Wall clock time and date at job start Mon Mar 30 2020 00:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08991 * 109.47333 * 2 1 4 4 C 1.50700 * 109.46966 * 120.00660 * 2 1 3 5 5 H 1.07997 * 120.00598 * 119.99528 * 4 2 1 6 6 C 1.37881 * 119.99749 * 299.99648 * 4 2 1 7 7 N 1.31516 * 120.00028 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47342 * 59.99447 * 8 6 4 10 10 H 1.48502 * 109.47411 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46955 * 300.00116 * 8 6 4 12 12 C 1.50702 * 109.46951 * 240.00107 * 2 1 3 13 13 O 1.21278 * 119.99843 * 248.57508 * 12 2 1 14 14 N 1.34774 * 119.99893 * 68.57672 * 12 2 1 15 15 C 1.47154 * 120.98436 * 4.06128 * 14 12 2 16 16 C 1.53293 * 108.38123 * 129.48680 * 15 14 12 17 17 O 1.42958 * 109.22280 * 52.30851 * 16 15 14 18 18 C 1.42961 * 114.16762 * 297.41565 * 17 16 15 19 19 C 1.47149 * 120.98166 * 184.08862 * 14 12 2 20 20 H 1.09007 * 109.71503 * 110.76934 * 19 14 12 21 21 C 1.53002 * 109.68461 * 350.23629 * 19 14 12 22 22 C 1.52999 * 109.47336 * 181.34506 * 21 19 14 23 23 C 1.53001 * 117.49560 * 173.57591 * 22 21 19 24 24 C 1.52999 * 60.03262 * 107.49796 * 23 22 21 25 25 H 1.08997 * 109.46627 * 305.76861 * 1 2 3 26 26 H 1.08995 * 109.46806 * 65.76374 * 1 2 3 27 27 H 1.08996 * 109.47102 * 185.76336 * 1 2 3 28 28 H 0.97003 * 120.00310 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.67624 * 9.76468 * 15 14 12 30 30 H 1.09000 * 109.68350 * 249.21253 * 15 14 12 31 31 H 1.08997 * 109.51605 * 292.38028 * 16 15 14 32 32 H 1.09006 * 109.55002 * 172.25176 * 16 15 14 33 33 H 1.09010 * 109.51257 * 302.65838 * 18 17 16 34 34 H 1.08996 * 109.51366 * 182.50979 * 18 17 16 35 35 H 1.08997 * 109.47030 * 61.33823 * 21 19 14 36 36 H 1.08998 * 109.46771 * 301.34502 * 21 19 14 37 37 H 1.08997 * 115.56154 * 27.87860 * 22 21 19 38 38 H 1.08998 * 117.49956 * 359.97438 * 23 22 21 39 39 H 1.09001 * 117.49263 * 215.00314 * 23 22 21 40 40 H 1.08996 * 117.50073 * 107.47814 * 24 23 22 41 41 H 1.09001 * 117.49342 * 252.46888 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.8074 -1.1194 4.0077 10 1 1.8279 -0.4195 5.2204 11 1 1.8279 -2.5201 4.0080 12 6 2.0324 -0.7104 -1.2305 13 8 2.5962 -1.7791 -1.1260 14 7 1.8550 -0.1581 -2.4470 15 6 1.2538 1.1771 -2.5925 16 6 2.1609 2.0198 -3.4964 17 8 2.4158 1.3031 -4.7068 18 6 3.1144 0.0698 -4.5208 19 6 2.2563 -0.8727 -3.6691 20 1 1.3696 -1.1691 -4.2297 21 6 3.0691 -2.1144 -3.2967 22 6 3.5121 -2.8352 -4.5715 23 6 4.4659 -4.0215 -4.4170 24 6 3.0018 -4.2616 -4.7909 25 1 -0.3632 0.6007 0.8338 26 1 -0.3633 0.4218 -0.9371 27 1 -0.3633 -1.0224 0.1032 28 1 0.7090 1.1613 3.4845 29 1 1.1691 1.6500 -1.6140 30 1 0.2660 1.0877 -3.0444 31 1 3.1029 2.2171 -2.9848 32 1 1.6682 2.9639 -3.7292 33 1 4.0599 0.2600 -4.0128 34 1 3.3071 -0.3894 -5.4903 35 1 2.4544 -2.7842 -2.6955 36 1 3.9473 -1.8155 -2.7245 37 1 3.6332 -2.2032 -5.4513 38 1 4.7781 -4.2882 -3.4073 39 1 5.2148 -4.1697 -5.1950 40 1 2.7875 -4.5675 -5.8149 41 1 2.3507 -4.6869 -4.0272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886472404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:45 Heat of formation + Delta-G solvation = -63.097959 kcal Electronic energy + Delta-G solvation = -21641.951686 eV Core-core repulsion = 18522.511874 eV Total energy + Delta-G solvation = -3119.439813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65141 -39.24305 -38.37483 -35.96168 -35.63660 -33.75276 -32.06391 -29.55194 -27.42984 -27.24120 -25.07496 -24.12501 -23.24413 -22.45272 -21.31838 -19.99676 -18.36162 -17.76983 -17.45054 -17.17625 -16.62354 -16.33056 -16.13785 -15.83557 -15.71270 -15.09721 -14.64988 -14.42092 -14.16645 -13.91757 -13.50899 -13.15512 -12.88850 -12.88393 -12.72285 -12.58830 -12.37581 -12.29266 -12.19616 -12.15018 -11.93453 -11.80080 -11.18206 -11.06709 -11.04937 -10.76718 -10.55177 -9.77909 -9.37129 -8.17041 -6.26432 1.39107 1.40128 1.48633 1.88763 2.01893 2.43013 2.80107 2.94537 3.13017 3.63956 3.72948 3.94388 4.02642 4.04989 4.11118 4.16805 4.23643 4.33252 4.40975 4.53000 4.65372 4.69135 4.73245 4.78353 4.84615 4.89391 4.92464 4.99521 5.02239 5.08517 5.20497 5.28192 5.42743 5.48384 5.70888 5.71891 5.91317 6.08808 6.17209 6.54722 6.80931 7.38800 7.49610 8.89094 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.006286 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.481870 B = 4453.259097 C = 5588.335432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.029 3.971 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.521 3.479 13 O -0.568 6.568 14 N -0.623 5.623 15 C 0.069 3.931 16 C 0.050 3.950 17 O -0.386 6.386 18 C 0.058 3.942 19 C 0.113 3.887 20 H 0.082 0.918 21 C -0.064 4.064 22 C -0.165 4.165 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.137 0.863 33 H 0.047 0.953 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 0.323 -16.260 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.312 3.688 13 O -0.447 6.447 14 N -0.358 5.358 15 C -0.053 4.053 16 C -0.027 4.027 17 O -0.305 6.305 18 C -0.019 4.019 19 C 0.010 3.990 20 H 0.100 0.900 21 C -0.102 4.102 22 C -0.183 4.183 23 C -0.217 4.217 24 C -0.213 4.213 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.016 -0.046 -16.232 16.356 hybrid contribution 0.297 -0.604 1.658 1.790 sum 2.312 -0.651 -14.573 14.770 Atomic orbital electron populations 1.21572 0.95245 0.99630 1.00961 1.18776 0.95030 0.95821 0.89612 0.94242 1.21244 1.31772 1.12641 0.91126 0.93464 1.25556 0.95184 0.95717 1.01273 1.69938 1.37101 1.23441 1.24368 0.85697 0.78669 0.78696 0.79076 1.20187 1.19832 1.20421 1.21586 0.76972 0.85248 0.84974 1.90545 1.43566 1.24081 1.86492 1.48398 1.62985 1.19137 1.05309 1.22662 0.97795 0.82411 1.02434 1.23121 0.98793 0.95588 0.85240 1.87909 1.77520 1.34315 1.30718 1.23148 0.93290 0.84114 1.01346 1.22004 0.98462 0.92828 0.85659 0.90007 1.21376 0.98946 0.95371 0.94478 1.22617 1.05058 0.91179 0.99459 1.22968 0.93576 1.02607 1.02527 1.23067 0.96779 0.98515 1.02967 0.91070 0.93133 0.96464 0.92573 0.88629 0.89441 0.93219 0.84530 0.93486 0.85160 0.92128 0.93610 0.85547 0.90711 0.86701 0.86663 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.55 71.98 0.62 -4.76 16 2 C 0.03 1.44 1.79 -12.28 -0.02 1.42 16 3 H 0.04 2.03 7.01 -2.39 -0.02 2.02 16 4 C -0.53 -30.67 8.37 25.60 0.21 -30.45 16 5 H 0.05 2.92 6.79 -2.91 -0.02 2.90 16 6 C 0.02 1.24 5.30 84.66 0.45 1.69 16 7 N -0.91 -50.74 11.39 21.45 0.24 -50.50 16 8 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.52 24.04 6.90 87.66 0.60 24.64 16 13 O -0.57 -29.36 11.06 -3.02 -0.03 -29.40 16 14 N -0.62 -22.28 3.02 -793.52 -2.40 -24.67 16 15 C 0.07 1.99 5.13 86.35 0.44 2.43 16 16 C 0.05 1.17 6.98 72.08 0.50 1.67 16 17 O -0.39 -9.68 10.74 -148.98 -1.60 -11.28 16 18 C 0.06 1.43 5.85 72.08 0.42 1.85 16 19 C 0.11 3.41 3.21 44.97 0.14 3.56 16 20 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 21 C -0.06 -2.12 3.46 30.59 0.11 -2.01 16 22 C -0.16 -3.96 5.51 -10.77 -0.06 -4.02 16 23 C -0.18 -4.13 10.25 30.59 0.31 -3.81 16 24 C -0.18 -3.95 10.18 30.62 0.31 -3.64 16 25 H 0.07 3.57 6.25 -2.39 -0.01 3.55 16 26 H 0.05 1.92 6.21 -2.39 -0.01 1.91 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.10 2.98 5.31 -2.39 -0.01 2.97 16 30 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.13 2.38 6.49 -2.39 -0.02 2.37 16 35 H 0.06 2.45 6.06 -2.39 -0.01 2.44 16 36 H 0.05 1.77 7.23 -2.39 -0.02 1.76 16 37 H 0.13 2.35 6.21 -2.39 -0.01 2.34 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 1.98 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -66.30 315.69 3.30 -62.99 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.02 Total: 17.24 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.05 Total: -11.44 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.15 Total: -75.17 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.63 Total: -40.68 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.30 3.30 -62.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886472404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.103 kcal (2) G-P(sol) polarization free energy of solvation -66.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds