 -2.94 2.43 -10.08 -0.02 -2.96 16 6 H 0.14 2.11 7.78 -2.39 -0.02 2.09 16 7 C 0.52 16.46 7.06 87.66 0.62 17.08 16 8 O -0.59 -24.37 15.12 -3.02 -0.05 -24.41 16 9 N -0.61 -19.48 2.97 -818.98 -2.43 -21.91 16 10 C 0.10 2.25 6.05 86.36 0.52 2.77 16 11 C -0.13 -3.46 6.08 30.67 0.19 -3.28 16 12 C -0.12 -4.60 4.85 30.62 0.15 -4.45 16 13 C 0.01 0.58 1.83 -11.48 -0.02 0.56 16 14 H 0.01 0.71 6.80 -2.39 -0.02 0.70 16 15 C -0.60 -34.57 8.82 25.60 0.23 -34.34 16 16 H 0.02 1.02 7.99 -2.91 -0.02 1.00 16 17 C -0.02 -0.95 5.33 84.65 0.45 -0.50 16 18 N -0.94 -59.14 13.69 21.45 0.29 -58.85 16 19 Si 1.08 49.93 26.35 68.60 1.81 51.74 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.23 -8.99 5.63 99.48 0.56 -8.43 16 23 C 0.14 5.80 5.65 86.34 0.49 6.29 16 24 C 0.07 1.33 6.59 72.65 0.48 1.81 16 25 O -0.39 -8.13 11.02 -148.98 -1.64 -9.77 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.76 7.06 -2.39 -0.02 1.74 16 31 H 0.12 1.75 4.08 -2.38 -0.01 1.74 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.12 4.82 -2.39 -0.01 2.10 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.25 16.12 8.73 -92.70 -0.81 15.31 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 2.47 7.01 -2.38 -0.02 2.45 16 40 H 0.05 1.14 8.02 -2.39 -0.02 1.12 16 41 H 0.12 1.82 6.33 -2.39 -0.02 1.80 16 Total: -1.00 -73.61 313.04 2.87 -70.75 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.82 Total: 12.57 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.07 Total: -20.11 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.14 Total: -80.76 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.69 Total: -34.18 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.81 Total: 51.74 kcal Total: -73.61 2.87 -70.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397648411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.549 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds