Wall clock time and date at job start Mon Mar 30 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99732 * 2 1 4 4 C 1.52998 * 109.47007 * 125.00114 * 3 2 1 5 5 O 1.42904 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99809 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47628 * 30.00475 * 6 5 4 8 8 C 1.52999 * 109.47028 * 270.00001 * 6 5 4 9 9 C 1.50699 * 109.46739 * 150.00353 * 6 5 4 10 10 O 1.21279 * 120.00425 * 5.00237 * 9 6 5 11 11 N 1.34783 * 120.00149 * 184.99745 * 9 6 5 12 12 C 1.46499 * 120.00077 * 179.97438 * 11 9 6 13 13 C 1.52999 * 109.46973 * 178.27581 * 12 11 9 14 14 C 1.50699 * 115.54891 * 65.14492 * 13 12 11 15 15 H 1.08002 * 119.99890 * 265.40413 * 14 13 12 16 16 C 1.37872 * 120.00078 * 85.40499 * 14 13 12 17 17 N 1.31518 * 119.99958 * 353.55513 * 16 14 13 18 18 Si 1.86798 * 120.00151 * 173.55345 * 16 14 13 19 19 H 1.48504 * 109.47286 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47446 * 119.99979 * 18 16 14 21 21 H 1.48503 * 109.47308 * 240.00222 * 18 16 14 22 22 C 1.53004 * 117.49786 * 279.47394 * 13 12 11 23 23 C 1.52999 * 117.49986 * 210.81320 * 13 12 11 24 24 H 1.07997 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99783 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00327 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47437 * 5.00019 * 3 2 1 28 28 H 1.09002 * 109.47160 * 244.99919 * 3 2 1 29 29 H 1.09005 * 109.47466 * 60.00197 * 4 3 2 30 30 H 1.09003 * 109.47443 * 299.99600 * 4 3 2 31 31 H 1.08993 * 109.47782 * 300.00172 * 8 6 5 32 32 H 1.09002 * 109.46974 * 60.00948 * 8 6 5 33 33 H 1.09008 * 109.46838 * 180.02562 * 8 6 5 34 34 H 0.97002 * 119.99400 * 0.02562 * 11 9 6 35 35 H 1.08996 * 109.47418 * 298.27749 * 12 11 9 36 36 H 1.09000 * 109.47059 * 58.28172 * 12 11 9 37 37 H 0.97004 * 120.00027 * 185.05964 * 17 16 14 38 38 H 1.08997 * 117.50164 * 0.02562 * 22 13 12 39 39 H 1.09010 * 117.49476 * 145.02212 * 22 13 12 40 40 H 1.08998 * 117.50196 * 214.98107 * 23 13 12 41 41 H 1.08995 * 117.49890 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7499 2.5705 1.1813 6 6 4.6886 2.6997 2.2510 7 1 5.0649 1.7142 2.5253 8 6 4.0001 3.3373 3.4594 9 6 5.8365 3.5706 1.8094 10 8 5.8066 4.1085 0.7229 11 7 6.8964 3.7517 2.6221 12 6 8.0125 4.5979 2.1926 13 6 9.0567 4.6700 3.3086 14 6 9.7456 3.3710 3.6389 15 1 9.3724 2.7503 4.4402 16 6 10.8523 2.9750 2.9184 17 7 11.2314 3.6636 1.8640 18 14 11.8134 1.4604 3.4397 19 1 11.1866 0.8683 4.6488 20 1 11.8035 0.4644 2.3383 21 1 13.2145 1.8447 3.7470 22 6 8.7943 5.6432 4.4597 23 6 9.8786 5.9551 3.4251 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5067 1.0920 30 1 2.4773 1.2357 2.1130 31 1 3.6239 4.3228 3.1852 32 1 3.1699 2.7073 3.7788 33 1 4.7163 3.4362 4.2752 34 1 6.9204 3.3212 3.4910 35 1 8.4665 4.1736 1.2971 36 1 7.6451 5.6004 1.9736 37 1 11.9645 3.3449 1.3144 38 1 7.8777 6.2318 4.4221 39 1 9.1205 5.3441 5.4559 40 1 10.9176 5.8612 3.7411 41 1 9.6758 6.7491 2.7065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431094712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:40 Heat of formation + Delta-G solvation = -70.241927 kcal Electronic energy + Delta-G solvation = -20179.340394 eV Core-core repulsion = 17059.590796 eV Total energy + Delta-G solvation = -3119.749598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95078 -39.07762 -38.27478 -35.97608 -35.05587 -33.97397 -32.50826 -29.91966 -28.20054 -27.21956 -25.02774 -23.75229 -22.94989 -21.40183 -21.13250 -20.56952 -18.60642 -18.03062 -17.67933 -16.88761 -16.59764 -16.42534 -16.14153 -15.84444 -15.53787 -14.95941 -14.57528 -14.32841 -14.19073 -13.72800 -13.50687 -13.40315 -13.23101 -13.15717 -12.92785 -12.83844 -12.32050 -12.17517 -12.09516 -12.03044 -11.96719 -11.47931 -10.99317 -10.85218 -10.53749 -10.44404 -10.25592 -10.02950 -9.85381 -8.09607 -6.23200 1.34832 1.41901 1.45791 1.54979 1.66472 2.00336 2.42939 2.96627 3.18889 3.48763 3.78068 3.95866 3.98143 4.12743 4.16183 4.25168 4.27510 4.46645 4.47537 4.55555 4.64981 4.70827 4.73799 4.81737 4.90039 5.00230 5.02899 5.05292 5.12245 5.21707 5.27668 5.56298 5.59733 5.66747 5.73774 5.78471 5.86276 6.14677 6.36697 6.75426 6.85575 7.35710 7.46899 8.98152 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.003936 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.524093 B = 7111.981421 C = 7763.986290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C -0.092 4.092 4 C 0.059 3.941 5 O -0.390 6.390 6 C 0.077 3.923 7 H 0.109 0.891 8 C -0.161 4.161 9 C 0.499 3.501 10 O -0.589 6.589 11 N -0.692 5.692 12 C 0.180 3.820 13 C 0.006 3.994 14 C -0.504 4.504 15 H 0.068 0.932 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.951 3.049 19 H -0.258 1.258 20 H -0.289 1.289 21 H -0.287 1.287 22 C -0.173 4.173 23 C -0.162 4.162 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.412 0.588 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 -6.706 4.176 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C -0.130 4.130 4 C -0.017 4.017 5 O -0.309 6.309 6 C 0.017 3.983 7 H 0.127 0.873 8 C -0.218 4.218 9 C 0.285 3.715 10 O -0.470 6.470 11 N -0.343 5.343 12 C 0.055 3.945 13 C 0.005 3.995 14 C -0.542 4.542 15 H 0.086 0.914 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.777 3.223 19 H -0.182 1.182 20 H -0.215 1.215 21 H -0.213 1.213 22 C -0.210 4.210 23 C -0.200 4.200 24 H 0.117 0.883 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.249 0.751 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.410 -6.137 3.176 18.732 hybrid contribution 1.206 -0.827 0.075 1.465 sum -16.204 -6.965 3.251 17.934 Atomic orbital electron populations 1.24077 0.95612 1.02880 0.99383 1.22803 0.96325 0.97489 1.01426 1.20626 0.97694 0.96794 0.97847 1.22740 0.94258 0.85158 0.99566 1.87995 1.54207 1.38955 1.49706 1.21950 0.88158 0.99533 0.88707 0.87295 1.22203 1.02353 1.01824 0.95468 1.21205 0.84032 0.81977 0.84263 1.90645 1.81030 1.51379 1.23918 1.45760 1.17888 1.49927 1.20719 1.20565 0.85387 0.91375 0.97126 1.19047 0.95843 0.90987 0.93643 1.20726 1.11017 1.04863 1.17565 0.91391 1.25740 0.97807 0.99278 0.94966 1.70122 1.28836 1.39575 1.16160 0.85619 0.78569 0.79623 0.78488 1.18165 1.21493 1.21279 1.23022 0.99119 1.04133 0.94772 1.22436 0.95723 0.99795 1.02050 0.88254 0.86742 0.86236 0.90889 0.91517 0.92517 0.90926 0.92552 0.88791 0.89259 0.75112 0.95456 0.94784 0.93282 0.89233 0.89261 0.91774 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.16 -2.51 9.52 25.65 0.24 -2.26 16 3 C -0.09 -1.84 6.03 29.85 0.18 -1.66 16 4 C 0.06 1.25 5.73 71.98 0.41 1.66 16 5 O -0.39 -11.79 9.53 -129.99 -1.24 -13.03 16 6 C 0.08 2.14 3.13 29.85 0.09 2.23 16 7 H 0.11 2.44 7.79 -2.39 -0.02 2.42 16 8 C -0.16 -3.29 9.48 71.98 0.68 -2.61 16 9 C 0.50 19.26 7.18 87.66 0.63 19.89 16 10 O -0.59 -28.87 16.51 15.97 0.26 -28.61 16 11 N -0.69 -26.34 5.44 -463.06 -2.52 -28.86 16 12 C 0.18 8.31 5.50 86.38 0.48 8.78 16 13 C 0.01 0.25 1.38 -52.93 -0.07 0.18 16 14 C -0.50 -25.19 8.63 25.60 0.22 -24.97 16 15 H 0.07 3.23 7.82 -2.91 -0.02 3.21 16 16 C 0.02 1.19 5.39 84.65 0.46 1.65 16 17 N -0.91 -51.44 12.91 21.45 0.28 -51.17 16 18 Si 0.95 41.59 29.55 68.60 2.03 43.62 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.17 -6.69 9.96 30.62 0.30 -6.39 16 23 C -0.16 -7.32 9.42 30.62 0.29 -7.03 16 24 H 0.10 1.25 7.84 -2.91 -0.02 1.23 16 25 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 26 H 0.12 1.60 8.06 -2.91 -0.02 1.58 16 27 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.12 8.09 -2.38 -0.02 1.10 16 30 H 0.07 1.20 7.87 -2.39 -0.02 1.18 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.40 7.87 -2.39 -0.02 1.38 16 33 H 0.09 1.57 7.92 -2.38 -0.02 1.55 16 34 H 0.41 13.40 8.15 -92.71 -0.76 12.64 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 40 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -67.35 351.57 3.93 -63.42 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.23 Total: 26.59 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.88 Total: -11.96 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.24 Total: -80.02 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.97 Total: -41.64 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -67.35 3.93 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431094712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.825 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds