Wall clock time and date at job start Mon Mar 30 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46922 * 2 1 4 4 C 1.50697 * 109.47133 * 120.00389 * 2 1 3 5 5 H 1.08002 * 119.99806 * 120.00349 * 4 2 1 6 6 C 1.37872 * 120.00238 * 299.99798 * 4 2 1 7 7 N 1.31517 * 119.99776 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00077 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47307 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47374 * 120.00322 * 8 6 4 11 11 H 1.48504 * 109.47013 * 240.00003 * 8 6 4 12 12 N 1.46504 * 109.47031 * 240.00610 * 2 1 3 13 13 C 1.46493 * 119.99765 * 299.99746 * 12 2 1 14 14 C 1.34775 * 119.99768 * 119.99913 * 12 2 1 15 15 O 1.21608 * 120.00553 * 359.97438 * 14 12 2 16 16 C 1.47106 * 119.99582 * 179.97438 * 14 12 2 17 17 C 1.32997 * 120.00135 * 180.02562 * 16 14 12 18 18 C 1.50697 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.53175 * 109.54085 * 120.00210 * 18 17 16 20 20 C 1.53092 * 109.16344 * 176.84900 * 19 18 17 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 1.09005 * 109.47058 * 59.99550 * 1 2 3 25 25 H 1.08997 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46994 * 299.99568 * 1 2 3 27 27 H 0.97003 * 120.00033 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47628 * 270.00054 * 13 12 2 29 29 H 1.09003 * 109.47499 * 30.00597 * 13 12 2 30 30 H 1.09005 * 109.47189 * 149.99840 * 13 12 2 31 31 H 1.07994 * 120.00274 * 359.97438 * 16 14 12 32 32 H 1.08006 * 119.99597 * 0.02562 * 17 16 14 33 33 H 1.08996 * 109.54186 * 359.82575 * 18 17 16 34 34 H 1.09004 * 109.52714 * 56.93920 * 19 18 17 35 35 H 1.09001 * 109.57654 * 296.78651 * 19 18 17 36 36 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 37 37 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 38 38 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 39 39 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 40 40 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 41 41 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1485 -2.2859 3.6035 10 1 3.1474 -0.1861 4.8160 11 1 1.1679 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 6 2.7932 -0.0354 -2.0834 15 8 3.0866 1.1290 -1.8911 16 6 3.2839 -0.7289 -3.2843 17 6 4.0490 -0.0827 -4.1594 18 6 4.5522 -0.7933 -5.3894 19 6 4.0431 -0.0730 -6.6416 20 6 4.6230 -0.7542 -7.8839 21 8 6.0501 -0.7387 -7.8117 22 6 6.5850 -1.4381 -6.6861 23 6 6.0839 -0.7843 -5.3957 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7088 1.1611 3.4845 28 1 2.4157 -2.7376 -0.9719 29 1 0.6904 -2.3001 -0.9849 30 1 1.6237 -2.2850 -2.5004 31 1 3.0237 -1.7631 -3.4548 32 1 4.3102 0.9512 -3.9882 33 1 4.1923 -1.8222 -5.3889 34 1 4.3603 0.9696 -6.6164 35 1 2.9547 -0.1218 -6.6740 36 1 4.2984 -0.2196 -8.7766 37 1 4.2725 -1.7853 -7.9300 38 1 6.2602 -2.4782 -6.7166 39 1 7.6737 -1.3961 -6.7159 40 1 6.4424 0.2438 -5.3453 41 1 6.4550 -1.3420 -4.5359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491792639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:30 Heat of formation + Delta-G solvation = -75.618279 kcal Electronic energy + Delta-G solvation = -20367.683744 eV Core-core repulsion = 17247.701009 eV Total energy + Delta-G solvation = -3119.982734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68827 -38.94140 -35.68041 -35.04670 -32.87086 -31.38219 -31.33251 -29.29712 -26.17431 -25.54363 -25.16752 -23.74901 -22.34205 -20.44638 -19.75308 -18.08637 -16.93531 -16.39377 -16.22891 -15.97087 -15.45509 -14.95462 -14.66282 -14.36165 -14.13018 -14.03210 -13.20717 -12.69850 -12.63952 -12.59679 -12.35911 -12.14968 -11.56946 -11.55742 -11.44062 -11.16064 -11.08646 -11.01813 -10.80444 -10.69333 -10.53181 -10.23516 -10.16528 -9.79899 -9.17865 -9.14646 -8.95119 -8.42390 -7.54808 -6.06547 -4.14458 1.72205 3.26038 3.33920 3.37123 3.63631 3.94508 4.01768 4.39633 4.54637 4.61375 4.62048 4.78476 4.99551 5.06357 5.18326 5.24003 5.32327 5.33806 5.43290 5.50359 5.63196 5.63932 5.78085 5.81298 5.90141 6.04873 6.09599 6.30653 6.55455 6.61924 6.77895 6.84888 6.94236 7.07339 7.46853 7.55191 7.72892 8.03197 8.21000 8.56110 8.85057 9.09187 9.52218 10.98823 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.003543 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.407112 B = 7900.996805 C = 8168.766501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.588 5.588 13 C 0.087 3.913 14 C 0.531 3.469 15 O -0.558 6.558 16 C -0.197 4.197 17 C -0.083 4.083 18 C -0.063 4.063 19 C -0.149 4.149 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.061 3.939 23 C -0.149 4.149 24 H 0.011 0.989 25 H 0.030 0.970 26 H 0.094 0.906 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -6.987 -17.714 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.318 5.318 13 C -0.057 4.057 14 C 0.319 3.681 15 O -0.439 6.439 16 C -0.217 4.217 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.187 4.187 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.015 4.015 23 C -0.187 4.187 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.629 -6.189 -17.556 19.448 hybrid contribution -0.004 -0.776 1.268 1.487 sum 5.625 -6.964 -16.288 18.586 Atomic orbital electron populations 1.22096 0.98227 0.99345 1.00868 1.18955 0.90873 0.94579 0.80017 0.91873 1.21363 1.31671 1.12935 0.90298 0.92252 1.24904 0.94981 0.95003 0.98991 1.69894 1.36475 1.22675 1.23624 0.86432 0.78591 0.79580 0.82735 1.19831 1.20902 1.20931 1.48146 1.48604 1.11596 1.23476 1.21582 1.01516 0.83252 0.99345 1.18478 0.79446 0.86614 0.83542 1.90723 1.58916 1.17040 1.77225 1.22967 1.01932 1.00583 0.96268 1.23519 0.93666 1.00195 0.92880 1.20402 0.95476 0.99324 0.92977 1.22217 1.01360 1.01012 0.94066 1.22590 0.80983 0.99895 0.98067 1.87929 1.20454 1.76028 1.45993 1.22592 0.98916 0.94762 0.85257 1.22218 0.94903 1.02974 0.98594 0.96975 0.95105 0.88766 0.92752 0.93347 0.90918 0.92834 0.86037 0.85670 0.90422 0.90521 0.90460 0.88792 0.93177 0.93163 0.88767 0.90508 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.70 2.64 -69.08 -0.18 6.52 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.42 8.37 -34.44 -0.29 -14.71 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.21 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.59 -12.95 2.75 -176.66 -0.49 -13.43 16 13 C 0.09 1.49 9.39 59.84 0.56 2.05 16 14 C 0.53 11.44 7.63 -12.66 -0.10 11.34 16 15 O -0.56 -14.27 15.55 5.27 0.08 -14.19 16 16 C -0.20 -3.09 8.82 -37.80 -0.33 -3.42 16 17 C -0.08 -1.14 8.36 -36.13 -0.30 -1.44 16 18 C -0.06 -0.65 2.57 -91.59 -0.24 -0.88 16 19 C -0.15 -1.38 5.40 -26.59 -0.14 -1.52 16 20 C 0.06 0.51 6.84 37.20 0.25 0.77 16 21 O -0.39 -3.97 10.77 -35.23 -0.38 -4.35 16 22 C 0.06 0.52 6.84 37.21 0.25 0.78 16 23 C -0.15 -1.42 5.41 -26.59 -0.14 -1.56 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 30 H 0.05 0.72 6.10 -51.93 -0.32 0.40 16 31 H 0.12 1.56 6.04 -52.49 -0.32 1.24 16 32 H 0.13 1.94 7.49 -52.48 -0.39 1.55 16 33 H 0.08 0.72 7.81 -51.93 -0.41 0.32 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -32.19 328.63 -7.19 -39.38 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.55 Total: -0.10 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.42 Total: -3.67 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.14 Total: -38.23 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.30 Total: -18.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.19 -7.19 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491792639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.234 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds