Wall clock time and date at job start Mon Mar 30 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00381 * 2 1 4 4 C 1.53000 * 109.47815 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47344 * 174.99554 * 4 3 2 6 6 N 1.46897 * 109.47226 * 295.00588 * 4 3 2 7 7 C 1.46905 * 111.00138 * 204.99896 * 6 4 3 8 8 C 1.52999 * 109.47028 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46929 * 304.98924 * 8 7 6 10 10 C 1.52997 * 109.47317 * 64.99820 * 8 7 6 11 11 C 1.53006 * 109.46623 * 184.99640 * 8 7 6 12 12 C 1.50703 * 109.46967 * 174.99771 * 11 8 7 13 13 H 1.07996 * 119.99755 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00135 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99855 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99716 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47438 * 89.99972 * 16 14 12 18 18 H 1.48502 * 109.46801 * 209.99792 * 16 14 12 19 19 H 1.48503 * 109.47368 * 329.99562 * 16 14 12 20 20 C 1.50701 * 109.46791 * 54.99934 * 4 3 2 21 21 C 1.34521 * 125.79057 * 100.00106 * 20 4 3 22 22 C 1.41381 * 106.84176 * 180.02562 * 21 20 4 23 23 C 1.34519 * 106.83883 * 359.97438 * 22 21 20 24 24 O 1.34298 * 108.42306 * 359.73844 * 23 22 21 25 25 H 1.09008 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47106 * 299.99952 * 1 2 3 27 27 H 1.08996 * 109.47329 * 60.00193 * 1 2 3 28 28 H 1.09002 * 109.47168 * 59.99902 * 3 2 1 29 29 H 1.08998 * 109.46943 * 300.00219 * 3 2 1 30 30 H 1.00906 * 110.99758 * 328.94770 * 6 4 3 31 31 H 1.08994 * 109.47305 * 59.99331 * 7 6 4 32 32 H 1.08998 * 109.46287 * 299.99779 * 7 6 4 33 33 H 1.09002 * 109.47153 * 299.99641 * 10 8 7 34 34 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.47261 * 59.99813 * 10 8 7 36 36 H 1.09001 * 109.47326 * 294.99995 * 11 8 7 37 37 H 1.09000 * 109.46904 * 55.00348 * 11 8 7 38 38 H 0.97002 * 119.99949 * 180.02562 * 15 14 12 39 39 H 1.07996 * 126.57371 * 0.03851 * 21 20 4 40 40 H 1.08003 * 126.57791 * 179.97438 * 22 21 20 41 41 H 1.08001 * 125.78511 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 -0.0890 6 7 3.9769 0.5626 1.2561 7 6 5.3587 0.9454 1.5759 8 6 5.7816 0.2802 2.8872 9 1 5.0678 0.5350 3.6705 10 6 5.8149 -1.2380 2.7014 11 6 7.1735 0.7760 3.2847 12 6 7.5390 0.2170 4.6357 13 1 6.8478 -0.4277 5.1582 14 6 8.7560 0.5278 5.2041 15 7 9.0747 0.0404 6.3832 16 14 9.9516 1.6424 4.2999 17 1 9.6945 3.0551 4.6785 18 1 11.3433 1.2770 4.6672 19 1 9.7678 1.4811 2.8351 20 6 3.9723 0.3324 -1.1629 21 6 4.4510 0.7869 -2.3350 22 6 4.7326 -0.3478 -3.1301 23 6 4.4097 -1.4278 -2.3961 24 8 3.9555 -1.0100 -1.2033 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.3526 0.7953 2.0139 31 1 5.4204 2.0284 1.6818 32 1 6.0206 0.6205 0.7732 33 1 4.8233 -1.5913 2.4182 34 1 6.1166 -1.7118 3.6356 35 1 6.5288 -1.4927 1.9180 36 1 7.9023 0.4446 2.5451 37 1 7.1718 1.8651 3.3306 38 1 9.9308 0.2593 6.7833 39 1 4.5932 1.8202 -2.6148 40 1 5.1307 -0.3474 -4.1341 41 1 4.5045 -2.4566 -2.7108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602563715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:06 Heat of formation + Delta-G solvation = -36.937443 kcal Electronic energy + Delta-G solvation = -20672.438940 eV Core-core repulsion = 17554.133533 eV Total energy + Delta-G solvation = -3118.305407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.33628 -38.41668 -36.80405 -34.48190 -32.77099 -32.16167 -30.14813 -28.38528 -27.28403 -26.23532 -24.83938 -22.95935 -22.03814 -21.48031 -20.00287 -19.06647 -17.34947 -16.77850 -16.56392 -16.17355 -15.87132 -15.15771 -14.80246 -14.60429 -14.30666 -13.74613 -13.48867 -13.26616 -12.89842 -12.65124 -12.46039 -12.30985 -11.97741 -11.85857 -11.66246 -11.47481 -11.31817 -10.90830 -10.67119 -10.33297 -9.88484 -9.84939 -9.73851 -9.61908 -9.38082 -9.02080 -8.48213 -8.31603 -8.26761 -5.98622 -3.95200 1.93812 2.72292 3.20726 3.33299 3.41078 3.45502 3.58096 4.17500 4.49941 4.63908 4.78543 5.06458 5.13737 5.14180 5.17565 5.21344 5.27066 5.34540 5.35549 5.52315 5.61786 5.74932 5.91314 5.96079 6.07216 6.22268 6.35306 6.45388 6.59129 6.66368 6.89427 6.98261 7.09508 7.16527 7.23833 7.33612 7.44953 7.51102 7.58293 7.86519 8.61427 9.07582 9.64463 11.14899 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.004386 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.758217 B = 6382.767936 C = 6940.555838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.062 3.938 4 C 0.163 3.837 5 H 0.086 0.914 6 N -0.669 5.669 7 C 0.060 3.940 8 C -0.072 4.072 9 H 0.060 0.940 10 C -0.123 4.123 11 C -0.009 4.009 12 C -0.511 4.511 13 H 0.074 0.926 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.877 3.123 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.030 3.970 21 C -0.231 4.231 22 C -0.220 4.220 23 C -0.048 4.048 24 O -0.138 6.138 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.346 0.654 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.015 0.985 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 2.634 -17.911 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.016 4.016 4 C 0.053 3.947 5 H 0.103 0.897 6 N -0.302 5.302 7 C -0.068 4.068 8 C -0.090 4.090 9 H 0.078 0.922 10 C -0.181 4.181 11 C -0.047 4.047 12 C -0.549 4.549 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.705 3.295 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.022 4.022 21 C -0.251 4.251 22 C -0.239 4.239 23 C -0.117 4.117 24 O -0.031 6.031 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.123 1.684 -17.819 23.432 hybrid contribution 0.617 1.863 -0.414 2.006 sum -14.507 3.547 -18.233 23.568 Atomic orbital electron populations 1.22739 0.81601 1.02777 0.99525 1.88100 1.18871 1.26167 1.95201 1.22732 0.92194 0.86000 1.00637 1.20135 0.92764 0.93603 0.88231 0.89674 1.60342 1.04248 1.62159 1.03433 1.22291 0.88172 0.96827 0.99509 1.20986 0.98736 0.95971 0.93355 0.92182 1.21582 0.99971 0.95386 1.01135 1.19618 0.92226 0.95484 0.97371 1.21136 1.02549 1.29968 1.01267 0.90798 1.25021 0.97972 0.95867 0.94714 1.69915 1.22829 1.45482 1.16283 0.86816 0.80536 0.81221 0.80929 1.20463 1.21477 1.19067 1.22100 1.02488 0.81308 0.96330 1.21492 1.08686 0.99956 0.94930 1.21687 1.08213 0.92281 1.01705 1.24029 1.03289 0.99922 0.84466 1.84169 1.64006 1.21740 1.33224 0.89626 0.94171 0.94540 0.92376 0.92572 0.83361 0.95623 0.91495 0.93436 0.92342 0.94357 0.96628 0.97435 0.92867 0.84149 0.84062 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.50 10.03 -35.23 -0.35 -4.85 16 3 C 0.06 0.63 5.48 37.16 0.20 0.84 16 4 C 0.16 2.00 2.87 -68.87 -0.20 1.80 16 5 H 0.09 0.91 7.79 -51.93 -0.40 0.51 16 6 N -0.67 -9.67 5.69 -107.95 -0.61 -10.28 16 7 C 0.06 1.01 4.87 -3.82 -0.02 0.99 16 8 C -0.07 -1.44 2.48 -90.62 -0.22 -1.66 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 11 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 12 C -0.51 -14.64 8.96 -34.44 -0.31 -14.94 16 13 H 0.07 2.27 7.30 -52.49 -0.38 1.89 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.26 13.96 55.43 0.77 -27.48 16 16 Si 0.88 22.08 27.47 -169.99 -4.67 17.42 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 20 C 0.03 0.42 5.47 -35.62 -0.19 0.23 16 21 C -0.23 -2.94 10.80 -39.70 -0.43 -3.37 16 22 C -0.22 -2.65 10.91 -39.70 -0.43 -3.08 16 23 C -0.05 -0.60 12.09 29.42 0.36 -0.25 16 24 O -0.14 -2.14 10.53 5.71 0.06 -2.08 16 25 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.35 4.62 8.28 -39.29 -0.33 4.29 16 31 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 33 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 34 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -33.17 339.50 -6.55 -39.72 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.87 Total: 1.19 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 0.00 Total: -18.75 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.16 Total: -37.77 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.29 Total: -6.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.17 -6.55 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.784 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds