Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20762 * 120.00228 * 2 1 4 4 C 1.50699 * 119.99860 * 180.02562 * 2 1 3 5 5 H 1.08999 * 112.91010 * 26.74563 * 4 2 1 6 6 C 1.53784 * 113.61326 * 255.49200 * 4 2 1 7 7 C 1.53774 * 87.08308 * 220.01829 * 6 4 2 8 8 H 1.09001 * 113.61429 * 270.80177 * 7 6 4 9 9 C 1.50701 * 113.61793 * 139.98147 * 7 6 4 10 10 O 1.21278 * 120.00429 * 224.47228 * 9 7 6 11 11 N 1.34779 * 119.99466 * 44.46461 * 9 7 6 12 12 C 1.46498 * 119.99703 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47148 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47370 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00116 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00130 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00088 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46973 * 90.00131 * 18 16 14 20 20 H 1.48503 * 109.46933 * 330.00595 * 18 16 14 21 21 H 1.48496 * 109.47418 * 210.00196 * 18 16 14 22 22 C 1.53783 * 113.61514 * 157.99816 * 4 2 1 23 23 C 1.52998 * 113.61427 * 25.43053 * 22 4 2 24 24 C 1.53004 * 113.61467 * 254.52797 * 22 4 2 25 25 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47169 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.47200 * 59.99836 * 1 2 3 28 28 H 1.09007 * 113.60862 * 105.47029 * 6 4 2 29 29 H 1.09000 * 113.61357 * 334.57268 * 6 4 2 30 30 H 0.97006 * 120.00223 * 0.02562 * 11 9 7 31 31 H 1.09009 * 109.47235 * 60.00593 * 12 11 9 32 32 H 1.08998 * 109.47270 * 300.00417 * 12 11 9 33 33 H 1.09002 * 109.47020 * 59.99859 * 13 12 11 34 34 H 1.08998 * 109.47217 * 300.00256 * 13 12 11 35 35 H 0.96998 * 120.00408 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47244 * 164.50244 * 23 22 4 37 37 H 1.09000 * 109.47048 * 284.50128 * 23 22 4 38 38 H 1.09001 * 109.47190 * 44.50173 * 23 22 4 39 39 H 1.09004 * 109.46816 * 322.49978 * 24 22 4 40 40 H 1.08994 * 109.46863 * 82.50218 * 24 22 4 41 41 H 1.08999 * 109.46929 * 202.50006 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.6961 -2.1207 -0.4528 6 6 2.8741 -1.6627 1.3634 7 6 4.1075 -2.1585 0.5903 8 1 4.0487 -3.2077 0.3009 9 6 5.4156 -1.8059 1.2502 10 8 6.3326 -1.3719 0.5856 11 7 5.5665 -1.9728 2.5791 12 6 6.8379 -1.6296 3.2207 13 6 6.7444 -1.9120 4.7215 14 6 8.0522 -1.5583 5.3817 15 1 8.8685 -1.1712 4.7900 16 6 8.2068 -1.7299 6.7410 17 7 9.3482 -1.4217 7.3170 18 14 6.7951 -2.4001 7.7644 19 1 6.8827 -3.8816 7.8185 20 1 5.5041 -2.0028 7.1473 21 1 6.8762 -1.8489 9.1409 22 6 3.6999 -1.1852 -0.5284 23 6 4.2961 0.2149 -0.3700 24 6 3.8862 -1.7562 -1.9356 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 2.3401 -2.4550 1.8881 29 1 3.0731 -0.7958 1.9934 30 1 4.8331 -2.3202 3.1106 31 1 7.0512 -0.5723 3.0622 32 1 7.6375 -2.2304 2.7874 33 1 6.5314 -2.9692 4.8797 34 1 5.9448 -1.3114 5.1551 35 1 9.4569 -1.5421 8.2734 36 1 5.3771 0.1664 -0.5006 37 1 3.8688 0.8789 -1.1215 38 1 4.0671 0.5969 0.6248 39 1 3.2774 -2.6534 -2.0472 40 1 3.5784 -1.0142 -2.6724 41 1 4.9356 -2.0076 -2.0897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548406465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -66.070897 kcal Electronic energy + Delta-G solvation = -20759.305634 eV Core-core repulsion = 17639.736905 eV Total energy + Delta-G solvation = -3119.568729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44065 -39.12188 -37.38406 -34.94816 -32.81468 -31.43909 -30.74588 -29.80820 -27.39854 -27.22353 -24.67376 -23.14286 -21.33860 -20.70232 -19.58638 -18.53168 -16.93205 -16.78084 -15.98165 -15.65583 -15.32146 -15.09499 -14.73685 -14.36994 -14.18649 -13.79610 -13.50297 -13.27570 -13.14627 -12.67012 -12.59645 -12.48426 -12.22710 -11.86458 -11.74849 -11.49908 -11.44419 -11.21506 -11.10132 -10.94091 -10.38313 -10.32810 -10.14820 -9.96192 -9.56274 -9.34056 -8.99032 -8.63031 -8.46523 -6.10708 -4.10744 1.71934 2.98451 3.24792 3.32344 3.33731 3.55987 3.90417 4.13988 4.22106 4.36964 4.37698 4.59932 4.83831 5.05850 5.12653 5.13487 5.22156 5.23049 5.28340 5.34250 5.44205 5.55865 5.64146 5.71678 5.83901 6.00289 6.07538 6.13383 6.21511 6.23773 6.33036 6.57225 6.60044 6.82233 7.15442 7.24145 7.37446 7.67442 7.95673 8.44430 8.63476 8.93914 9.49411 11.02440 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.004106 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.049005 B = 6818.236834 C = 7324.918243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.362 3.638 3 O -0.444 6.444 4 C -0.164 4.164 5 H 0.115 0.885 6 C -0.113 4.113 7 C -0.128 4.128 8 H 0.120 0.880 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.726 5.726 12 C 0.130 3.870 13 C -0.022 4.022 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.266 1.266 21 H -0.287 1.287 22 C -0.040 4.040 23 C -0.124 4.124 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.616 -2.765 -15.429 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.237 3.763 3 O -0.317 6.317 4 C -0.183 4.183 5 H 0.133 0.867 6 C -0.151 4.151 7 C -0.149 4.149 8 H 0.138 0.862 9 C 0.303 3.697 10 O -0.418 6.418 11 N -0.376 5.376 12 C 0.007 3.993 13 C -0.059 4.059 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.191 1.191 21 H -0.213 1.213 22 C -0.040 4.040 23 C -0.181 4.181 24 C -0.194 4.194 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.503 -1.874 -15.715 25.116 hybrid contribution -1.150 -0.749 1.017 1.708 sum -20.652 -2.623 -14.698 25.484 Atomic orbital electron populations 1.22299 0.94842 1.04413 1.04553 1.24385 0.91526 0.89991 0.70446 1.90472 1.71214 1.35172 1.34815 1.23384 0.97032 0.98030 0.99853 0.86651 1.22848 0.95406 1.02129 0.94699 1.22897 0.92649 1.01540 0.97791 0.86246 1.20234 0.88813 0.78174 0.82444 1.90651 1.42262 1.45249 1.63601 1.46355 1.17525 1.65843 1.07879 1.21490 0.83279 1.00260 0.94234 1.19787 0.98820 0.96609 0.90714 1.20932 0.97801 1.44031 0.93336 0.90639 1.25003 0.95624 0.94868 0.97795 1.69903 1.24376 1.48347 1.11077 0.86751 0.83256 0.79420 0.79637 1.20224 1.19113 1.21265 1.21585 0.91753 0.96553 0.94134 1.21819 1.01321 0.92484 1.02464 1.21757 1.02669 1.00110 0.94864 0.90181 0.89170 0.89257 0.89640 0.88917 0.77237 0.92027 0.92051 0.96493 0.96076 0.92557 0.90928 0.92222 0.92243 0.92623 0.92520 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 10.33 36.00 0.37 -0.81 16 2 C 0.36 3.36 6.68 -29.04 -0.19 3.17 16 3 O -0.44 -5.87 13.18 6.00 0.08 -5.79 16 4 C -0.16 -1.36 3.51 -90.96 -0.32 -1.68 16 5 H 0.12 0.64 7.95 -51.93 -0.41 0.23 16 6 C -0.11 -1.03 6.25 -25.92 -0.16 -1.19 16 7 C -0.13 -1.43 3.70 -90.96 -0.34 -1.77 16 8 H 0.12 1.10 8.10 -51.93 -0.42 0.68 16 9 C 0.52 8.32 6.54 -10.98 -0.07 8.25 16 10 O -0.54 -10.75 14.60 5.56 0.08 -10.67 16 11 N -0.73 -11.91 5.45 -60.29 -0.33 -12.23 16 12 C 0.13 2.68 5.61 -4.04 -0.02 2.65 16 13 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 14 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 18 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.04 -0.44 1.10 -153.69 -0.17 -0.61 16 23 C -0.12 -1.77 6.27 37.16 0.23 -1.54 16 24 C -0.14 -1.33 9.20 37.16 0.34 -0.98 16 25 H 0.08 0.29 7.99 -51.93 -0.41 -0.12 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.01 7.51 -51.93 -0.39 0.63 16 30 H 0.39 5.38 8.00 -40.82 -0.33 5.06 16 31 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.21 6.18 -51.93 -0.32 0.89 16 37 H 0.06 0.83 6.99 -51.93 -0.36 0.47 16 38 H 0.06 0.93 6.19 -51.93 -0.32 0.61 16 39 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -33.68 328.79 -6.68 -40.36 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.69 Total: 2.03 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.88 Total: -8.33 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.45 Total: -38.96 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.16 Total: -16.46 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.68 -6.68 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548406465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.709 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds