Wall clock time and date at job start Mon Mar 30 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46498 * 120.00239 * 299.72110 * 12 2 1 14 14 C 1.34777 * 119.99873 * 120.00305 * 12 2 1 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 12 2 17 17 H 1.09004 * 110.38489 * 302.59145 * 16 14 12 18 18 O 1.44628 * 110.43801 * 180.02562 * 16 14 12 19 19 C 1.44623 * 104.50988 * 198.49712 * 18 16 14 20 20 C 1.54560 * 104.47712 * 42.75359 * 19 18 16 21 21 H 1.09001 * 112.78544 * 212.75989 * 20 19 18 22 22 C 1.54128 * 108.76236 * 87.53602 * 20 19 18 23 23 C 1.54828 * 104.36866 * 225.08766 * 22 20 19 24 24 C 1.54827 * 102.73214 * 38.27047 * 23 22 20 25 25 C 1.54123 * 104.37200 * 321.72712 * 24 23 22 26 26 H 1.09005 * 112.70321 * 260.17312 * 25 24 23 27 27 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 29 29 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 30 30 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 32 32 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 34 34 H 1.09002 * 110.43553 * 284.00262 * 19 18 16 35 35 H 1.09008 * 110.54031 * 161.55204 * 19 18 16 36 36 H 1.09000 * 110.44953 * 343.80594 * 22 20 19 37 37 H 1.08992 * 110.45614 * 106.36408 * 22 20 19 38 38 H 1.09007 * 110.75609 * 156.57891 * 23 22 20 39 39 H 1.08992 * 110.75967 * 279.77413 * 23 22 20 40 40 H 1.08994 * 110.44877 * 202.99831 * 24 23 22 41 41 H 1.09003 * 110.44986 * 80.44711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 1.6693 -2.0949 -1.4251 14 6 2.7931 -0.0356 -2.0834 15 8 3.0858 1.1256 -1.8916 16 6 3.2958 -0.7461 -3.3136 17 1 3.8660 -1.6321 -3.0341 18 8 4.1034 0.1450 -4.1169 19 6 4.1396 -0.4764 -5.4223 20 6 2.6884 -0.9496 -5.6653 21 1 2.6361 -1.8653 -6.2543 22 6 1.8917 0.2036 -6.3063 23 6 0.5542 0.2264 -5.5267 24 6 0.9994 -0.0817 -4.0762 25 6 2.1156 -1.1327 -4.2337 26 1 1.7651 -2.1490 -4.0530 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7083 1.1608 3.4844 31 1 0.7413 -2.1506 -1.9941 32 1 2.4683 -2.5814 -1.9844 33 1 1.5385 -2.5976 -0.4667 34 1 4.8218 -1.3265 -5.4204 35 1 4.4362 0.2468 -6.1821 36 1 2.4215 1.1480 -6.1815 37 1 1.7135 0.0024 -7.3626 38 1 0.0885 1.2101 -5.5873 39 1 -0.1224 -0.5433 -5.8979 40 1 0.1686 -0.4913 -3.5018 41 1 1.3877 0.8176 -3.5979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879103908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:54 Heat of formation + Delta-G solvation = -81.643342 kcal Electronic energy + Delta-G solvation = -22017.098882 eV Core-core repulsion = 18896.854882 eV Total energy + Delta-G solvation = -3120.244001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76900 -38.30475 -35.71704 -35.10718 -32.95631 -30.95894 -29.65474 -28.87495 -26.36268 -25.84585 -25.21093 -23.45666 -21.46377 -20.41900 -19.77180 -18.26215 -16.85602 -16.58178 -16.12982 -15.56809 -15.21166 -14.78467 -14.42635 -14.31211 -14.17946 -13.62267 -13.32689 -12.59757 -12.42802 -12.02631 -11.68981 -11.58725 -11.47377 -11.32519 -11.11042 -11.04742 -11.01999 -10.87877 -10.77109 -10.72172 -10.68909 -10.50167 -10.22377 -10.15850 -9.61161 -9.16830 -8.78241 -8.40508 -7.57381 -6.06344 -4.14348 3.27913 3.31579 3.34848 3.38410 3.59044 4.21947 4.31326 4.41872 4.53945 4.80800 5.06553 5.10803 5.23858 5.25614 5.26519 5.42288 5.43839 5.50470 5.54823 5.68069 5.73346 5.77333 5.80134 5.92973 6.00847 6.08186 6.21024 6.27645 6.36839 6.49585 6.73382 6.80147 6.87835 7.08161 7.45187 7.55222 7.72564 8.03498 8.20905 8.53119 8.84697 9.08393 9.52136 10.98954 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.005391 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.253514 B = 5192.760042 C = 5441.198310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.082 3.918 14 C 0.516 3.484 15 O -0.535 6.535 16 C 0.058 3.942 17 H 0.085 0.915 18 O -0.340 6.340 19 C 0.044 3.956 20 C -0.124 4.124 21 H 0.092 0.908 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.110 4.110 26 H 0.097 0.903 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -7.037 -16.252 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.004 4.004 17 H 0.103 0.897 18 O -0.257 6.257 19 C -0.034 4.034 20 C -0.143 4.143 21 H 0.110 0.890 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.129 4.129 26 H 0.115 0.885 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.141 -6.077 -15.907 17.029 hybrid contribution 0.261 -0.881 0.821 1.232 sum 0.402 -6.958 -15.086 16.618 Atomic orbital electron populations 1.22069 0.98116 0.99343 1.00779 1.18930 0.90860 0.94513 0.79701 0.91946 1.21321 1.31824 1.13044 0.90317 0.92246 1.24890 0.94925 0.94989 0.98954 1.69882 1.36282 1.22625 1.23744 0.86493 0.78665 0.79823 0.82375 1.20610 1.21141 1.19942 1.48131 1.49170 1.11422 1.23384 1.21682 0.98705 0.83409 1.02430 1.19761 0.79462 0.87174 0.83421 1.90681 1.57606 1.16789 1.76186 1.23064 0.92315 0.92981 0.92003 0.89737 1.89418 1.70705 1.44948 1.20652 1.23573 0.95450 0.97790 0.86538 1.23227 0.95673 0.99172 0.96221 0.89015 1.22404 0.96162 0.98241 0.98575 1.22454 0.96747 1.01389 0.95230 1.22511 0.97483 0.99150 0.96923 1.23181 0.95712 1.00443 0.93558 0.88482 0.95190 0.88888 0.96996 0.92686 0.93718 0.93079 0.90002 0.92502 0.88847 0.90929 0.91828 0.91552 0.91715 0.91149 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.66 2.64 -69.08 -0.18 6.47 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.23 7.98 -34.44 -0.27 -14.50 16 5 H 0.06 1.58 7.31 -52.49 -0.38 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.52 2.69 -175.27 -0.47 -12.99 16 13 C 0.08 1.34 8.04 59.85 0.48 1.82 16 14 C 0.52 11.15 4.90 -10.99 -0.05 11.10 16 15 O -0.54 -14.14 15.57 -13.60 -0.21 -14.35 16 16 C 0.06 0.95 2.54 -27.07 -0.07 0.89 16 17 H 0.09 1.25 7.29 -51.93 -0.38 0.87 16 18 O -0.34 -5.94 10.96 -54.38 -0.60 -6.53 16 19 C 0.04 0.52 6.85 37.98 0.26 0.78 16 20 C -0.12 -1.33 4.04 -88.00 -0.36 -1.69 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.12 -1.24 6.26 -25.18 -0.16 -1.40 16 23 C -0.12 -1.40 6.90 -24.80 -0.17 -1.57 16 24 C -0.12 -1.80 5.49 -25.18 -0.14 -1.94 16 25 C -0.11 -1.43 2.83 -88.00 -0.25 -1.68 16 26 H 0.10 1.06 7.14 -51.93 -0.37 0.69 16 27 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.64 7.57 -51.93 -0.39 0.25 16 32 H 0.05 0.69 6.02 -51.93 -0.31 0.37 16 33 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.97 7.75 -51.92 -0.40 0.57 16 36 H 0.07 0.87 7.58 -51.93 -0.39 0.48 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 41 H 0.08 1.53 6.14 -51.93 -0.32 1.21 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -32.04 313.58 -8.08 -40.12 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.47 Total: 0.69 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.67 Total: -3.14 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.16 Total: -37.56 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.81 Total: -20.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.04 -8.08 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879103908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.523 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds