Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.47768 * 180.02562 * 18 17 16 20 20 O 1.20767 * 119.99559 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00619 * 179.97438 * 19 18 17 22 22 C 1.52999 * 117.50242 * 223.74836 * 21 19 18 23 23 C 1.52996 * 117.50303 * 155.08392 * 21 19 18 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 29 29 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 30 30 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 31 31 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 32 32 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 33 33 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 34 34 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 35 35 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 36 36 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 37 37 H 1.09004 * 115.54432 * 9.41751 * 21 19 18 38 38 H 1.08998 * 117.49462 * 359.97438 * 22 21 19 39 39 H 1.08995 * 117.50198 * 145.01651 * 22 21 19 40 40 H 1.09000 * 117.50396 * 214.98454 * 23 21 19 41 41 H 1.09005 * 117.49617 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 6 5.4943 0.4415 -6.2152 20 8 5.6656 1.5763 -5.8392 21 6 6.1186 -0.0275 -7.5041 22 6 7.5722 0.3689 -7.7703 23 6 6.4407 1.0321 -8.5597 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 0.7376 -2.1442 -1.9996 29 1 2.4629 -2.5817 -1.9866 30 1 1.5295 -2.5968 -0.4711 31 1 3.9016 -1.6021 -3.0168 32 1 2.4483 -1.0887 -3.9070 33 1 3.5409 1.0721 -4.4431 34 1 4.9938 0.5582 -3.5525 35 1 5.2615 -1.3620 -5.0989 36 1 3.8085 -0.8476 -5.9890 37 1 5.7910 -1.0056 -7.8564 38 1 8.0768 0.9693 -7.0134 39 1 8.2008 -0.3482 -8.2981 40 1 6.3254 0.7510 -9.6065 41 1 6.2006 2.0685 -8.3221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448910478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = -61.891572 kcal Electronic energy + Delta-G solvation = -20035.781546 eV Core-core repulsion = 16916.394047 eV Total energy + Delta-G solvation = -3119.387500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08188 -39.01292 -36.41008 -35.39086 -34.06549 -32.77878 -29.94782 -28.48784 -26.04307 -25.22136 -24.87615 -22.78547 -21.97962 -20.46635 -19.45383 -18.19167 -16.88641 -16.51253 -16.14521 -15.84927 -15.38134 -15.15647 -14.69775 -14.59336 -14.03767 -13.50072 -13.05210 -12.72670 -12.45897 -12.38440 -12.11046 -11.90542 -11.71040 -11.60691 -11.48355 -11.13890 -11.01070 -10.97022 -10.84112 -10.82332 -10.65174 -10.58400 -10.23095 -10.14041 -9.69855 -9.15581 -8.83219 -8.39397 -7.53056 -6.04653 -4.12761 1.73877 3.28880 3.34204 3.35341 3.48150 3.52577 3.64263 4.07530 4.42014 4.43962 4.56923 4.73086 4.85457 5.04892 5.06179 5.25202 5.25446 5.28215 5.45506 5.50686 5.58603 5.61293 5.68920 5.75481 5.79151 5.94305 6.05871 6.28447 6.39378 6.53068 6.78837 6.87155 7.10640 7.43724 7.48081 7.58192 7.75127 8.05527 8.23904 8.59592 8.86667 9.13850 9.53694 11.00654 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036871 B = 0.003203 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.221887 B = 8738.459393 C = 8850.723783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.164 4.164 19 C 0.380 3.620 20 O -0.448 6.448 21 C -0.223 4.223 22 C -0.152 4.152 23 C -0.155 4.155 24 H 0.029 0.971 25 H 0.092 0.908 26 H 0.010 0.990 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -7.534 -19.504 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.328 5.328 13 C -0.059 4.059 14 C 0.287 3.713 15 O -0.431 6.431 16 C -0.179 4.179 17 C -0.134 4.134 18 C -0.202 4.202 19 C 0.255 3.745 20 O -0.321 6.321 21 C -0.242 4.242 22 C -0.189 4.189 23 C -0.192 4.192 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.965 -6.190 -19.018 21.178 hybrid contribution 0.164 -0.888 0.841 1.235 sum 7.129 -7.078 -18.177 20.768 Atomic orbital electron populations 1.22076 0.98291 0.99299 1.00730 1.18910 0.90817 0.94569 0.80052 0.91972 1.21292 1.31830 1.12995 0.90382 0.92343 1.24905 0.94970 0.94991 0.98961 1.69876 1.36323 1.22570 1.23827 0.86552 0.79242 0.79529 0.82029 1.21169 1.20259 1.20252 1.48254 1.49235 1.11592 1.23671 1.21580 0.98671 0.83442 1.02250 1.20440 0.79224 0.87233 0.84434 1.90661 1.58265 1.17261 1.76891 1.21686 1.00692 0.99603 0.95877 1.21143 1.00451 0.97780 0.93999 1.22087 1.00614 0.99605 0.97858 1.23834 0.77572 0.88141 0.84930 1.90432 1.52084 1.20800 1.68807 1.22921 1.01152 1.01956 0.98139 1.22946 0.89416 1.03242 1.03276 1.22966 1.02100 0.97992 0.96106 0.95229 0.88909 0.97086 0.92641 0.94032 0.92822 0.90238 0.89498 0.89658 0.90755 0.90674 0.88339 0.88391 0.85762 0.88051 0.87844 0.87950 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.72 2.64 -69.09 -0.18 6.54 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.44 7.99 -34.44 -0.28 -14.72 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.60 -12.91 2.75 -175.26 -0.48 -13.39 16 13 C 0.08 1.40 9.24 59.85 0.55 1.96 16 14 C 0.50 10.52 7.67 -10.99 -0.08 10.43 16 15 O -0.55 -14.16 15.31 5.56 0.09 -14.07 16 16 C -0.14 -1.98 4.25 -27.89 -0.12 -2.10 16 17 C -0.10 -1.37 3.79 -26.73 -0.10 -1.47 16 18 C -0.16 -1.58 5.64 -27.89 -0.16 -1.74 16 19 C 0.38 4.23 6.92 -29.04 -0.20 4.03 16 20 O -0.45 -6.88 16.05 5.99 0.10 -6.79 16 21 C -0.22 -1.78 6.12 -91.78 -0.56 -2.34 16 22 C -0.15 -1.13 10.15 -26.69 -0.27 -1.40 16 23 C -0.15 -1.18 10.05 -26.69 -0.27 -1.45 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.70 6.44 -51.92 -0.33 0.37 16 30 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 31 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 32 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.07 1.21 8.06 -51.93 -0.42 0.80 16 34 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -33.85 339.41 -7.73 -41.58 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.72 Total: 0.07 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.43 Total: -3.81 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.15 Total: -38.33 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.18 Total: -20.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.85 -7.73 -41.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448910478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds