Wall clock time and date at job start Mon Mar 30 2020 00:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.52993 * 2 1 4 4 C 1.53116 * 109.50240 * 120.09844 * 2 1 3 5 5 C 1.53118 * 109.15865 * 177.59621 * 4 2 1 6 6 H 1.09004 * 109.53717 * 62.30867 * 5 4 2 7 7 C 1.50702 * 109.50379 * 182.40428 * 5 4 2 8 8 O 1.20822 * 120.00318 * 359.80640 * 7 5 4 9 9 O 1.34237 * 119.99972 * 179.80222 * 7 5 4 10 10 C 1.53042 * 109.28264 * 302.34865 * 5 4 2 11 11 N 1.46851 * 109.52110 * 59.17397 * 10 5 4 12 12 C 1.46905 * 110.99714 * 174.16518 * 11 10 5 13 13 C 1.52998 * 109.47179 * 75.71134 * 12 11 10 14 14 C 1.50707 * 115.55180 * 296.23998 * 13 12 11 15 15 H 1.08001 * 119.99574 * 114.46270 * 14 13 12 16 16 C 1.37876 * 119.99815 * 294.74339 * 14 13 12 17 17 N 1.31512 * 119.99769 * 173.39470 * 16 14 13 18 18 Si 1.86795 * 119.99976 * 353.39045 * 16 14 13 19 19 H 1.48503 * 109.47108 * 86.83793 * 18 16 14 20 20 H 1.48498 * 109.47153 * 206.83592 * 18 16 14 21 21 H 1.48495 * 109.47272 * 326.84112 * 18 16 14 22 22 C 1.52996 * 117.49770 * 81.90850 * 13 12 11 23 23 C 1.52992 * 117.49718 * 150.56804 * 13 12 11 24 24 C 1.46842 * 111.20104 * 298.26204 * 11 10 5 25 25 H 1.08996 * 109.46835 * 299.89832 * 1 2 3 26 26 H 1.08998 * 109.47258 * 59.90491 * 1 2 3 27 27 H 1.09001 * 109.46801 * 179.90115 * 1 2 3 28 28 H 1.09000 * 109.52546 * 57.69852 * 4 2 1 29 29 H 1.08994 * 109.57748 * 297.53408 * 4 2 1 30 30 H 0.96691 * 116.99869 * 180.02562 * 9 7 5 31 31 H 1.09005 * 109.45655 * 299.16686 * 10 5 4 32 32 H 1.08996 * 109.45774 * 179.19258 * 10 5 4 33 33 H 1.09000 * 109.46919 * 315.71410 * 12 11 10 34 34 H 1.08989 * 109.46794 * 195.71481 * 12 11 10 35 35 H 0.96997 * 119.99995 * 185.00351 * 17 16 14 36 36 H 1.09000 * 117.50322 * 215.00197 * 22 13 12 37 37 H 1.08997 * 117.50099 * 0.02562 * 22 13 12 38 38 H 1.08994 * 117.50172 * 359.97438 * 23 13 12 39 39 H 1.09008 * 117.49639 * 144.97726 * 23 13 12 40 40 H 1.08999 * 109.46505 * 181.75713 * 24 11 10 41 41 H 1.09002 * 109.46164 * 301.73048 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2107 6 1 3.9684 0.2430 1.2301 7 6 4.0805 -1.5344 2.4067 8 8 3.3009 -1.9897 3.2096 9 8 5.4003 -1.7078 2.5798 10 6 4.0231 -1.4729 -0.0725 11 7 3.5093 -0.7419 -1.2380 12 6 4.0373 -1.3057 -2.4876 13 6 3.3132 -2.6163 -2.8018 14 6 3.5165 -3.7268 -1.8034 15 1 2.6828 -4.0863 -1.2185 16 6 4.7679 -4.2798 -1.6326 17 7 4.9744 -5.1557 -0.6736 18 14 6.1699 -3.7850 -2.7635 19 1 6.8329 -2.5692 -2.2272 20 1 7.1561 -4.8923 -2.8430 21 1 5.6352 -3.4998 -4.1192 22 6 1.9480 -2.5227 -3.4860 23 6 3.1676 -3.0076 -4.2737 24 6 2.0410 -0.7233 -1.2481 25 1 -0.3633 0.5122 0.8909 26 1 -0.3634 0.5153 -0.8891 27 1 -0.3633 -1.0277 -0.0018 28 1 1.6454 -1.7392 1.2689 29 1 1.7157 -0.1881 2.1403 30 1 5.6790 -2.2039 3.3616 31 1 3.6376 -2.4924 -0.0844 32 1 5.1122 -1.4959 -0.1094 33 1 5.1045 -1.4977 -2.3771 34 1 3.8777 -0.5983 -3.3012 35 1 5.8695 -5.4902 -0.5068 36 1 1.1968 -3.2642 -3.2141 37 1 1.5658 -1.5274 -3.7127 38 1 3.5873 -2.3311 -5.0182 39 1 3.2192 -4.0682 -4.5200 40 1 1.6905 -0.2021 -2.1390 41 1 1.6649 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398689525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:50 Heat of formation + Delta-G solvation = -72.583640 kcal Electronic energy + Delta-G solvation = -22316.212502 eV Core-core repulsion = 19196.361360 eV Total energy + Delta-G solvation = -3119.851142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19111 -38.79249 -36.51723 -35.65951 -33.16784 -32.31088 -31.69265 -26.94846 -25.99968 -25.50149 -24.26266 -21.70144 -21.48360 -20.47247 -19.27999 -18.77867 -17.60033 -16.55431 -15.92162 -15.55369 -15.04792 -14.72446 -14.26598 -13.92357 -13.80798 -13.44591 -13.23178 -12.90911 -12.68571 -12.15756 -12.08579 -11.87577 -11.47666 -11.40658 -11.14771 -11.03551 -10.76947 -10.60940 -10.45162 -10.35209 -10.25857 -10.18064 -9.88616 -9.81403 -9.54402 -8.99445 -8.73461 -8.49005 -7.45421 -6.17530 -4.14986 2.61809 3.22725 3.34813 3.41154 3.45576 4.35711 4.58096 4.96835 5.03146 5.16925 5.20617 5.27794 5.47235 5.72313 5.74791 5.83309 5.90667 5.94320 5.97689 6.03658 6.07903 6.15225 6.22741 6.29076 6.39070 6.42664 6.50878 6.54203 6.59424 6.67691 6.74298 6.82886 6.89512 7.02473 7.12376 7.25207 7.66067 7.81019 7.86007 8.29726 8.42184 8.81062 9.43470 10.91869 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.010078 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.284321 B = 2777.734838 C = 3941.688878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.096 4.096 5 C -0.077 4.077 6 H 0.103 0.897 7 C 0.492 3.508 8 O -0.523 6.523 9 O -0.513 6.513 10 C 0.050 3.950 11 N -0.524 5.524 12 C 0.085 3.915 13 C -0.031 4.031 14 C -0.484 4.484 15 H 0.075 0.925 16 C 0.083 3.917 17 N -0.891 5.891 18 Si 0.866 3.134 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.251 1.251 22 C -0.181 4.181 23 C -0.195 4.195 24 C 0.057 3.943 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.404 0.596 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 10.046 1.265 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.090 0.910 4 C -0.133 4.133 5 C -0.097 4.097 6 H 0.121 0.879 7 C 0.334 3.666 8 O -0.411 6.411 9 O -0.323 6.323 10 C -0.078 4.078 11 N -0.246 5.246 12 C -0.043 4.043 13 C -0.034 4.034 14 C -0.521 4.521 15 H 0.092 0.908 16 C -0.121 4.121 17 N -0.527 5.527 18 Si 0.694 3.306 19 H -0.201 1.201 20 H -0.221 1.221 21 H -0.175 1.175 22 C -0.218 4.218 23 C -0.233 4.233 24 C -0.071 4.071 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.802 10.456 1.224 10.894 hybrid contribution 0.863 -1.057 -0.083 1.367 sum -1.939 9.399 1.141 9.665 Atomic orbital electron populations 1.21747 0.95170 1.01954 1.01150 1.21169 0.94958 0.99772 0.94821 0.90983 1.21501 0.92090 1.02060 0.97671 1.21129 0.97064 0.99790 0.91690 0.87897 1.23534 0.79658 0.76898 0.86486 1.90661 1.57309 1.47608 1.45571 1.84573 1.26595 1.71018 1.50155 1.22383 1.00063 0.99140 0.86185 1.62319 1.07640 1.52278 1.02346 1.21874 0.98684 0.93206 0.90546 1.20173 0.95472 0.95985 0.91727 1.20169 0.96253 1.15799 1.19884 0.90753 1.24883 0.98507 0.93974 0.94725 1.69874 1.22104 1.30429 1.30308 0.87057 0.82158 0.77832 0.83567 1.20087 1.22118 1.17484 1.22837 0.92013 1.00122 1.06814 1.23027 1.03303 1.00305 0.96695 1.22205 0.88566 1.00136 0.96185 0.92944 0.92760 0.92534 0.90877 0.91895 0.73840 0.87864 0.91094 0.91643 0.92659 0.92441 0.90097 0.90939 0.91454 0.89928 0.91808 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 37.16 0.34 -1.42 16 2 C -0.09 -1.28 2.88 -90.54 -0.26 -1.54 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.10 -1.53 3.87 -26.61 -0.10 -1.63 16 5 C -0.08 -1.31 2.79 -91.69 -0.26 -1.57 16 6 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 7 C 0.49 8.81 7.63 36.01 0.27 9.09 16 8 O -0.52 -10.49 16.73 -18.75 -0.31 -10.80 16 9 O -0.51 -8.11 13.34 -39.28 -0.52 -8.63 16 10 C 0.05 1.00 4.04 -3.83 -0.02 0.98 16 11 N -0.52 -9.78 4.86 -234.67 -1.14 -10.93 16 12 C 0.08 1.70 5.17 -3.82 -0.02 1.68 16 13 C -0.03 -0.68 0.11 -155.66 -0.02 -0.69 16 14 C -0.48 -12.39 6.04 -34.44 -0.21 -12.60 16 15 H 0.07 2.14 8.05 -52.49 -0.42 1.72 16 16 C 0.08 2.20 5.17 -17.82 -0.09 2.11 16 17 N -0.89 -25.53 13.95 55.43 0.77 -24.76 16 18 Si 0.87 20.54 25.13 -169.99 -4.27 16.27 16 19 H -0.27 -6.38 6.73 56.52 0.38 -6.00 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.25 -5.69 5.86 56.52 0.33 -5.36 16 22 C -0.18 -3.46 7.81 -26.70 -0.21 -3.67 16 23 C -0.19 -3.96 8.07 -26.70 -0.22 -4.18 16 24 C 0.06 0.96 3.32 -3.84 -0.01 0.95 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.40 4.57 9.10 45.56 0.41 4.98 16 31 H 0.10 2.47 5.07 -51.93 -0.26 2.20 16 32 H 0.07 1.51 7.95 -51.93 -0.41 1.10 16 33 H 0.07 1.41 4.65 -51.93 -0.24 1.17 16 34 H 0.06 1.01 8.10 -51.94 -0.42 0.59 16 35 H 0.27 7.28 8.32 -40.82 -0.34 6.94 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.23 7.05 -51.93 -0.37 0.87 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.77 8.14 -51.92 -0.42 1.34 16 40 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 41 H 0.06 1.13 6.00 -51.93 -0.31 0.82 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -29.19 312.59 -7.40 -36.60 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.84 Total: 10.01 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.79 Total: -12.47 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.37 Total: -35.68 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.84 Total: -19.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.27 Total: 16.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.19 -7.40 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398689525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.986 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds