Wall clock time and date at job start Mon Mar 30 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47543 * 2 1 4 4 C 1.50702 * 109.46989 * 239.99331 * 2 1 3 5 5 H 1.07997 * 120.00285 * 239.99812 * 4 2 1 6 6 C 1.37876 * 119.99489 * 60.00739 * 4 2 1 7 7 N 1.31517 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47293 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47001 * 119.99673 * 8 6 4 11 11 H 1.48502 * 109.47114 * 239.99884 * 8 6 4 12 12 N 1.46505 * 109.46812 * 119.99914 * 2 1 3 13 13 C 1.46504 * 120.00149 * 60.00086 * 12 2 1 14 14 C 1.34777 * 120.00115 * 239.99682 * 12 2 1 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 16 20 20 O 1.20766 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.00152 * 179.97438 * 19 18 17 22 22 C 1.52994 * 117.50183 * 223.62532 * 21 19 18 23 23 C 1.52995 * 117.49959 * 154.99792 * 21 19 18 24 24 H 1.09004 * 109.47151 * 300.00253 * 1 2 3 25 25 H 1.08996 * 109.46816 * 59.99766 * 1 2 3 26 26 H 1.08994 * 109.47543 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99944 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.46784 * 269.99859 * 13 12 2 29 29 H 1.09003 * 109.47146 * 29.99481 * 13 12 2 30 30 H 1.08994 * 109.47096 * 150.00065 * 13 12 2 31 31 H 1.09002 * 109.47120 * 59.99760 * 16 14 12 32 32 H 1.08998 * 109.46862 * 300.00562 * 16 14 12 33 33 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 34 34 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 35 35 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 36 36 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 37 37 H 1.09000 * 115.54645 * 9.33230 * 21 19 18 38 38 H 1.08999 * 117.49997 * 359.97438 * 22 21 19 39 39 H 1.08994 * 117.49912 * 145.02147 * 22 21 19 40 40 H 1.08999 * 117.50105 * 214.97829 * 23 21 19 41 41 H 1.09001 * 117.49792 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1198 -4.0079 9 1 3.1482 -2.2859 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2959 -0.7462 3.3136 17 6 4.1453 0.2156 4.1468 18 6 4.6562 -0.5060 5.3955 19 6 5.4934 0.4412 6.2158 20 8 5.6634 1.5765 5.8407 21 6 6.1175 -0.0278 7.5048 22 6 6.0409 0.9118 8.7098 23 6 7.3732 0.7006 7.9879 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7083 1.1608 -3.4843 28 1 0.7375 -2.1443 1.9994 29 1 1.5293 -2.5969 0.4709 30 1 2.4627 -2.5819 1.9865 31 1 3.9016 -1.6024 3.0167 32 1 2.4483 -1.0891 3.9069 33 1 3.5393 1.0716 4.4438 34 1 4.9929 0.5589 3.5536 35 1 3.8089 -0.8496 5.9888 36 1 5.2623 -1.3617 5.0982 37 1 6.0519 -1.0989 7.6964 38 1 5.5394 1.8695 8.5702 39 1 5.9247 0.4590 9.6945 40 1 8.1335 0.1089 8.4977 41 1 7.7482 1.5188 7.3731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448910481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:33 Heat of formation + Delta-G solvation = -83.591046 kcal Electronic energy + Delta-G solvation = -20036.080275 eV Core-core repulsion = 16915.751816 eV Total energy + Delta-G solvation = -3120.328459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03208 -40.58760 -37.26679 -37.02977 -35.29475 -34.70419 -31.67943 -29.74779 -27.49710 -27.32005 -25.92672 -23.36011 -23.29574 -21.93363 -20.29415 -19.74901 -18.53060 -17.81853 -17.61452 -17.03248 -16.99717 -16.21532 -16.00729 -15.87241 -15.27578 -14.84457 -14.52388 -14.20098 -13.83190 -13.67892 -13.55257 -13.21565 -12.97016 -12.82763 -12.79634 -12.66448 -12.56600 -12.45308 -12.28638 -12.19348 -12.10537 -11.70577 -11.54057 -11.43239 -11.18290 -10.71776 -10.54502 -10.38251 -9.29008 -8.15464 -6.32535 0.92997 1.39670 1.41566 1.53016 1.87289 2.33228 2.51576 2.93164 3.00051 3.12342 3.72785 3.85247 3.98174 4.06637 4.09900 4.15496 4.25368 4.47464 4.65994 4.67149 4.72022 4.72844 4.79189 4.81632 4.85515 4.89809 5.00124 5.06399 5.10472 5.12196 5.18818 5.19763 5.39290 5.47733 5.61953 5.68199 6.05315 6.16475 6.64012 6.76802 6.89186 7.33281 7.53807 8.89269 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.003193 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.851868 B = 8765.862791 C = 8870.965108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.258 3.742 3 H 0.001 0.999 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.604 5.604 13 C 0.079 3.921 14 C 0.483 3.517 15 O -0.616 6.616 16 C -0.120 4.120 17 C -0.093 4.093 18 C -0.154 4.154 19 C 0.374 3.626 20 O -0.508 6.508 21 C -0.220 4.220 22 C -0.150 4.150 23 C -0.161 4.161 24 H 0.017 0.983 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -11.683 21.628 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.334 5.334 13 C -0.063 4.063 14 C 0.273 3.727 15 O -0.499 6.499 16 C -0.159 4.159 17 C -0.132 4.132 18 C -0.191 4.191 19 C 0.253 3.747 20 O -0.385 6.385 21 C -0.239 4.239 22 C -0.187 4.187 23 C -0.198 4.198 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.180 0.820 38 H 0.097 0.903 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.068 -10.415 21.182 24.640 hybrid contribution 0.059 0.500 -1.444 1.529 sum 7.128 -9.915 19.739 23.210 Atomic orbital electron populations 1.21849 0.97178 1.00145 0.99720 1.18507 0.91647 0.92074 0.82248 0.98096 1.21634 1.31725 1.13023 0.91107 0.91820 1.25812 0.95122 0.95681 1.02262 1.70049 1.37502 1.24076 1.24339 0.85362 0.78222 0.78475 0.78673 1.18566 1.19864 1.21363 1.48304 1.49148 1.13647 1.22336 1.21893 1.01606 0.80206 1.02626 1.21772 0.78141 0.86858 0.85965 1.90636 1.60350 1.20390 1.78507 1.21702 1.02291 0.99376 0.92535 1.21040 0.98677 0.97544 0.95897 1.22113 1.02080 0.99353 0.95516 1.24562 0.76691 0.87437 0.85982 1.90434 1.54367 1.23342 1.70392 1.23022 1.04420 1.02005 0.94427 1.23013 1.00151 0.99516 0.95981 1.23017 0.91310 1.02426 1.03036 0.96375 0.91630 0.93199 0.92700 0.91530 0.91632 0.88331 0.85901 0.85576 0.94160 0.94456 0.84658 0.84824 0.81960 0.90257 0.84918 0.85260 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 2 C 0.26 13.91 2.64 44.24 0.12 14.02 16 3 H 0.00 0.07 6.90 -2.39 -0.02 0.05 16 4 C -0.54 -29.79 7.99 25.60 0.20 -29.59 16 5 H 0.06 3.40 7.33 -2.91 -0.02 3.37 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.65 11.32 21.45 0.24 -54.40 16 8 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 N -0.60 -25.82 2.75 -826.79 -2.28 -28.10 16 13 C 0.08 2.34 9.24 127.77 1.18 3.52 16 14 C 0.48 20.39 7.67 87.66 0.67 21.06 16 15 O -0.62 -33.61 15.31 -3.05 -0.05 -33.65 16 16 C -0.12 -3.06 4.25 29.85 0.13 -2.94 16 17 C -0.09 -2.61 3.79 30.59 0.12 -2.50 16 18 C -0.15 -2.43 5.64 29.85 0.17 -2.26 16 19 C 0.37 7.88 6.92 29.10 0.20 8.08 16 20 O -0.51 -16.47 16.06 -1.47 -0.02 -16.49 16 21 C -0.22 -2.88 6.13 -11.54 -0.07 -2.95 16 22 C -0.15 -1.92 10.14 30.59 0.31 -1.61 16 23 C -0.16 -2.23 10.05 30.59 0.31 -1.92 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.15 7.02 -2.39 -0.02 2.13 16 30 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 31 H 0.12 2.34 7.40 -2.39 -0.02 2.32 16 32 H 0.13 2.28 8.11 -2.39 -0.02 2.26 16 33 H 0.04 1.37 8.06 -2.39 -0.02 1.35 16 34 H 0.04 1.30 8.06 -2.39 -0.02 1.28 16 35 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.13 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.49 7.89 -2.39 -0.02 1.47 16 Total: -1.00 -83.00 339.40 5.35 -77.65 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.00 Total: 11.15 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.43 Total: -1.90 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.03 Total: -82.50 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.07 Total: -50.14 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -83.00 5.35 -77.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448910481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.941 kcal (2) G-P(sol) polarization free energy of solvation -82.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds