Wall clock time and date at job start Mon Mar 30 2020 00:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 110.67563 * 2 1 4 4 O 1.44377 * 110.62140 * 237.03433 * 2 1 3 5 5 C 1.43744 * 106.98032 * 201.44055 * 4 2 1 6 6 C 1.54097 * 107.29232 * 26.50972 * 5 4 2 7 7 C 1.54813 * 104.18879 * 357.97414 * 6 5 4 8 8 H 1.09002 * 110.90684 * 97.31509 * 7 6 5 9 9 C 1.50704 * 110.90687 * 220.88491 * 7 6 5 10 10 O 1.21280 * 119.99812 * 115.67145 * 9 7 6 11 11 N 1.34772 * 120.00146 * 295.66846 * 9 7 6 12 12 C 1.46931 * 120.62866 * 359.72109 * 11 9 7 13 13 C 1.52763 * 109.00648 * 233.58126 * 12 11 9 14 14 C 1.53040 * 109.38657 * 305.58992 * 13 12 11 15 15 C 1.53039 * 109.53404 * 61.24100 * 14 13 12 16 16 H 1.09002 * 109.50178 * 58.58774 * 15 14 13 17 17 C 1.50703 * 109.52109 * 178.66883 * 15 14 13 18 18 H 1.08004 * 120.00369 * 119.85223 * 17 15 14 19 19 C 1.37879 * 120.00015 * 299.85367 * 17 15 14 20 20 N 1.31517 * 119.99829 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00266 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47263 * 89.99677 * 21 19 17 23 23 H 1.48503 * 109.47346 * 210.00153 * 21 19 17 24 24 H 1.48504 * 109.47181 * 330.00300 * 21 19 17 25 25 C 1.46930 * 120.63215 * 180.02562 * 11 9 7 26 26 H 1.09001 * 109.47691 * 297.03505 * 1 2 3 27 27 H 1.09003 * 109.47427 * 57.03749 * 1 2 3 28 28 H 1.09004 * 109.47280 * 177.03426 * 1 2 3 29 29 H 1.09005 * 109.87885 * 267.09111 * 5 4 2 30 30 H 1.08995 * 110.00799 * 146.00633 * 5 4 2 31 31 H 1.09004 * 110.49131 * 239.29645 * 6 5 4 32 32 H 1.09001 * 110.60267 * 116.70737 * 6 5 4 33 33 H 1.08998 * 109.58570 * 353.41807 * 12 11 9 34 34 H 1.08998 * 109.58201 * 113.84446 * 12 11 9 35 35 H 1.09002 * 109.55909 * 185.55031 * 13 12 11 36 36 H 1.08997 * 109.38419 * 65.52110 * 13 12 11 37 37 H 1.08999 * 109.45899 * 301.22448 * 14 13 12 38 38 H 1.09000 * 109.45881 * 181.26158 * 14 13 12 39 39 H 0.97000 * 119.99593 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58385 * 246.15471 * 25 11 9 41 41 H 1.09000 * 109.58233 * 6.43654 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0384 -0.7353 -1.1337 5 6 3.3839 -1.1255 -0.8118 6 6 3.4794 -1.2167 0.7235 7 6 2.0757 -0.7893 1.2171 8 1 1.4549 -1.6606 1.4259 9 6 2.1795 0.0972 2.4314 10 8 1.8030 1.2488 2.3754 11 7 2.6908 -0.3895 3.5795 12 6 3.1454 -1.7841 3.6645 13 6 2.4564 -2.4607 4.8482 14 6 2.7031 -1.6403 6.1164 15 6 2.1080 -0.2409 5.9443 16 1 1.0400 -0.3219 5.7423 17 6 2.3224 0.5559 7.2054 18 1 2.8934 1.4722 7.1748 19 6 1.7895 0.1153 8.3983 20 7 1.0946 -1.0007 8.4356 21 14 2.0545 1.1033 9.9612 22 1 0.9526 2.0864 10.1183 23 1 2.0704 0.1867 11.1296 24 1 3.3512 1.8223 9.8785 25 6 2.7979 0.4625 4.7718 26 1 -0.3634 0.4671 0.9153 27 1 -0.3634 0.5591 -0.8622 28 1 -0.3634 -1.0263 -0.0532 29 1 4.0854 -0.3782 -1.1830 30 1 3.6070 -2.0957 -1.2553 31 1 4.2406 -0.5332 1.0998 32 1 3.6984 -2.2383 1.0341 33 1 2.8879 -2.3091 2.7447 34 1 4.2252 -1.8080 3.8114 35 1 2.8597 -3.4647 4.9801 36 1 1.3850 -2.5214 4.6567 37 1 3.7755 -1.5597 6.2937 38 1 2.2307 -2.1339 6.9657 39 1 0.7195 -1.3105 9.2748 40 1 3.8487 0.6257 5.0109 41 1 2.3134 1.4201 4.5812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397794263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:33 Heat of formation + Delta-G solvation = -94.923254 kcal Electronic energy + Delta-G solvation = -21488.179803 eV Core-core repulsion = 18367.359942 eV Total energy + Delta-G solvation = -3120.819861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49409 -38.64616 -36.76376 -33.70632 -32.46192 -31.65318 -31.23930 -30.11166 -26.75144 -25.13030 -24.52130 -22.12290 -21.91994 -21.51874 -19.68837 -18.48586 -17.16168 -16.45001 -16.04038 -15.80264 -15.30775 -14.76119 -14.59466 -14.22408 -13.88119 -13.57765 -13.16098 -12.97064 -12.70571 -12.44986 -12.35148 -12.23611 -11.97510 -11.78609 -11.39872 -11.11192 -11.00936 -10.87376 -10.80874 -10.73290 -10.35447 -9.99827 -9.85905 -9.72229 -9.50911 -9.30736 -8.86750 -8.42375 -7.96264 -6.05370 -4.12589 2.92910 3.27906 3.34297 3.35938 3.42032 3.76838 4.39100 4.42628 4.59325 4.68646 4.88616 5.09848 5.12998 5.24336 5.32115 5.38668 5.50230 5.53985 5.57963 5.65936 5.75636 5.81538 5.84779 6.04809 6.06619 6.21595 6.27906 6.34416 6.43032 6.60900 6.75174 6.81471 6.91320 7.11374 7.28373 7.65185 7.86234 7.94914 8.03286 8.33041 8.55789 8.90983 9.52596 11.00239 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035536 B = 0.004645 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.733499 B = 6026.291699 C = 6305.299218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.084 0.916 4 O -0.377 6.377 5 C 0.050 3.950 6 C -0.147 4.147 7 C -0.141 4.141 8 H 0.109 0.891 9 C 0.520 3.480 10 O -0.548 6.548 11 N -0.599 5.599 12 C 0.107 3.893 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.117 3.883 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -4.432 -14.229 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.102 0.898 4 O -0.296 6.296 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.163 4.163 8 H 0.127 0.873 9 C 0.307 3.693 10 O -0.427 6.427 11 N -0.331 5.331 12 C -0.016 4.016 13 C -0.175 4.175 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.004 4.004 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.751 -3.979 -14.308 15.318 hybrid contribution 0.331 0.300 1.237 1.316 sum 4.083 -3.678 -13.071 14.179 Atomic orbital electron populations 1.21751 0.92633 1.02575 1.03076 1.22941 0.95610 0.95422 0.82401 0.89845 1.88865 1.27587 1.73949 1.39228 1.23093 0.84940 1.00455 0.94222 1.23019 0.96310 1.03166 0.95971 1.22915 0.98448 1.00017 0.94898 0.87307 1.20078 0.77638 0.87738 0.83870 1.90666 1.49470 1.18468 1.84060 1.48285 1.60706 1.12532 1.11542 1.21766 0.98736 0.81695 0.99431 1.21943 1.00203 0.98582 0.96734 1.21629 0.99346 0.97903 0.96150 1.18962 0.95539 0.92141 0.91253 0.95286 1.21069 1.33801 1.08037 0.92419 0.92482 1.24934 0.94841 0.95032 0.98964 1.69873 1.35130 1.21276 1.26492 0.86575 0.78663 0.79926 0.82731 1.20635 1.21235 1.19875 1.22012 1.00448 0.94261 0.83690 0.90369 0.91833 0.92044 0.92323 0.89699 0.90140 0.89481 0.90945 0.91905 0.92382 0.92389 0.94565 0.88616 0.92953 0.92688 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.65 37.15 0.36 -1.44 16 2 C 0.09 1.27 3.05 -25.68 -0.08 1.19 16 3 H 0.08 1.24 7.48 -51.93 -0.39 0.86 16 4 O -0.38 -4.92 11.22 -35.23 -0.40 -5.32 16 5 C 0.05 0.51 7.70 37.73 0.29 0.80 16 6 C -0.15 -1.55 5.40 -25.20 -0.14 -1.69 16 7 C -0.14 -1.88 1.95 -89.76 -0.17 -2.06 16 8 H 0.11 1.36 7.59 -51.93 -0.39 0.96 16 9 C 0.52 9.08 6.97 -10.99 -0.08 9.00 16 10 O -0.55 -11.40 15.18 5.56 0.08 -11.32 16 11 N -0.60 -10.72 2.98 -173.05 -0.52 -11.23 16 12 C 0.11 1.58 5.72 -3.93 -0.02 1.56 16 13 C -0.14 -2.35 6.06 -26.83 -0.16 -2.51 16 14 C -0.11 -2.46 4.97 -26.69 -0.13 -2.59 16 15 C 0.04 0.97 2.25 -91.67 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -13.78 8.56 -34.44 -0.29 -14.07 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 21 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 2.48 5.66 -3.73 -0.02 2.46 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.09 0.75 7.01 -51.93 -0.36 0.39 16 33 H 0.07 0.86 4.56 -51.93 -0.24 0.63 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 2.39 6.05 -51.93 -0.31 2.08 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.81 7.00 -51.93 -0.36 1.45 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -29.61 317.95 -7.84 -37.45 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.66 Total: 0.76 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.75 Total: -6.96 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.11 Total: -35.30 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.31 Total: -16.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.61 -7.84 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.474 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds