Wall clock time and date at job start Mon Mar 30 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46922 * 2 1 4 4 C 1.50697 * 109.47133 * 120.00389 * 2 1 3 5 5 H 1.08002 * 119.99806 * 120.00349 * 4 2 1 6 6 C 1.37872 * 120.00238 * 299.99798 * 4 2 1 7 7 N 1.31517 * 119.99776 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00077 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47307 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47374 * 120.00322 * 8 6 4 11 11 H 1.48504 * 109.47013 * 240.00003 * 8 6 4 12 12 N 1.46504 * 109.47031 * 240.00610 * 2 1 3 13 13 C 1.46493 * 119.99765 * 299.99746 * 12 2 1 14 14 C 1.34775 * 119.99768 * 119.99913 * 12 2 1 15 15 O 1.21608 * 120.00553 * 359.97438 * 14 12 2 16 16 C 1.47106 * 119.99582 * 179.97438 * 14 12 2 17 17 C 1.32997 * 120.00135 * 180.02562 * 16 14 12 18 18 C 1.50697 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.53175 * 109.54085 * 120.00210 * 18 17 16 20 20 C 1.53092 * 109.16344 * 176.84900 * 19 18 17 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 1.09005 * 109.47058 * 59.99550 * 1 2 3 25 25 H 1.08997 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46994 * 299.99568 * 1 2 3 27 27 H 0.97003 * 120.00033 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47628 * 270.00054 * 13 12 2 29 29 H 1.09003 * 109.47499 * 30.00597 * 13 12 2 30 30 H 1.09005 * 109.47189 * 149.99840 * 13 12 2 31 31 H 1.07994 * 120.00274 * 359.97438 * 16 14 12 32 32 H 1.08006 * 119.99597 * 0.02562 * 17 16 14 33 33 H 1.08996 * 109.54186 * 359.82575 * 18 17 16 34 34 H 1.09004 * 109.52714 * 56.93920 * 19 18 17 35 35 H 1.09001 * 109.57654 * 296.78651 * 19 18 17 36 36 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 37 37 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 38 38 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 39 39 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 40 40 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 41 41 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1485 -2.2859 3.6035 10 1 3.1474 -0.1861 4.8160 11 1 1.1679 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 6 2.7932 -0.0354 -2.0834 15 8 3.0866 1.1290 -1.8911 16 6 3.2839 -0.7289 -3.2843 17 6 4.0490 -0.0827 -4.1594 18 6 4.5522 -0.7933 -5.3894 19 6 4.0431 -0.0730 -6.6416 20 6 4.6230 -0.7542 -7.8839 21 8 6.0501 -0.7387 -7.8117 22 6 6.5850 -1.4381 -6.6861 23 6 6.0839 -0.7843 -5.3957 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7088 1.1611 3.4845 28 1 2.4157 -2.7376 -0.9719 29 1 0.6904 -2.3001 -0.9849 30 1 1.6237 -2.2850 -2.5004 31 1 3.0237 -1.7631 -3.4548 32 1 4.3102 0.9512 -3.9882 33 1 4.1923 -1.8222 -5.3889 34 1 4.3603 0.9696 -6.6164 35 1 2.9547 -0.1218 -6.6740 36 1 4.2984 -0.2196 -8.7766 37 1 4.2725 -1.7853 -7.9300 38 1 6.2602 -2.4782 -6.7166 39 1 7.6737 -1.3961 -6.7159 40 1 6.4424 0.2438 -5.3453 41 1 6.4550 -1.3420 -4.5359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491792639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:30 Heat of formation + Delta-G solvation = -96.167045 kcal Electronic energy + Delta-G solvation = -20368.574805 eV Core-core repulsion = 17247.701009 eV Total energy + Delta-G solvation = -3120.873796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83339 -40.21290 -37.28282 -36.25186 -34.82335 -32.64188 -32.00014 -31.09983 -27.66068 -27.32535 -26.52487 -24.43298 -23.78808 -21.62940 -20.96360 -19.58576 -18.59323 -18.08427 -17.27921 -16.89364 -16.87740 -16.31329 -16.03680 -15.62618 -15.34280 -14.86552 -14.79256 -14.43644 -14.03289 -13.70909 -13.49760 -13.33109 -13.28461 -12.98620 -12.76446 -12.71986 -12.59069 -12.26129 -12.20950 -12.12349 -12.00607 -11.90191 -11.26337 -11.18674 -10.75726 -10.54643 -10.41321 -10.35601 -9.31805 -8.16481 -6.33697 0.43800 1.39548 1.41204 1.52897 2.29425 2.45374 2.50546 3.01966 3.11130 3.54664 3.78766 3.90458 4.03738 4.10011 4.17500 4.35592 4.38788 4.49496 4.57970 4.68033 4.76013 4.78208 4.78622 4.83976 4.86051 4.92016 5.01742 5.04382 5.09400 5.16949 5.24014 5.37082 5.46534 5.51987 5.65367 5.68889 6.03030 6.14105 6.31162 6.74569 6.83610 7.30125 7.47010 8.88180 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.003543 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.407112 B = 7900.996805 C = 8168.766501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.597 5.597 13 C 0.082 3.918 14 C 0.517 3.483 15 O -0.616 6.616 16 C -0.208 4.208 17 C -0.056 4.056 18 C -0.059 4.059 19 C -0.148 4.148 20 C 0.061 3.939 21 O -0.406 6.406 22 C 0.062 3.938 23 C -0.149 4.149 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -9.942 -19.118 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.326 5.326 13 C -0.060 4.060 14 C 0.309 3.691 15 O -0.502 6.502 16 C -0.228 4.228 17 C -0.076 4.076 18 C -0.077 4.077 19 C -0.186 4.186 20 C -0.015 4.015 21 O -0.325 6.325 22 C -0.014 4.014 23 C -0.187 4.187 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.179 0.821 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.027 -9.188 -18.985 21.936 hybrid contribution -0.092 0.228 1.642 1.660 sum 5.936 -8.961 -17.343 20.404 Atomic orbital electron populations 1.21879 0.97006 1.00250 0.99946 1.18558 0.91771 0.92156 0.81889 0.97644 1.21604 1.31899 1.13034 0.91160 0.92163 1.25782 0.95060 0.95667 1.02150 1.70037 1.37355 1.23960 1.24419 0.85361 0.78255 0.78447 0.78668 1.18850 1.21130 1.19785 1.48164 1.48632 1.13502 1.22252 1.21864 1.01483 0.80169 1.02448 1.19483 0.78581 0.86217 0.84848 1.90686 1.60977 1.19771 1.78738 1.22795 1.03738 1.02066 0.94226 1.23721 0.91352 0.99036 0.93503 1.20468 0.95918 1.00103 0.91194 1.22217 1.01933 1.00261 0.94157 1.22703 0.80092 1.00957 0.97774 1.87912 1.21530 1.76506 1.46590 1.22685 0.99578 0.95254 0.83932 1.22220 0.94274 1.02476 0.99723 0.96198 0.93102 0.91329 0.92599 0.92626 0.91074 0.88369 0.82085 0.88344 0.87998 0.91957 0.89616 0.87666 0.91405 0.91411 0.87761 0.91962 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.91 16 2 C 0.26 13.97 2.64 44.24 0.12 14.09 16 3 H 0.01 0.36 6.90 -2.39 -0.02 0.35 16 4 C -0.54 -30.06 8.37 25.60 0.21 -29.85 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 8 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.60 -26.30 2.75 -831.08 -2.29 -28.59 16 13 C 0.08 2.62 9.39 127.77 1.20 3.82 16 14 C 0.52 22.62 7.63 86.57 0.66 23.28 16 15 O -0.62 -33.34 15.55 -4.06 -0.06 -33.40 16 16 C -0.21 -6.16 8.82 23.43 0.21 -5.95 16 17 C -0.06 -1.48 8.36 24.52 0.20 -1.27 16 18 C -0.06 -1.04 2.57 -11.42 -0.03 -1.07 16 19 C -0.15 -2.40 5.40 30.68 0.17 -2.23 16 20 C 0.06 0.84 6.84 72.01 0.49 1.33 16 21 O -0.41 -7.36 10.77 -148.98 -1.60 -8.96 16 22 C 0.06 0.88 6.84 72.01 0.49 1.37 16 23 C -0.15 -2.52 5.41 30.69 0.17 -2.35 16 24 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.05 2.25 6.66 -2.39 -0.02 2.24 16 26 H 0.07 3.76 6.07 -2.38 -0.01 3.74 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 30 H 0.10 2.22 6.10 -2.38 -0.01 2.21 16 31 H 0.16 3.42 6.04 -2.91 -0.02 3.41 16 32 H 0.10 3.16 7.49 -2.91 -0.02 3.14 16 33 H 0.10 1.41 7.81 -2.39 -0.02 1.39 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.73 328.63 4.30 -69.44 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.00 Total: 13.19 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.98 Total: -3.59 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.04 Total: -82.32 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.67 Total: -42.37 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.73 4.30 -69.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491792639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.732 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds