Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46785 * 2 1 4 4 C 1.42899 * 113.99975 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58858 * 210.00022 * 4 3 2 6 6 C 1.53255 * 86.88077 * 220.34801 * 5 4 3 7 7 C 1.52463 * 128.58200 * 165.11323 * 6 5 4 8 8 C 1.52594 * 128.57898 * 245.01071 * 6 5 4 9 9 H 1.09004 * 117.50465 * 349.86081 * 8 6 5 10 10 N 1.46499 * 117.53763 * 134.99243 * 8 6 5 11 11 C 1.34779 * 120.00164 * 204.83234 * 10 8 6 12 12 O 1.21285 * 119.99377 * 359.97438 * 11 10 8 13 13 C 1.50693 * 120.00274 * 179.97438 * 11 10 8 14 14 H 1.09002 * 109.47379 * 59.99640 * 13 11 10 15 15 C 1.52999 * 109.47157 * 299.99796 * 13 11 10 16 16 C 1.50696 * 109.47413 * 179.97438 * 13 11 10 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00537 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99450 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00417 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47077 * 119.99895 * 20 18 16 23 23 H 1.48497 * 109.47253 * 240.00034 * 20 18 16 24 24 C 1.53253 * 87.69411 * 25.08346 * 6 5 4 25 25 H 1.08993 * 109.47460 * 59.99932 * 1 2 3 26 26 H 1.09006 * 109.46589 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47056 * 299.99526 * 1 2 3 28 28 H 1.09005 * 109.47056 * 240.00474 * 2 1 3 29 29 H 1.08993 * 109.47460 * 120.00068 * 2 1 3 30 30 H 1.08996 * 112.82782 * 341.11292 * 4 3 2 31 31 H 1.08999 * 113.64506 * 105.84412 * 5 4 3 32 32 H 1.08997 * 113.64257 * 334.84719 * 5 4 3 33 33 H 1.09002 * 117.51344 * 225.04691 * 7 6 5 34 34 H 1.08998 * 117.51392 * 10.11018 * 7 6 5 35 35 H 0.97004 * 120.00047 * 24.82550 * 10 8 6 36 36 H 1.09006 * 109.47256 * 299.99881 * 15 13 11 37 37 H 1.09002 * 109.47122 * 60.00078 * 15 13 11 38 38 H 1.09004 * 109.47223 * 179.97438 * 15 13 11 39 39 H 0.97005 * 120.00025 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.64538 * 89.41628 * 24 6 5 41 41 H 1.09011 * 113.64293 * 220.41621 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9485 2.7264 0.7046 6 6 4.9783 2.8333 -0.4254 7 6 5.8515 4.0235 -0.8065 8 6 6.4973 2.7149 -0.3428 9 1 6.9479 2.6996 0.6496 10 7 7.1689 1.8958 -1.3550 11 6 8.3675 1.3412 -1.0863 12 8 8.8903 1.5206 -0.0068 13 6 9.0580 0.4982 -2.1272 14 1 9.2394 1.0983 -3.0189 15 6 8.1710 -0.6952 -2.4875 16 6 10.3716 0.0014 -1.5808 17 1 10.6762 0.2698 -0.5800 18 6 11.1852 -0.7947 -2.3589 19 7 10.8145 -1.1209 -3.5777 20 14 12.8138 -1.4098 -1.6818 21 1 12.9961 -0.9060 -0.2968 22 1 12.8167 -2.8948 -1.6722 23 1 13.9232 -0.9181 -2.5378 24 6 4.0036 2.0424 -1.3048 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9276 0.5461 0.3243 31 1 4.3904 2.5327 1.6820 32 1 3.2283 3.5443 0.7186 33 1 5.9264 4.2748 -1.8645 34 1 5.8780 4.8692 -0.1193 35 1 6.7508 1.7526 -2.2185 36 1 7.9896 -1.2954 -1.5958 37 1 7.2210 -0.3356 -2.8829 38 1 8.6703 -1.3048 -3.2407 39 1 11.3866 -1.6814 -4.1251 40 1 3.2988 2.6701 -1.8500 41 1 4.4899 1.3004 -1.9383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874809577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -64.764938 kcal Electronic energy + Delta-G solvation = -20329.761955 eV Core-core repulsion = 17210.249857 eV Total energy + Delta-G solvation = -3119.512098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23085 -40.10927 -38.20974 -35.79068 -35.32246 -33.25317 -32.00806 -31.26649 -27.21752 -26.79602 -25.02681 -23.80971 -23.23788 -22.71581 -21.17952 -19.59977 -18.34044 -17.87611 -17.70110 -17.20652 -16.60769 -16.46694 -15.95238 -15.75446 -15.10392 -14.97319 -14.50675 -14.36070 -13.81929 -13.56326 -13.45381 -13.28680 -13.10784 -12.98193 -12.75425 -12.67823 -12.59233 -12.28249 -12.22966 -12.07994 -12.03220 -11.92325 -11.43295 -11.05104 -10.77806 -10.60411 -10.37549 -10.30659 -9.62405 -8.16229 -6.26582 1.39091 1.41186 1.54614 1.82287 2.22396 2.46888 2.62509 3.02007 3.13773 3.46388 3.60898 3.74606 3.76915 4.03126 4.10213 4.20317 4.23221 4.40141 4.51450 4.69084 4.72475 4.76848 4.82150 4.83984 4.88526 4.90870 4.96172 5.02398 5.04786 5.09225 5.15256 5.25589 5.31017 5.48090 5.62995 5.74175 5.93285 6.19865 6.32489 6.71190 6.84741 7.38724 7.51859 8.89836 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.003854 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.224924 B = 7263.000295 C = 7861.885970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.389 6.389 4 C 0.065 3.935 5 C -0.087 4.087 6 C -0.161 4.161 7 C -0.152 4.152 8 C 0.086 3.914 9 H 0.114 0.886 10 N -0.695 5.695 11 C 0.525 3.475 12 O -0.585 6.585 13 C 0.025 3.975 14 H 0.042 0.958 15 C -0.118 4.118 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.109 4.109 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.409 0.591 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.265 0.735 40 H 0.103 0.897 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 5.240 3.263 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.308 6.308 4 C 0.008 3.992 5 C -0.124 4.124 6 C -0.163 4.163 7 C -0.191 4.191 8 C -0.020 4.020 9 H 0.131 0.869 10 N -0.346 5.346 11 C 0.315 3.685 12 O -0.465 6.465 13 C 0.004 3.996 14 H 0.060 0.940 15 C -0.176 4.176 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.147 4.147 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.245 0.755 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.385 5.400 3.871 20.492 hybrid contribution 1.138 -0.697 -0.140 1.342 sum -18.247 4.704 3.731 19.209 Atomic orbital electron populations 1.21752 0.92574 1.03291 1.02842 1.22699 0.96580 0.83269 1.00467 1.87894 1.20711 1.27504 1.94705 1.23514 0.80685 0.98036 0.97009 1.22726 0.95468 0.97730 0.96488 1.22393 0.90346 1.02522 1.00991 1.23428 1.00524 0.91821 1.03298 1.21507 0.90396 0.96085 0.94006 0.86859 1.45367 1.19925 1.51496 1.17809 1.21570 0.80121 0.78065 0.88743 1.90502 1.66338 1.62298 1.27340 1.18808 0.94377 0.93566 0.92874 0.94018 1.21550 0.96944 0.98562 1.00579 1.21319 1.03504 1.31218 1.00711 0.93350 1.25595 1.01208 0.96006 0.95139 1.69954 1.38455 1.37645 1.08977 0.85539 0.79836 0.78225 0.78268 1.20458 1.19883 1.19953 1.22965 0.96404 0.98677 0.96620 0.92060 0.89495 0.92040 0.93124 0.93061 0.89947 0.90720 0.87567 0.87448 0.86454 0.75477 0.95840 0.93101 0.91013 0.92575 0.87867 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.80 6.50 71.98 0.47 1.27 16 3 O -0.39 -8.38 10.36 -148.98 -1.54 -9.92 16 4 C 0.07 1.39 4.31 31.19 0.13 1.52 16 5 C -0.09 -1.73 7.93 30.98 0.25 -1.49 16 6 C -0.16 -3.56 3.02 -52.33 -0.16 -3.72 16 7 C -0.15 -3.31 10.45 30.46 0.32 -2.99 16 8 C 0.09 2.53 6.44 44.90 0.29 2.82 16 9 H 0.11 3.84 7.40 -2.38 -0.02 3.82 16 10 N -0.70 -23.83 5.45 -442.98 -2.41 -26.25 16 11 C 0.53 24.24 7.15 87.65 0.63 24.87 16 12 O -0.59 -31.47 15.03 -3.04 -0.05 -31.52 16 13 C 0.02 1.26 2.64 -12.29 -0.03 1.22 16 14 H 0.04 2.17 8.14 -2.39 -0.02 2.16 16 15 C -0.12 -5.36 8.87 71.98 0.64 -4.73 16 16 C -0.53 -30.81 8.37 25.60 0.21 -30.60 16 17 H 0.05 3.02 6.75 -2.91 -0.02 3.01 16 18 C 0.02 1.10 5.30 84.65 0.45 1.55 16 19 N -0.91 -51.06 11.32 21.45 0.24 -50.82 16 20 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.11 -2.25 7.91 30.98 0.25 -2.00 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.84 7.87 -2.39 -0.02 1.83 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.41 11.96 7.95 -92.70 -0.74 11.22 16 36 H 0.02 1.05 8.14 -2.38 -0.02 1.04 16 37 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 38 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 39 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 1.46 7.85 -2.38 -0.02 1.44 16 Total: -1.00 -66.92 339.65 2.72 -64.20 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.27 Total: 20.78 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.18 Total: -13.52 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.17 Total: -77.06 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.59 Total: -41.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.92 2.72 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874809577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.564 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds