Wall clock time and date at job start Mon Mar 30 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99732 * 2 1 4 4 C 1.52998 * 109.47007 * 125.00114 * 3 2 1 5 5 O 1.42904 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99809 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47628 * 30.00475 * 6 5 4 8 8 C 1.52999 * 109.47028 * 270.00001 * 6 5 4 9 9 C 1.50699 * 109.46739 * 150.00353 * 6 5 4 10 10 O 1.21279 * 120.00425 * 5.00237 * 9 6 5 11 11 N 1.34783 * 120.00149 * 184.99745 * 9 6 5 12 12 C 1.46499 * 120.00077 * 179.97438 * 11 9 6 13 13 C 1.52999 * 109.46973 * 178.27581 * 12 11 9 14 14 C 1.50699 * 115.54891 * 65.14492 * 13 12 11 15 15 H 1.08002 * 119.99890 * 265.40413 * 14 13 12 16 16 C 1.37872 * 120.00078 * 85.40499 * 14 13 12 17 17 N 1.31518 * 119.99958 * 353.55513 * 16 14 13 18 18 Si 1.86798 * 120.00151 * 173.55345 * 16 14 13 19 19 H 1.48504 * 109.47286 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47446 * 119.99979 * 18 16 14 21 21 H 1.48503 * 109.47308 * 240.00222 * 18 16 14 22 22 C 1.53004 * 117.49786 * 279.47394 * 13 12 11 23 23 C 1.52999 * 117.49986 * 210.81320 * 13 12 11 24 24 H 1.07997 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99783 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00327 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47437 * 5.00019 * 3 2 1 28 28 H 1.09002 * 109.47160 * 244.99919 * 3 2 1 29 29 H 1.09005 * 109.47466 * 60.00197 * 4 3 2 30 30 H 1.09003 * 109.47443 * 299.99600 * 4 3 2 31 31 H 1.08993 * 109.47782 * 300.00172 * 8 6 5 32 32 H 1.09002 * 109.46974 * 60.00948 * 8 6 5 33 33 H 1.09008 * 109.46838 * 180.02562 * 8 6 5 34 34 H 0.97002 * 119.99400 * 0.02562 * 11 9 6 35 35 H 1.08996 * 109.47418 * 298.27749 * 12 11 9 36 36 H 1.09000 * 109.47059 * 58.28172 * 12 11 9 37 37 H 0.97004 * 120.00027 * 185.05964 * 17 16 14 38 38 H 1.08997 * 117.50164 * 0.02562 * 22 13 12 39 39 H 1.09010 * 117.49476 * 145.02212 * 22 13 12 40 40 H 1.08998 * 117.50196 * 214.98107 * 23 13 12 41 41 H 1.08995 * 117.49890 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7499 2.5705 1.1813 6 6 4.6886 2.6997 2.2510 7 1 5.0649 1.7142 2.5253 8 6 4.0001 3.3373 3.4594 9 6 5.8365 3.5706 1.8094 10 8 5.8066 4.1085 0.7229 11 7 6.8964 3.7517 2.6221 12 6 8.0125 4.5979 2.1926 13 6 9.0567 4.6700 3.3086 14 6 9.7456 3.3710 3.6389 15 1 9.3724 2.7503 4.4402 16 6 10.8523 2.9750 2.9184 17 7 11.2314 3.6636 1.8640 18 14 11.8134 1.4604 3.4397 19 1 11.1866 0.8683 4.6488 20 1 11.8035 0.4644 2.3383 21 1 13.2145 1.8447 3.7470 22 6 8.7943 5.6432 4.4597 23 6 9.8786 5.9551 3.4251 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5067 1.0920 30 1 2.4773 1.2357 2.1130 31 1 3.6239 4.3228 3.1852 32 1 3.1699 2.7073 3.7788 33 1 4.7163 3.4362 4.2752 34 1 6.9204 3.3212 3.4910 35 1 8.4665 4.1736 1.2971 36 1 7.6451 5.6004 1.9736 37 1 11.9645 3.3449 1.3144 38 1 7.8777 6.2318 4.4221 39 1 9.1205 5.3441 5.4559 40 1 10.9176 5.8612 3.7411 41 1 9.6758 6.7491 2.7065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431094712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:40 Heat of formation + Delta-G solvation = -52.261204 kcal Electronic energy + Delta-G solvation = -20178.560691 eV Core-core repulsion = 17059.590796 eV Total energy + Delta-G solvation = -3118.969896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49338 -37.78197 -36.59103 -35.18522 -33.38938 -32.00909 -31.42486 -29.08401 -26.49168 -25.35261 -23.86350 -22.78839 -21.21092 -20.15937 -19.65446 -19.27018 -17.07998 -16.83749 -16.10639 -15.68784 -15.28899 -14.84185 -14.73122 -14.38867 -14.08051 -13.56809 -13.43588 -12.99225 -12.85938 -12.55267 -12.34631 -12.17649 -11.73759 -11.61582 -11.33564 -11.21936 -11.09344 -11.04390 -10.93341 -10.54431 -10.28798 -9.83271 -9.65261 -9.58017 -9.07735 -8.98405 -8.52834 -8.28719 -8.09037 -6.10363 -4.19427 1.98360 3.18619 3.22777 3.26890 3.32091 3.33662 4.16085 4.33090 4.73783 4.86465 4.90788 5.04769 5.11745 5.13588 5.18018 5.25386 5.30722 5.38559 5.57955 5.62132 5.71680 5.79074 5.89954 6.01676 6.11223 6.31845 6.36447 6.45173 6.49647 6.55466 6.67428 6.86492 7.07584 7.11805 7.29807 7.41582 7.47276 7.78842 8.28444 8.31252 8.81386 8.88514 9.47687 10.97463 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.003936 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.524093 B = 7111.981421 C = 7763.986290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.071 3.929 7 H 0.084 0.916 8 C -0.168 4.168 9 C 0.505 3.495 10 O -0.537 6.537 11 N -0.701 5.701 12 C 0.165 3.835 13 C 0.027 3.973 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.210 4.210 23 C -0.148 4.148 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -5.244 2.005 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.168 4.168 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.010 3.990 7 H 0.102 0.898 8 C -0.226 4.226 9 C 0.289 3.711 10 O -0.414 6.414 11 N -0.351 5.351 12 C 0.042 3.958 13 C 0.027 3.973 14 C -0.539 4.539 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.651 -4.652 0.954 16.356 hybrid contribution 0.726 -1.299 0.784 1.682 sum -14.925 -5.951 1.738 16.162 Atomic orbital electron populations 1.23879 0.95873 1.01937 1.01210 1.22845 0.96007 0.98149 0.99817 1.20647 0.97911 0.95657 0.98874 1.22505 0.94106 0.86606 0.98118 1.88025 1.53825 1.36806 1.48924 1.21926 0.89602 0.99381 0.88129 0.89830 1.22213 1.01371 1.02230 0.96789 1.20210 0.83271 0.82396 0.85267 1.90674 1.79920 1.49160 1.21636 1.45907 1.18722 1.50390 1.20118 1.21002 0.84579 0.91421 0.98818 1.19035 0.95229 0.91181 0.91905 1.20380 1.11305 1.04175 1.18069 0.92119 1.24996 0.96627 0.96542 0.94906 1.69988 1.28190 1.37860 1.14877 0.86577 0.80139 0.82843 0.78674 1.19708 1.21028 1.20931 1.23029 0.99513 1.06677 0.95563 1.22493 0.96073 0.99647 1.00369 0.88452 0.88410 0.87173 0.90599 0.89816 0.93097 0.93231 0.91249 0.91705 0.90677 0.76665 0.90931 0.94414 0.92852 0.91609 0.90344 0.89802 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.29 9.52 -36.02 -0.34 -1.63 16 3 C -0.09 -0.97 6.03 -27.88 -0.17 -1.14 16 4 C 0.06 0.73 5.73 37.16 0.21 0.94 16 5 O -0.36 -5.58 9.53 -55.09 -0.52 -6.11 16 6 C 0.07 1.05 3.13 -27.88 -0.09 0.96 16 7 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 8 C -0.17 -1.97 9.48 37.16 0.35 -1.62 16 9 C 0.50 9.79 7.18 -10.98 -0.08 9.71 16 10 O -0.54 -12.78 16.51 -14.30 -0.24 -13.01 16 11 N -0.70 -13.55 5.44 -60.30 -0.33 -13.88 16 12 C 0.16 3.74 5.50 -4.04 -0.02 3.72 16 13 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 14 C -0.50 -12.72 8.63 -34.44 -0.30 -13.02 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 17 N -0.87 -24.12 12.91 55.43 0.72 -23.40 16 18 Si 0.89 20.32 29.55 -169.99 -5.02 15.30 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.21 -4.30 9.96 -26.69 -0.27 -4.56 16 23 C -0.15 -3.35 9.42 -26.69 -0.25 -3.60 16 24 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 25 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.07 0.80 7.92 -51.92 -0.41 0.39 16 34 H 0.40 6.87 8.15 -40.82 -0.33 6.54 16 35 H 0.07 1.91 8.14 -51.93 -0.42 1.48 16 36 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -30.45 351.57 -7.91 -38.36 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.97 Total: 6.49 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.84 Total: -9.05 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.39 Total: -37.28 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.76 Total: -19.12 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.45 -7.91 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431094712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.897 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds