Wall clock time and date at job start Mon Mar 30 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.46846 * 60.00282 * 16 15 14 18 18 O 1.42892 * 109.47309 * 300.00144 * 16 15 14 19 19 C 1.50697 * 109.47115 * 179.97438 * 16 15 14 20 20 C 1.34516 * 125.78954 * 149.99962 * 19 16 15 21 21 C 1.41381 * 106.84044 * 180.02562 * 20 19 16 22 22 C 1.34504 * 106.84399 * 0.02562 * 21 20 19 23 23 O 1.34302 * 125.79029 * 329.69869 * 19 16 15 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 32 32 H 1.00901 * 111.00083 * 303.94749 * 14 13 2 33 33 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 34 34 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 35 35 H 1.09003 * 109.47257 * 59.99523 * 17 16 15 36 36 H 1.08994 * 109.47180 * 179.97438 * 17 16 15 37 37 H 1.09004 * 109.46622 * 300.00026 * 17 16 15 38 38 H 0.96695 * 114.00186 * 299.99704 * 18 16 15 39 39 H 1.07998 * 126.57869 * 359.97159 * 20 19 16 40 40 H 1.08006 * 126.57601 * 179.97438 * 21 20 19 41 41 H 1.07999 * 125.79507 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.3110 1.5920 -4.8012 18 8 0.2777 0.2917 -4.9246 19 6 2.1898 -0.4899 -6.1422 20 6 1.5930 -0.4414 -7.3468 21 6 2.3831 -1.2160 -8.2269 22 6 3.4152 -1.6919 -7.5076 23 8 3.2967 -1.2433 -6.2471 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.8926 -0.0452 5.6800 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 0.6530 0.1793 -2.4754 33 1 3.2128 -0.7038 -3.6399 34 1 1.6922 -1.6246 -3.7300 35 1 3.3980 1.5151 -4.7741 36 1 2.0099 2.1742 -5.6720 37 1 1.9590 2.0846 -3.8948 38 1 -0.1756 -0.5606 -4.9805 39 1 0.6841 0.0870 -7.5938 40 1 2.1938 -1.3924 -9.2755 41 1 4.2082 -2.3226 -7.8815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787775288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:41 Heat of formation + Delta-G solvation = -48.719558 kcal Electronic energy + Delta-G solvation = -20305.068748 eV Core-core repulsion = 17186.252429 eV Total energy + Delta-G solvation = -3118.816318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.86362 -38.67969 -36.56887 -33.91927 -33.14009 -32.34300 -31.40161 -28.80251 -27.62779 -26.41709 -24.67335 -22.49323 -21.99065 -21.49080 -20.32355 -19.02443 -18.31384 -16.99665 -16.51076 -16.34127 -15.69878 -15.38691 -14.57660 -14.44311 -13.94382 -13.57961 -13.29653 -13.07138 -12.97287 -12.72770 -12.56720 -12.44761 -12.10336 -12.08093 -11.77788 -11.71186 -11.42612 -10.98662 -10.67824 -10.58147 -10.33734 -10.17625 -9.88845 -9.64988 -9.42487 -9.03983 -8.76070 -8.49760 -8.23432 -6.00052 -3.96900 1.44634 2.35001 2.66657 3.32788 3.40091 3.43610 3.79448 4.19643 4.48513 4.55879 4.65376 4.78890 4.86761 4.91534 5.33514 5.46530 5.49096 5.52856 5.62897 5.67283 5.70522 5.74695 5.81077 5.86887 5.97583 6.15429 6.21152 6.22492 6.38512 6.48046 6.76958 6.83203 6.99094 7.07962 7.20508 7.29569 7.32007 7.50607 7.62119 7.84765 8.59562 9.05851 9.62915 11.13428 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003369 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.885743 B = 8309.491701 C = 8757.187406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.035 3.965 16 C 0.219 3.781 17 C -0.126 4.126 18 O -0.536 6.536 19 C -0.041 4.041 20 C -0.196 4.196 21 C -0.217 4.217 22 C -0.042 4.042 23 O -0.169 6.169 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.346 0.654 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.378 0.622 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -3.659 -25.733 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.314 5.314 15 C -0.095 4.095 16 C 0.177 3.823 17 C -0.183 4.183 18 O -0.342 6.342 19 C -0.092 4.092 20 C -0.215 4.215 21 C -0.236 4.236 22 C -0.109 4.109 23 O -0.065 6.065 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.166 0.834 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.858 -2.656 -25.218 25.425 hybrid contribution -0.216 -2.383 -0.235 2.404 sum 1.642 -5.039 -25.453 25.999 Atomic orbital electron populations 1.21750 0.96171 1.00465 1.00939 1.21024 0.95281 1.00204 0.92869 0.90950 1.19605 0.95581 0.96023 0.93447 1.21138 1.35287 1.09513 0.89082 0.90783 1.25027 0.95721 0.96889 0.95970 1.69914 1.47240 1.39326 0.98003 0.86805 0.80676 0.84533 0.77393 1.20372 1.21522 1.19160 1.22180 1.00314 0.94436 0.89731 1.60462 1.20533 1.49799 1.00597 1.22546 1.01938 0.94670 0.90319 1.19539 0.80890 0.95692 0.86158 1.21668 1.00253 0.92560 1.03807 1.86654 1.16439 1.35032 1.96057 1.23375 0.88562 0.98571 0.98741 1.21589 1.03110 1.04640 0.92201 1.21867 0.97267 1.03266 1.01230 1.24104 1.02040 1.03000 0.81800 1.84045 1.39348 1.52372 1.30702 0.94541 0.94165 0.91319 0.96850 0.97138 0.92844 0.91501 0.95901 0.83382 0.89715 0.95199 0.91055 0.92286 0.89098 0.77471 0.83210 0.83457 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.77 37.16 0.33 -2.17 16 2 C -0.07 -1.47 2.55 -90.62 -0.23 -1.70 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C -0.01 -0.21 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 14 N -0.68 -9.45 5.73 -113.78 -0.65 -10.10 16 15 C 0.04 0.42 4.60 -3.82 -0.02 0.41 16 16 C 0.22 2.37 1.10 -91.77 -0.10 2.26 16 17 C -0.13 -1.38 8.67 37.16 0.32 -1.06 16 18 O -0.54 -5.48 11.93 -35.23 -0.42 -5.90 16 19 C -0.04 -0.45 5.85 -35.63 -0.21 -0.65 16 20 C -0.20 -1.95 10.36 -39.70 -0.41 -2.36 16 21 C -0.22 -1.89 10.91 -39.71 -0.43 -2.32 16 22 C -0.04 -0.35 12.09 29.41 0.36 0.00 16 23 O -0.17 -1.86 10.27 5.69 0.06 -1.81 16 24 H 0.04 0.57 6.68 -51.93 -0.35 0.22 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 27 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 28 H 0.01 0.25 7.57 -51.92 -0.39 -0.15 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.35 4.69 6.37 -39.29 -0.25 4.44 16 33 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.10 7.60 -51.93 -0.39 0.70 16 38 H 0.38 2.75 9.04 45.56 0.41 3.16 16 39 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -31.70 334.36 -6.70 -38.40 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.91 Total: 4.37 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.92 Total: -19.94 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.12 Total: -37.42 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.36 Total: -7.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.70 -6.70 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787775288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.316 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds