Wall clock time and date at job start Mon Mar 30 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00485 * 2 1 4 4 N 1.46501 * 109.46974 * 124.99840 * 3 2 1 5 5 C 1.46500 * 120.00084 * 268.08014 * 4 3 2 6 6 C 1.50702 * 109.47049 * 275.86808 * 5 4 3 7 7 H 1.08004 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00155 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00052 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99933 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47095 * 90.00102 * 10 8 6 12 12 H 1.48502 * 109.47144 * 210.00029 * 10 8 6 13 13 H 1.48504 * 109.47014 * 330.00036 * 10 8 6 14 14 C 1.34777 * 120.00244 * 88.07783 * 4 3 2 15 15 O 1.21283 * 119.99579 * 5.04485 * 14 4 3 16 16 C 1.50692 * 120.00216 * 185.04316 * 14 4 3 17 17 H 1.09004 * 109.47389 * 313.93352 * 16 14 4 18 18 C 1.53001 * 109.47308 * 73.93199 * 16 14 4 19 19 O 1.42898 * 109.47348 * 193.93396 * 16 14 4 20 20 C 1.42902 * 114.00669 * 150.00091 * 19 16 14 21 21 C 1.53000 * 109.47479 * 179.97438 * 20 19 16 22 22 C 1.52997 * 117.49732 * 243.62129 * 21 20 19 23 23 C 1.52991 * 117.49825 * 174.99724 * 21 20 19 24 24 H 1.08003 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00633 * 179.97438 * 1 2 3 26 26 H 1.08011 * 119.99601 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46738 * 5.00534 * 3 2 1 28 28 H 1.08992 * 109.47525 * 244.99734 * 3 2 1 29 29 H 1.09001 * 109.47193 * 35.86883 * 5 4 3 30 30 H 1.08998 * 109.47464 * 155.87187 * 5 4 3 31 31 H 0.96998 * 119.99759 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47291 * 65.83683 * 18 16 14 33 33 H 1.09003 * 109.47574 * 185.83882 * 18 16 14 34 34 H 1.08998 * 109.46887 * 305.84109 * 18 16 14 35 35 H 1.09002 * 109.46295 * 300.00306 * 20 19 16 36 36 H 1.08997 * 109.46972 * 59.99543 * 20 19 16 37 37 H 1.09004 * 115.54321 * 29.33011 * 21 20 19 38 38 H 1.08992 * 117.50083 * 0.02562 * 22 21 20 39 39 H 1.09001 * 117.49427 * 145.02256 * 22 21 20 40 40 H 1.08996 * 117.50232 * 214.98126 * 23 21 20 41 41 H 1.09003 * 117.49965 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5724 1.9032 2.4129 6 6 2.7630 3.3979 2.3832 7 1 3.1581 3.8744 1.4982 8 6 2.4321 4.1571 3.4855 9 7 2.5980 5.4615 3.4594 10 14 1.7481 3.3330 5.0160 11 1 2.8664 2.9593 5.9188 12 1 0.8373 4.2721 5.7188 13 1 0.9967 2.1125 4.6272 14 6 4.2372 0.8304 0.9936 15 8 4.6173 0.4411 -0.0904 16 6 5.1553 0.7537 2.1861 17 1 5.1238 1.6977 2.7303 18 6 4.7016 -0.3810 3.1069 19 8 6.4908 0.5031 1.7439 20 6 7.4980 1.0528 2.5956 21 6 8.8805 0.7245 2.0284 22 6 9.7959 -0.1669 2.8700 23 6 10.0957 1.3275 2.7358 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6214 1.4025 -0.9313 29 1 1.5206 1.6744 2.5844 30 1 3.1728 1.4763 3.2162 31 1 2.3655 5.9955 4.2351 32 1 4.8311 -1.3359 2.5976 33 1 5.2999 -0.3709 4.0179 34 1 3.6505 -0.2444 3.3610 35 1 7.3754 2.1344 2.6520 36 1 7.4038 0.6240 3.5933 37 1 8.9307 0.6175 0.9448 38 1 9.4131 -0.5197 3.8276 39 1 10.4486 -0.8606 2.3402 40 1 10.9456 1.6168 2.1178 41 1 9.9103 1.9577 3.6056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590038528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:57 Heat of formation + Delta-G solvation = -51.402932 kcal Electronic energy + Delta-G solvation = -20891.542116 eV Core-core repulsion = 17772.609438 eV Total energy + Delta-G solvation = -3118.932678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21142 -39.27520 -37.58340 -37.09585 -35.16896 -34.16986 -32.29690 -30.04230 -28.07596 -27.43382 -25.04290 -23.86950 -23.23756 -21.76739 -21.20338 -19.94077 -19.07406 -18.50661 -17.86485 -17.12438 -16.57353 -16.36296 -16.10789 -15.94768 -15.67995 -15.05868 -14.73152 -14.38436 -14.22317 -14.08349 -13.66666 -13.55863 -13.12811 -13.08509 -12.86038 -12.60422 -12.44434 -12.37576 -12.30018 -11.97729 -11.93505 -11.70243 -11.41638 -11.31327 -10.84790 -10.76192 -10.48263 -10.23928 -9.53608 -8.31850 -6.41111 1.23556 1.39637 1.42509 1.51983 1.57301 2.03993 2.33621 2.72256 2.97448 3.01686 3.52408 3.87261 3.94122 3.97902 4.03525 4.06841 4.13697 4.20155 4.28680 4.48991 4.49526 4.58085 4.66672 4.69872 4.75710 4.76978 4.78776 4.84191 4.99958 5.02924 5.12155 5.21169 5.24581 5.41654 5.51717 5.66996 5.86815 6.09763 6.14276 6.54854 6.65014 7.16641 7.28086 8.84599 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.006485 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.319335 B = 4316.613107 C = 5667.141526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.141 3.859 4 N -0.588 5.588 5 C 0.212 3.788 6 C -0.549 4.549 7 H 0.026 0.974 8 C 0.020 3.980 9 N -0.942 5.942 10 Si 0.938 3.062 11 H -0.255 1.255 12 H -0.285 1.285 13 H -0.234 1.234 14 C 0.513 3.487 15 O -0.581 6.581 16 C 0.071 3.929 17 H 0.087 0.913 18 C -0.162 4.162 19 O -0.380 6.380 20 C 0.085 3.915 21 C -0.177 4.177 22 C -0.164 4.164 23 C -0.163 4.163 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.270 0.730 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -12.386 3.497 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.019 3.981 4 N -0.318 5.318 5 C 0.091 3.909 6 C -0.588 4.588 7 H 0.044 0.956 8 C -0.179 4.179 9 N -0.581 5.581 10 Si 0.760 3.240 11 H -0.180 1.180 12 H -0.210 1.210 13 H -0.157 1.157 14 C 0.301 3.699 15 O -0.462 6.462 16 C 0.010 3.990 17 H 0.104 0.896 18 C -0.219 4.219 19 O -0.299 6.299 20 C 0.009 3.991 21 C -0.196 4.196 22 C -0.201 4.201 23 C -0.200 4.200 24 H 0.122 0.878 25 H 0.141 0.859 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.983 -12.514 2.868 13.772 hybrid contribution -0.311 0.791 0.405 0.942 sum 4.672 -11.723 3.273 13.037 Atomic orbital electron populations 1.24061 0.94791 1.03259 0.97741 1.23123 0.96749 0.97539 1.02458 1.20505 0.91829 0.96613 0.89184 1.47907 1.11959 1.57746 1.14208 1.19831 0.97296 0.92030 0.81766 1.21525 1.44372 0.92039 1.00829 0.95591 1.25828 0.94851 0.95053 1.02155 1.70060 1.49051 1.06968 1.32000 0.85853 0.79701 0.79748 0.78740 1.17983 1.21044 1.15707 1.20771 0.82449 0.76758 0.89914 1.90581 1.75549 1.50952 1.29115 1.21924 0.82902 1.01104 0.93038 0.89562 1.22233 1.03052 0.97260 0.99366 1.87941 1.13263 1.77348 1.51392 1.22281 0.86319 0.97034 0.93450 1.22064 0.89950 1.08346 0.99213 1.23163 1.01908 0.93555 1.01473 1.23082 0.97564 0.96567 1.02760 0.87793 0.85941 0.87958 0.89789 0.91531 0.93334 0.92583 0.92140 0.91176 0.88982 0.90084 0.93738 0.91111 0.88501 0.87710 0.87583 0.87255 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 14.32 67.78 0.97 -3.02 16 2 C -0.18 -5.56 9.84 25.65 0.25 -5.31 16 3 C 0.14 5.36 5.88 85.63 0.50 5.86 16 4 N -0.59 -24.68 2.44 -830.52 -2.03 -26.71 16 5 C 0.21 9.06 3.65 85.63 0.31 9.37 16 6 C -0.55 -29.31 9.93 25.60 0.25 -29.06 16 7 H 0.03 1.62 8.06 -2.91 -0.02 1.59 16 8 C 0.02 1.08 5.47 84.66 0.46 1.55 16 9 N -0.94 -55.43 13.96 21.45 0.30 -55.13 16 10 Si 0.94 38.36 27.47 68.60 1.88 40.24 16 11 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 14 C 0.51 22.40 6.96 87.65 0.61 23.01 16 15 O -0.58 -28.71 16.14 15.62 0.25 -28.46 16 16 C 0.07 2.67 2.28 29.85 0.07 2.73 16 17 H 0.09 3.39 6.89 -2.38 -0.02 3.37 16 18 C -0.16 -4.65 9.11 71.98 0.66 -3.99 16 19 O -0.38 -14.37 9.56 -130.32 -1.25 -15.62 16 20 C 0.09 2.54 6.03 71.98 0.43 2.98 16 21 C -0.18 -4.55 6.06 -10.80 -0.07 -4.62 16 22 C -0.16 -3.12 10.18 30.59 0.31 -2.81 16 23 C -0.16 -3.14 10.25 30.59 0.31 -2.83 16 24 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 25 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 26 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.08 3.18 7.71 -2.39 -0.02 3.16 16 28 H 0.07 2.70 7.41 -2.39 -0.02 2.68 16 29 H 0.05 1.97 7.17 -2.39 -0.02 1.95 16 30 H 0.06 2.18 3.99 -2.39 -0.01 2.17 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.13 8.01 -2.39 -0.02 2.11 16 34 H 0.08 2.24 6.30 -2.39 -0.02 2.23 16 35 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.07 1.76 7.74 -2.39 -0.02 1.74 16 37 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 38 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.71 342.65 5.18 -63.54 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.93 Total: 28.27 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.08 Total: -6.14 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.73 Total: -81.83 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.99 Total: -44.08 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.88 Total: 40.24 kcal Total: -68.71 5.18 -63.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.134 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds