Wall clock time and date at job start Mon Mar 30 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47212 * 2 1 4 4 C 1.42898 * 113.99849 * 180.02562 * 3 2 1 5 5 C 1.53890 * 113.58461 * 209.99649 * 4 3 2 6 6 C 1.53258 * 86.88361 * 220.42686 * 5 4 3 7 7 C 1.52462 * 128.58549 * 245.05720 * 6 5 4 8 8 C 1.52461 * 128.58776 * 165.11102 * 6 5 4 9 9 H 1.09008 * 117.54491 * 10.17106 * 8 6 5 10 10 N 1.46499 * 117.51586 * 225.05405 * 8 6 5 11 11 C 1.34777 * 120.00199 * 155.14684 * 10 8 6 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 8 14 14 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 15 15 C 1.53000 * 109.47245 * 59.72201 * 13 11 10 16 16 C 1.50700 * 109.46869 * 179.72354 * 13 11 10 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99656 * 179.97438 * 16 13 11 19 19 N 1.31512 * 119.99866 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 120.00085 * 359.97438 * 18 16 13 21 21 H 1.48506 * 109.47050 * 90.00069 * 20 18 16 22 22 H 1.48500 * 109.47345 * 209.99734 * 20 18 16 23 23 H 1.48494 * 109.47213 * 330.00170 * 20 18 16 24 24 C 1.53256 * 87.69059 * 25.08497 * 6 5 4 25 25 H 1.08998 * 109.47121 * 59.99960 * 1 2 3 26 26 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.46988 * 300.00013 * 1 2 3 28 28 H 1.09000 * 109.47210 * 239.99615 * 2 1 3 29 29 H 1.09005 * 109.47623 * 119.99616 * 2 1 3 30 30 H 1.08996 * 112.83416 * 341.11106 * 4 3 2 31 31 H 1.09001 * 113.64976 * 105.93241 * 5 4 3 32 32 H 1.08998 * 113.73282 * 334.93750 * 5 4 3 33 33 H 1.09001 * 117.51465 * 134.94654 * 7 6 5 34 34 H 1.09001 * 117.54646 * 349.83324 * 7 6 5 35 35 H 0.97000 * 119.99484 * 335.13781 * 10 8 6 36 36 H 1.09001 * 109.46739 * 299.99817 * 15 13 11 37 37 H 1.08996 * 109.46783 * 59.99559 * 15 13 11 38 38 H 1.08994 * 109.47175 * 180.02562 * 15 13 11 39 39 H 0.97000 * 119.99789 * 179.97438 * 19 18 16 40 40 H 1.08996 * 113.64521 * 89.41926 * 24 6 5 41 41 H 1.09004 * 113.64515 * 220.41654 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9485 2.7262 0.7045 6 6 4.9770 2.8343 -0.4266 7 6 6.4949 2.7159 -0.3461 8 6 5.8492 4.0251 -0.8082 9 1 5.8770 4.8705 -0.1206 10 7 5.9480 4.3635 -2.2302 11 6 6.2520 5.6223 -2.6038 12 8 6.4433 6.4750 -1.7628 13 6 6.3475 5.9718 -4.0666 14 1 7.1245 5.3673 -4.5346 15 6 5.0056 5.6928 -4.7464 16 6 6.6908 7.4319 -4.2128 17 1 6.8258 8.0455 -3.3344 18 6 6.8324 7.9844 -5.4680 19 7 7.1315 9.2587 -5.5957 20 14 6.5997 6.9229 -6.9874 21 1 5.1746 6.9602 -7.4037 22 1 7.4507 7.4412 -8.0885 23 1 6.9885 5.5236 -6.6780 24 6 4.0019 2.0432 -1.3052 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9276 0.5459 0.3243 31 1 4.3917 2.5325 1.6813 32 1 3.2289 3.5447 0.7207 33 1 6.9932 2.1066 -1.1001 34 1 6.9474 2.7001 0.6455 35 1 5.7947 3.6816 -2.9027 36 1 4.7574 4.6367 -4.6406 37 1 4.2286 6.2972 -4.2783 38 1 5.0748 5.9451 -5.8044 39 1 7.2315 9.6473 -6.4788 40 1 3.2961 2.6707 -1.8494 41 1 4.4878 1.3018 -1.9396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874809578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:44 Heat of formation + Delta-G solvation = -59.659441 kcal Electronic energy + Delta-G solvation = -20264.610245 eV Core-core repulsion = 17145.319538 eV Total energy + Delta-G solvation = -3119.290707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22973 -40.18406 -38.21078 -35.81250 -35.38223 -33.58494 -32.40038 -31.30590 -27.12665 -26.78577 -25.24261 -23.80543 -23.45442 -22.50558 -21.19082 -19.45925 -18.81875 -18.16869 -17.46523 -17.29530 -16.54263 -16.50225 -15.98539 -15.91034 -15.07035 -14.95005 -14.71191 -14.50964 -14.09860 -13.83302 -13.60999 -13.44596 -13.17001 -12.96874 -12.91485 -12.77435 -12.54815 -12.24460 -12.15235 -11.97796 -11.81434 -11.47032 -11.44507 -11.23586 -10.93175 -10.77418 -10.46623 -10.33768 -9.56005 -8.27379 -6.35622 1.33492 1.40124 1.51547 1.77446 2.20951 2.34625 2.67965 2.97001 3.06424 3.49669 3.68484 3.77908 3.81944 3.91523 4.06464 4.16408 4.23992 4.41016 4.43644 4.54355 4.57340 4.62973 4.74232 4.78656 4.83840 4.86980 4.87369 4.94287 5.03360 5.06752 5.09320 5.17864 5.26038 5.35260 5.43442 5.51889 5.63540 6.26203 6.40883 6.66890 6.84335 7.25818 7.48925 8.90601 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.003846 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.229557 B = 7278.299163 C = 7878.960621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.076 3.924 5 C -0.097 4.097 6 C -0.160 4.160 7 C -0.135 4.135 8 C 0.069 3.931 9 H 0.105 0.895 10 N -0.691 5.691 11 C 0.529 3.471 12 O -0.585 6.585 13 C -0.007 4.007 14 H 0.072 0.928 15 C -0.139 4.139 16 C -0.523 4.523 17 H 0.028 0.972 18 C 0.005 3.995 19 N -0.954 5.954 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.299 1.299 23 H -0.229 1.229 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.268 0.732 40 H 0.079 0.921 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 -26.569 8.868 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.320 6.320 4 C 0.018 3.982 5 C -0.135 4.135 6 C -0.162 4.162 7 C -0.173 4.173 8 C -0.037 4.037 9 H 0.123 0.877 10 N -0.342 5.342 11 C 0.318 3.682 12 O -0.464 6.464 13 C -0.028 4.028 14 H 0.089 0.911 15 C -0.196 4.196 16 C -0.561 4.561 17 H 0.046 0.954 18 C -0.191 4.191 19 N -0.594 5.594 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.227 1.227 23 H -0.152 1.152 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.406 -25.660 9.358 28.887 hybrid contribution 0.186 0.372 -0.841 0.938 sum -9.220 -25.287 8.517 28.231 Atomic orbital electron populations 1.21784 0.93518 1.03253 1.02430 1.22700 0.95988 0.83057 1.00976 1.87955 1.21381 1.27983 1.94657 1.23544 0.80529 0.98103 0.96003 1.22751 0.95679 0.97787 0.97238 1.22468 0.92366 1.00606 1.00728 1.23462 0.91870 0.97861 1.04118 1.21468 1.05776 0.92800 0.83658 0.87706 1.45236 1.71414 1.10530 1.06988 1.21101 0.73714 0.81337 0.92016 1.90561 1.50981 1.49945 1.54923 1.19256 0.97336 0.96751 0.89491 0.91065 1.22014 0.96467 1.01570 0.99553 1.21108 1.47703 0.94054 0.93284 0.95368 1.26065 0.93931 0.96336 1.02771 1.70082 1.50153 1.14417 1.24738 0.85677 0.78280 0.80389 0.77040 1.18655 1.22677 1.15158 1.22980 0.96373 0.98614 0.97037 0.92735 0.89176 0.92505 0.92484 0.92142 0.87098 0.89255 0.90494 0.86634 0.86379 0.75056 0.89695 0.93756 0.93425 0.92364 0.90247 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.65 6.50 71.98 0.47 1.12 16 3 O -0.40 -7.86 10.35 -148.98 -1.54 -9.40 16 4 C 0.08 1.24 4.31 31.19 0.13 1.38 16 5 C -0.10 -1.83 7.93 30.98 0.25 -1.59 16 6 C -0.16 -3.21 3.01 -52.37 -0.16 -3.37 16 7 C -0.13 -2.53 10.46 30.46 0.32 -2.21 16 8 C 0.07 1.94 6.43 44.85 0.29 2.23 16 9 H 0.11 3.60 7.40 -2.38 -0.02 3.58 16 10 N -0.69 -21.95 5.44 -443.18 -2.41 -24.36 16 11 C 0.53 23.73 7.15 87.66 0.63 24.36 16 12 O -0.59 -32.47 15.03 -3.04 -0.05 -32.51 16 13 C -0.01 -0.31 2.23 -12.29 -0.03 -0.34 16 14 H 0.07 3.05 7.20 -2.38 -0.02 3.03 16 15 C -0.14 -5.37 8.57 71.98 0.62 -4.76 16 16 C -0.52 -31.89 8.96 25.60 0.23 -31.66 16 17 H 0.03 2.03 7.00 -2.91 -0.02 2.01 16 18 C 0.01 0.31 5.45 84.65 0.46 0.77 16 19 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 20 Si 0.96 43.37 24.37 68.60 1.67 45.04 16 21 H -0.26 -11.01 6.87 99.48 0.68 -10.33 16 22 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.23 -8.83 6.53 99.48 0.65 -8.18 16 24 C -0.11 -2.00 7.91 30.98 0.24 -1.76 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.11 1.30 7.87 -2.39 -0.02 1.28 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 10.17 8.23 -92.71 -0.76 9.41 16 36 H 0.08 2.39 7.55 -2.39 -0.02 2.38 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.87 3.28 -2.39 -0.01 1.86 16 39 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -80.02 333.37 2.33 -77.69 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.17 Total: 22.27 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.19 Total: -16.91 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.11 Total: -86.17 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.59 Total: -41.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.67 Total: 45.04 kcal Total: -80.02 2.33 -77.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874809578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.026 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds