Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46785 * 2 1 4 4 C 1.42899 * 113.99975 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58858 * 210.00022 * 4 3 2 6 6 C 1.53255 * 86.88077 * 220.34801 * 5 4 3 7 7 C 1.52463 * 128.58200 * 165.11323 * 6 5 4 8 8 C 1.52594 * 128.57898 * 245.01071 * 6 5 4 9 9 H 1.09004 * 117.50465 * 349.86081 * 8 6 5 10 10 N 1.46499 * 117.53763 * 134.99243 * 8 6 5 11 11 C 1.34779 * 120.00164 * 204.83234 * 10 8 6 12 12 O 1.21285 * 119.99377 * 359.97438 * 11 10 8 13 13 C 1.50693 * 120.00274 * 179.97438 * 11 10 8 14 14 H 1.09002 * 109.47379 * 59.99640 * 13 11 10 15 15 C 1.52999 * 109.47157 * 299.99796 * 13 11 10 16 16 C 1.50696 * 109.47413 * 179.97438 * 13 11 10 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00537 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99450 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00417 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47077 * 119.99895 * 20 18 16 23 23 H 1.48497 * 109.47253 * 240.00034 * 20 18 16 24 24 C 1.53253 * 87.69411 * 25.08346 * 6 5 4 25 25 H 1.08993 * 109.47460 * 59.99932 * 1 2 3 26 26 H 1.09006 * 109.46589 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47056 * 299.99526 * 1 2 3 28 28 H 1.09005 * 109.47056 * 240.00474 * 2 1 3 29 29 H 1.08993 * 109.47460 * 120.00068 * 2 1 3 30 30 H 1.08996 * 112.82782 * 341.11292 * 4 3 2 31 31 H 1.08999 * 113.64506 * 105.84412 * 5 4 3 32 32 H 1.08997 * 113.64257 * 334.84719 * 5 4 3 33 33 H 1.09002 * 117.51344 * 225.04691 * 7 6 5 34 34 H 1.08998 * 117.51392 * 10.11018 * 7 6 5 35 35 H 0.97004 * 120.00047 * 24.82550 * 10 8 6 36 36 H 1.09006 * 109.47256 * 299.99881 * 15 13 11 37 37 H 1.09002 * 109.47122 * 60.00078 * 15 13 11 38 38 H 1.09004 * 109.47223 * 179.97438 * 15 13 11 39 39 H 0.97005 * 120.00025 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.64538 * 89.41628 * 24 6 5 41 41 H 1.09011 * 113.64293 * 220.41621 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9485 2.7264 0.7046 6 6 4.9783 2.8333 -0.4254 7 6 5.8515 4.0235 -0.8065 8 6 6.4973 2.7149 -0.3428 9 1 6.9479 2.6996 0.6496 10 7 7.1689 1.8958 -1.3550 11 6 8.3675 1.3412 -1.0863 12 8 8.8903 1.5206 -0.0068 13 6 9.0580 0.4982 -2.1272 14 1 9.2394 1.0983 -3.0189 15 6 8.1710 -0.6952 -2.4875 16 6 10.3716 0.0014 -1.5808 17 1 10.6762 0.2698 -0.5800 18 6 11.1852 -0.7947 -2.3589 19 7 10.8145 -1.1209 -3.5777 20 14 12.8138 -1.4098 -1.6818 21 1 12.9961 -0.9060 -0.2968 22 1 12.8167 -2.8948 -1.6722 23 1 13.9232 -0.9181 -2.5378 24 6 4.0036 2.0424 -1.3048 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9276 0.5461 0.3243 31 1 4.3904 2.5327 1.6820 32 1 3.2283 3.5443 0.7186 33 1 5.9264 4.2748 -1.8645 34 1 5.8780 4.8692 -0.1193 35 1 6.7508 1.7526 -2.2185 36 1 7.9896 -1.2954 -1.5958 37 1 7.2210 -0.3356 -2.8829 38 1 8.6703 -1.3048 -3.2407 39 1 11.3866 -1.6814 -4.1251 40 1 3.2988 2.6701 -1.8500 41 1 4.4899 1.3004 -1.9383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874809577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -45.643996 kcal Electronic energy + Delta-G solvation = -20328.932809 eV Core-core repulsion = 17210.249857 eV Total energy + Delta-G solvation = -3118.682952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09305 -38.59380 -37.18332 -34.09416 -33.74077 -31.81064 -30.74980 -29.92326 -25.88664 -25.15071 -23.35243 -23.08833 -22.29388 -21.35607 -19.47579 -18.50400 -17.01838 -16.38962 -16.15096 -15.84210 -15.55167 -15.08315 -14.39816 -14.13546 -14.05651 -13.60568 -13.15314 -12.95725 -12.59469 -12.43077 -12.37238 -12.34904 -11.82300 -11.57017 -11.46991 -11.21436 -11.03605 -10.87919 -10.70824 -10.66148 -10.52202 -10.25275 -9.99271 -9.71330 -9.50978 -8.97710 -8.64900 -8.34564 -8.23926 -6.04249 -4.07320 3.31831 3.39063 3.40035 3.47377 3.57655 3.67307 4.12287 4.44295 4.47927 4.58915 4.68564 4.79543 4.88123 4.93058 5.06634 5.14785 5.21549 5.29390 5.45425 5.66053 5.68569 5.68699 5.69056 5.79685 5.83823 5.87125 6.02172 6.04717 6.20449 6.35871 6.59429 6.80337 6.89964 7.07700 7.15487 7.45766 7.73883 7.97830 8.12767 8.42333 9.02278 9.20109 9.58442 11.03470 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.003854 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.224924 B = 7263.000295 C = 7861.885970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.378 6.378 4 C 0.068 3.932 5 C -0.091 4.091 6 C -0.178 4.178 7 C -0.174 4.174 8 C 0.124 3.876 9 H 0.134 0.866 10 N -0.717 5.717 11 C 0.523 3.477 12 O -0.543 6.543 13 C 0.029 3.971 14 H 0.053 0.947 15 C -0.132 4.132 16 C -0.500 4.500 17 H 0.075 0.925 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.397 0.603 36 H 0.031 0.969 37 H 0.011 0.989 38 H 0.094 0.906 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 4.842 3.653 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.297 6.297 4 C 0.010 3.990 5 C -0.128 4.128 6 C -0.180 4.180 7 C -0.213 4.213 8 C 0.016 3.984 9 H 0.152 0.848 10 N -0.368 5.368 11 C 0.314 3.686 12 O -0.419 6.419 13 C 0.008 3.992 14 H 0.071 0.929 15 C -0.190 4.190 16 C -0.539 4.539 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.150 4.150 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.231 0.769 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.757 4.988 4.294 18.938 hybrid contribution 0.731 -0.593 -0.254 0.975 sum -17.026 4.395 4.040 18.042 Atomic orbital electron populations 1.21745 0.93956 1.02147 1.02954 1.22506 0.95394 0.84119 1.00205 1.87913 1.20918 1.26207 1.94652 1.23534 0.80449 0.98078 0.96915 1.22688 0.95840 0.97477 0.96817 1.22454 0.92271 1.03246 1.00031 1.23343 1.03125 0.92480 1.02339 1.21415 0.88336 0.93382 0.95229 0.84798 1.45754 1.21606 1.52545 1.16868 1.22045 0.78786 0.77913 0.89901 1.90527 1.64802 1.60554 1.25994 1.18884 0.94758 0.92623 0.92889 0.92925 1.21743 0.95779 0.99817 1.01642 1.21188 1.01219 1.30006 1.01450 0.90690 1.24955 0.98421 0.96093 0.94821 1.69881 1.37551 1.37691 1.08517 0.86396 0.83223 0.78310 0.79329 1.19538 1.21052 1.21041 1.22926 0.96621 0.98765 0.96663 0.91931 0.91221 0.91985 0.93275 0.93389 0.89309 0.90862 0.88903 0.88462 0.88215 0.76873 0.94991 0.97010 0.88793 0.93013 0.89049 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.52 6.50 37.16 0.24 0.76 16 3 O -0.38 -4.43 10.36 -35.23 -0.36 -4.79 16 4 C 0.07 0.78 4.31 -25.81 -0.11 0.67 16 5 C -0.09 -1.00 7.93 -26.13 -0.21 -1.21 16 6 C -0.18 -2.17 3.02 -154.73 -0.47 -2.63 16 7 C -0.17 -2.11 10.45 -26.94 -0.28 -2.39 16 8 C 0.12 1.87 6.44 -68.07 -0.44 1.43 16 9 H 0.13 2.23 7.40 -51.93 -0.38 1.84 16 10 N -0.72 -12.49 5.45 -53.95 -0.29 -12.79 16 11 C 0.52 11.88 7.15 -10.99 -0.08 11.80 16 12 O -0.54 -14.11 15.03 5.55 0.08 -14.03 16 13 C 0.03 0.73 2.64 -92.93 -0.24 0.49 16 14 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 16 C -0.50 -14.18 8.37 -34.44 -0.29 -14.47 16 17 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -25.11 11.32 55.43 0.63 -24.49 16 20 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C -0.11 -1.29 7.91 -26.14 -0.21 -1.50 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.40 6.12 7.95 -40.82 -0.32 5.79 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.84 7.85 -51.92 -0.41 0.43 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -30.78 339.65 -8.11 -38.90 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.80 Total: 4.32 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.47 Total: -9.01 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.33 Total: -37.27 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.28 Total: -18.82 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.78 -8.11 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874809577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.748 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds