Wall clock time and date at job start Mon Mar 30 2020 00:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42901 * 113.99914 * 2 1 4 4 C 1.53003 * 109.46751 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47145 * 64.79563 * 4 3 2 6 6 C 1.36814 * 119.99994 * 276.15668 * 5 4 3 7 7 H 1.07999 * 120.00209 * 46.05707 * 6 5 4 8 8 C 1.39082 * 120.00053 * 226.06207 * 6 5 4 9 9 N 1.31351 * 119.99944 * 33.22574 * 8 6 5 10 10 Si 1.86798 * 119.99876 * 213.22777 * 8 6 5 11 11 H 1.48497 * 109.47152 * 60.00037 * 10 8 6 12 12 H 1.48503 * 109.47037 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47244 * 299.99440 * 10 8 6 14 14 C 1.34781 * 120.00447 * 96.15236 * 5 4 3 15 15 O 1.21653 * 120.00209 * 185.89636 * 14 5 4 16 16 C 1.46954 * 119.99597 * 5.90051 * 14 5 4 17 17 C 1.31688 * 118.11474 * 244.36583 * 16 14 5 18 18 C 1.50093 * 123.77724 * 180.46178 * 17 16 14 19 19 C 1.53008 * 110.13047 * 342.81016 * 18 17 16 20 20 H 1.09006 * 109.62706 * 290.05448 * 19 18 17 21 21 C 1.53007 * 109.62921 * 169.67217 * 19 18 17 22 22 C 1.53351 * 108.51600 * 49.76713 * 19 18 17 23 23 C 1.50093 * 118.11445 * 64.38521 * 16 14 5 24 24 H 1.08990 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46759 * 300.00233 * 1 2 3 26 26 H 1.09003 * 109.46455 * 60.00271 * 1 2 3 27 27 H 1.09000 * 109.47463 * 59.99719 * 3 2 1 28 28 H 1.09001 * 109.46922 * 299.99706 * 3 2 1 29 29 H 1.08996 * 109.47291 * 304.79393 * 4 3 2 30 30 H 1.09000 * 109.47014 * 184.79304 * 4 3 2 31 31 H 0.96993 * 119.99868 * 184.97158 * 9 8 6 32 32 H 1.08005 * 118.11067 * 0.44678 * 17 16 14 33 33 H 1.08994 * 109.36101 * 222.60580 * 18 17 16 34 34 H 1.08997 * 109.25103 * 102.94069 * 18 17 16 35 35 H 1.09004 * 109.46718 * 60.38321 * 21 19 18 36 36 H 1.08993 * 109.46975 * 180.39006 * 21 19 18 37 37 H 1.08997 * 109.46931 * 300.38973 * 21 19 18 38 38 H 1.09000 * 109.63404 * 51.63587 * 22 19 18 39 39 H 1.09003 * 109.63020 * 172.22377 * 22 19 18 40 40 H 1.09005 * 109.36706 * 283.01019 * 23 16 14 41 41 H 1.09005 * 109.36004 * 42.60570 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9764 0.5594 -1.2487 6 6 3.9770 -0.8034 -1.3687 7 1 3.1203 -1.3746 -1.0427 8 6 5.0808 -1.4534 -1.9104 9 7 6.2874 -0.9724 -1.7149 10 14 4.8475 -3.0102 -2.9159 11 1 3.9914 -2.7156 -4.0930 12 1 6.1697 -3.5042 -3.3774 13 1 4.1960 -4.0482 -2.0773 14 6 4.3813 1.3268 -2.2801 15 8 4.6449 0.8155 -3.3520 16 6 4.5045 2.7812 -2.1097 17 6 3.7109 3.5583 -2.8172 18 6 3.7351 5.0576 -2.7508 19 6 4.4659 5.5170 -1.4874 20 1 3.8628 5.2831 -0.6101 21 6 4.7108 7.0258 -1.5553 22 6 5.8062 4.7767 -1.4037 23 6 5.5278 3.2956 -1.1396 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 1.6887 1.8465 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8511 0.5715 0.8448 30 1 3.9786 2.1768 0.0865 31 1 7.0499 -1.3833 -2.1515 32 1 3.0020 3.0898 -3.4839 33 1 2.7127 5.4351 -2.7343 34 1 4.2504 5.4480 -3.6284 35 1 3.7554 7.5462 -1.6234 36 1 5.2375 7.3491 -0.6575 37 1 5.3138 7.2569 -2.4333 38 1 6.3442 4.8856 -2.3454 39 1 6.4017 5.1884 -0.5888 40 1 5.1550 3.1738 -0.1225 41 1 6.4515 2.7283 -1.2541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457194504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:15 Heat of formation + Delta-G solvation = -68.996142 kcal Electronic energy + Delta-G solvation = -21639.241377 eV Core-core repulsion = 18519.545800 eV Total energy + Delta-G solvation = -3119.695577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27122 -37.63577 -36.91557 -34.12301 -32.64859 -31.58815 -30.46444 -28.79176 -26.93633 -25.87097 -24.35967 -22.95998 -22.17493 -21.11298 -19.59241 -17.79754 -16.63591 -16.12844 -15.81335 -15.15586 -14.67709 -14.42349 -14.26635 -14.15745 -13.87812 -13.58689 -13.40215 -12.78823 -12.48268 -12.31907 -12.12686 -11.91608 -11.71638 -11.66585 -11.30499 -11.27230 -10.92025 -10.76213 -10.57164 -10.40318 -10.37798 -10.23038 -10.09016 -9.97257 -9.15462 -8.50109 -8.40712 -8.00060 -7.14389 -6.12071 -3.71300 2.53689 3.42789 3.49839 3.59781 4.19647 4.38087 4.46285 4.87422 4.88714 4.94395 5.14320 5.32552 5.49504 5.54169 5.57690 5.61730 5.65881 5.67238 5.71738 5.77634 5.83155 5.85921 5.95642 5.97489 5.99101 6.04962 6.11222 6.17428 6.19932 6.34921 6.42178 6.51527 6.60588 6.72377 7.04271 7.41897 7.72236 7.83700 8.44443 9.13250 9.27478 9.72851 10.32465 10.94365 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.007244 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.182417 B = 3864.587810 C = 4884.769812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.052 3.948 4 C 0.095 3.905 5 N -0.432 5.432 6 C -0.344 4.344 7 H 0.089 0.911 8 C 0.086 3.914 9 N -0.836 5.836 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.508 3.492 15 O -0.557 6.557 16 C -0.122 4.122 17 C -0.146 4.146 18 C -0.077 4.077 19 C -0.094 4.094 20 H 0.071 0.929 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.081 4.081 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 12.811 4.519 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.026 4.026 4 C -0.029 4.029 5 N -0.153 5.153 6 C -0.470 4.470 7 H 0.106 0.894 8 C -0.125 4.125 9 N -0.469 5.469 10 Si 0.724 3.276 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.296 3.704 15 O -0.438 6.438 16 C -0.125 4.125 17 C -0.166 4.166 18 C -0.114 4.114 19 C -0.113 4.113 20 H 0.090 0.910 21 C -0.202 4.202 22 C -0.149 4.149 23 C -0.118 4.118 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.392 12.289 4.023 14.009 hybrid contribution -0.264 -0.521 -0.546 0.800 sum -5.656 11.768 3.476 13.511 Atomic orbital electron populations 1.22662 0.83031 1.02038 0.98871 1.88133 1.17793 1.27417 1.95028 1.23090 0.96055 0.84827 0.98648 1.21839 0.90992 0.98806 0.91308 1.43134 1.58399 1.05631 1.08088 1.18983 1.00828 0.80308 1.46844 0.89366 1.25184 0.93792 0.97750 0.95725 1.70052 0.98319 1.42683 1.35860 0.86531 0.77325 0.82157 0.81614 1.19891 1.21597 1.20360 1.18284 0.82278 0.85218 0.84611 1.90624 1.52665 1.74058 1.26462 1.21134 0.97606 0.95184 0.98611 1.22309 0.99858 0.94461 0.99941 1.20446 1.00172 0.92986 0.97776 1.21208 0.97038 0.94599 0.98415 0.91032 1.21820 1.01259 0.95530 1.01609 1.21657 0.96582 0.94918 1.01774 1.20495 0.98518 0.95177 0.97624 0.90232 0.95095 0.94795 0.94174 0.93999 0.90710 0.90242 0.92641 0.87825 0.91434 0.91143 0.92905 0.92805 0.92789 0.91829 0.91819 0.90452 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.22 9.19 -35.23 -0.32 -7.54 16 3 C 0.05 0.93 6.28 37.16 0.23 1.16 16 4 C 0.09 1.93 5.77 -4.04 -0.02 1.91 16 5 N -0.43 -11.12 2.49 -116.21 -0.29 -11.41 16 6 C -0.34 -9.88 8.57 -15.02 -0.13 -10.00 16 7 H 0.09 2.55 6.96 -52.49 -0.37 2.18 16 8 C 0.09 2.52 3.95 -17.44 -0.07 2.45 16 9 N -0.84 -25.17 13.22 55.50 0.73 -24.44 16 10 Si 0.90 23.20 29.66 -169.99 -5.04 18.16 16 11 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.51 13.27 6.22 -12.73 -0.08 13.19 16 15 O -0.56 -17.16 15.86 5.23 0.08 -17.08 16 16 C -0.12 -2.47 4.40 -103.26 -0.45 -2.93 16 17 C -0.15 -2.59 9.50 -36.48 -0.35 -2.94 16 18 C -0.08 -1.01 5.42 -28.17 -0.15 -1.17 16 19 C -0.09 -1.12 2.76 -90.43 -0.25 -1.37 16 20 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 21 C -0.14 -1.38 9.21 37.16 0.34 -1.04 16 22 C -0.11 -1.51 5.30 -26.55 -0.14 -1.65 16 23 C -0.08 -1.40 5.40 -28.18 -0.15 -1.55 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 30 H 0.08 1.42 4.01 -51.93 -0.21 1.21 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 32 H 0.10 1.97 7.95 -52.48 -0.42 1.55 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.90 8.11 -51.93 -0.42 0.47 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.23 5.77 -51.93 -0.30 0.93 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -34.47 330.55 -6.73 -41.20 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.76 Total: -1.49 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.11 Total: -2.37 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.44 Total: -35.85 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.24 Total: -24.62 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.04 Total: 18.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.47 -6.73 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457194504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.798 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds