Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47074 * 2 1 4 4 C 1.42902 * 114.00007 * 179.97438 * 3 2 1 5 5 C 1.53889 * 113.58903 * 149.99447 * 4 3 2 6 6 C 1.53263 * 86.88278 * 89.60627 * 5 4 3 7 7 C 1.52458 * 128.58487 * 245.05669 * 6 5 4 8 8 C 1.52459 * 128.58384 * 165.10887 * 6 5 4 9 9 H 1.08996 * 117.50988 * 225.08817 * 8 6 5 10 10 N 1.46496 * 117.51459 * 10.15817 * 8 6 5 11 11 C 1.34777 * 119.99875 * 205.00054 * 10 8 6 12 12 O 1.21279 * 120.00162 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00141 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.47300 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00338 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99426 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47361 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47264 * 120.00115 * 19 17 15 22 22 H 1.48500 * 109.46969 * 239.99720 * 19 17 15 23 23 C 1.53255 * 87.69185 * 25.08186 * 6 5 4 24 24 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47278 * 300.00822 * 1 2 3 26 26 H 1.09003 * 109.46352 * 60.00612 * 1 2 3 27 27 H 1.08997 * 109.47278 * 239.99178 * 2 1 3 28 28 H 1.08996 * 109.46713 * 119.99300 * 2 1 3 29 29 H 1.08996 * 112.88511 * 18.82793 * 4 3 2 30 30 H 1.09001 * 113.64750 * 335.11398 * 5 4 3 31 31 H 1.08993 * 113.64744 * 204.10250 * 5 4 3 32 32 H 1.08998 * 117.51059 * 134.94721 * 7 6 5 33 33 H 1.09006 * 117.51306 * 349.84869 * 7 6 5 34 34 H 0.96999 * 120.00082 * 24.99717 * 10 8 6 35 35 H 1.09004 * 109.47043 * 59.99777 * 13 11 10 36 36 H 1.09004 * 109.47476 * 299.99851 * 13 11 10 37 37 H 1.09000 * 109.46497 * 60.00269 * 14 13 11 38 38 H 1.09000 * 109.47312 * 300.00049 * 14 13 11 39 39 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.64670 * 89.41272 * 23 6 5 41 41 H 1.08998 * 113.64674 * 220.41951 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9487 2.7261 -0.7047 6 6 3.8497 3.4235 0.6565 7 6 2.9396 4.5741 1.0715 8 6 4.4605 4.7511 1.0913 9 1 4.9513 4.7849 2.0639 10 7 5.0572 5.5940 0.0524 11 6 6.0198 6.4807 0.3745 12 8 6.3916 6.5810 1.5246 13 6 6.6341 7.3474 -0.6942 14 6 7.6917 8.2580 -0.0670 15 6 8.3056 9.1252 -1.1358 16 1 7.9742 9.0362 -2.1599 17 6 9.2902 10.0323 -0.8062 18 7 9.6933 10.1411 0.4409 19 14 10.0506 11.1078 -2.1308 20 1 9.4271 10.7941 -3.4415 21 1 9.8190 12.5371 -1.8014 22 1 11.5107 10.8467 -2.2026 23 6 4.0018 2.0434 1.3052 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.9287 0.5461 -0.3231 30 1 3.2603 3.1236 -1.4505 31 1 4.9695 2.6336 -1.0753 32 1 2.4297 4.4917 2.0313 33 1 2.3834 5.0849 0.2854 34 1 4.7596 5.5140 -0.8673 35 1 5.8586 7.9574 -1.1576 36 1 7.1002 6.7161 -1.4507 37 1 8.4672 7.6483 0.3966 38 1 7.2253 8.8894 0.6892 39 1 10.3858 10.7796 0.6728 40 1 5.0375 1.7608 1.4939 41 1 3.3562 1.8934 2.1705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874805733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = -47.860528 kcal Electronic energy + Delta-G solvation = -19662.526456 eV Core-core repulsion = 16543.747388 eV Total energy + Delta-G solvation = -3118.779068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28508 -38.88163 -37.24516 -34.34489 -33.42602 -31.96745 -30.97283 -30.47545 -26.06186 -25.73673 -23.23529 -22.78955 -22.54284 -20.99278 -19.69163 -18.71889 -17.10251 -16.77967 -16.23747 -15.85781 -15.74337 -15.07007 -14.77430 -14.43021 -14.12522 -13.97747 -13.48930 -13.21928 -12.73060 -12.64097 -12.49094 -12.19724 -12.03754 -11.94063 -11.63451 -11.42935 -11.13848 -10.93957 -10.71050 -10.57860 -10.54602 -9.97666 -9.94170 -9.73675 -9.64471 -9.15405 -8.98442 -8.41040 -8.29600 -5.94685 -3.98934 3.15158 3.25722 3.33622 3.39290 3.42204 3.45550 3.86966 4.34259 4.43237 4.48425 4.52368 4.70717 4.72556 4.79274 4.91340 5.00547 5.06165 5.29811 5.40270 5.43379 5.49185 5.53744 5.56688 5.66721 5.72608 5.75172 5.83041 5.90352 6.04867 6.12028 6.24550 6.26633 6.81756 6.91494 6.99697 7.76497 7.88336 7.92373 8.09024 8.40422 8.80643 9.09987 9.64513 11.16321 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.051150 B = 0.002732 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.275093 B =10244.783438 C =10468.648741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.070 3.930 5 C -0.101 4.101 6 C -0.163 4.163 7 C -0.156 4.156 8 C 0.102 3.898 9 H 0.134 0.866 10 N -0.713 5.713 11 C 0.513 3.487 12 O -0.534 6.534 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.094 0.906 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -21.154 -2.242 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.011 3.989 5 C -0.138 4.138 6 C -0.165 4.165 7 C -0.194 4.194 8 C -0.005 4.005 9 H 0.152 0.848 10 N -0.364 5.364 11 C 0.302 3.698 12 O -0.408 6.408 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.154 4.154 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.676 -20.789 -1.287 26.682 hybrid contribution 0.369 0.320 -1.093 1.197 sum -16.307 -20.468 -2.381 26.278 Atomic orbital electron populations 1.21742 0.93752 1.02174 1.03212 1.22522 0.95576 0.83989 0.99969 1.87925 1.19725 1.25996 1.94554 1.22887 0.81572 0.97477 0.96928 1.22694 1.01438 0.94424 0.95233 1.22598 1.06060 0.89848 0.97979 1.23290 0.93966 0.99200 1.02978 1.21508 0.92757 0.91775 0.94428 0.84831 1.45599 1.40654 1.39729 1.10433 1.21593 0.77779 0.79242 0.91182 1.90659 1.60955 1.67606 1.21629 1.21872 1.00687 0.97918 0.96463 1.18910 0.92145 0.93282 0.95782 1.21264 1.20424 1.20273 0.94462 0.92544 1.25037 0.96820 0.97288 0.95339 1.70010 1.29793 1.36022 1.17006 0.86530 0.79058 0.80374 0.81958 1.19761 1.21025 1.21038 1.22994 1.01426 0.93409 0.97607 0.91173 0.91812 0.91846 0.93424 0.93429 0.90825 0.90498 0.88381 0.88215 0.88475 0.76849 0.90193 0.90210 0.95800 0.95784 0.93016 0.88783 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.40 6.50 37.16 0.24 0.64 16 3 O -0.36 -3.59 10.28 -35.23 -0.36 -3.95 16 4 C 0.07 0.61 4.37 -25.81 -0.11 0.50 16 5 C -0.10 -0.94 7.91 -26.13 -0.21 -1.15 16 6 C -0.16 -1.76 2.95 -154.80 -0.46 -2.22 16 7 C -0.16 -1.77 10.46 -26.94 -0.28 -2.05 16 8 C 0.10 1.38 6.43 -68.15 -0.44 0.94 16 9 H 0.13 2.06 7.40 -51.93 -0.38 1.68 16 10 N -0.71 -10.48 5.55 -54.02 -0.30 -10.78 16 11 C 0.51 10.08 7.83 -10.99 -0.09 10.00 16 12 O -0.53 -12.82 15.55 5.56 0.09 -12.73 16 13 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 14 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.12 -1.10 7.93 -26.14 -0.21 -1.30 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 4.73 8.83 -40.82 -0.36 4.37 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -34.21 346.83 -8.52 -42.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.03 Total: 0.54 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.85 Total: -10.92 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.44 Total: -37.69 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.28 Total: -16.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.21 -8.52 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874805733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.128 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds