Wall clock time and date at job start Mon Mar 30 2020 00:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47168 * 2 1 4 4 C 1.50705 * 109.47105 * 240.00209 * 2 1 3 5 5 H 1.07994 * 119.99845 * 240.00005 * 4 2 1 6 6 C 1.37880 * 119.99807 * 59.99859 * 4 2 1 7 7 N 1.31514 * 119.99773 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99701 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47309 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47030 * 120.00139 * 8 6 4 11 11 H 1.48504 * 109.46949 * 240.00013 * 8 6 4 12 12 C 1.50700 * 109.47359 * 119.99861 * 2 1 3 13 13 O 1.21281 * 119.99406 * 96.85455 * 12 2 1 14 14 N 1.34769 * 120.00314 * 276.85320 * 12 2 1 15 15 C 1.47156 * 120.98075 * 4.83753 * 14 12 2 16 16 C 1.52881 * 108.60890 * 230.49816 * 15 14 12 17 17 O 1.42960 * 109.29428 * 307.93975 * 16 15 14 18 18 C 1.42955 * 114.17342 * 62.44970 * 17 16 15 19 19 C 1.47149 * 120.98217 * 185.11881 * 14 12 2 20 20 H 1.09000 * 109.68206 * 249.20099 * 19 14 12 21 21 C 1.52997 * 109.68497 * 9.72234 * 19 14 12 22 22 C 1.53005 * 109.46903 * 281.57162 * 21 19 14 23 23 C 1.53007 * 117.49708 * 244.75998 * 22 21 19 24 24 C 1.53000 * 117.50093 * 176.09880 * 22 21 19 25 25 H 1.08995 * 109.47018 * 173.80471 * 1 2 3 26 26 H 1.09006 * 109.46524 * 293.80111 * 1 2 3 27 27 H 1.08998 * 109.47224 * 53.80276 * 1 2 3 28 28 H 0.97004 * 119.99569 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.68165 * 350.28228 * 15 14 12 30 30 H 1.08999 * 109.67769 * 110.83576 * 15 14 12 31 31 H 1.08992 * 109.58454 * 187.92467 * 16 15 14 32 32 H 1.08998 * 109.36461 * 67.81646 * 16 15 14 33 33 H 1.08999 * 109.52007 * 177.49363 * 18 17 16 34 34 H 1.09001 * 109.55442 * 57.36536 * 18 17 16 35 35 H 1.08997 * 109.47325 * 41.56268 * 21 19 14 36 36 H 1.08998 * 109.47658 * 161.57214 * 21 19 14 37 37 H 1.08999 * 115.55391 * 30.42275 * 22 21 19 38 38 H 1.09000 * 117.49550 * 359.97438 * 23 22 21 39 39 H 1.09001 * 117.49882 * 145.01887 * 23 22 21 40 40 H 1.09001 * 117.49981 * 214.97766 * 24 22 21 41 41 H 1.09005 * 117.49404 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 3.1464 -2.2868 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0324 -0.7104 1.2305 13 8 2.3527 -1.8784 1.1679 14 7 2.1258 -0.0477 2.4003 15 6 1.6450 1.3373 2.5267 16 6 2.7511 2.1818 3.1597 17 8 3.1967 1.5514 4.3630 18 6 3.7758 0.2592 4.1670 19 6 2.7170 -0.6857 3.5871 20 1 1.9411 -0.8688 4.3304 21 6 3.3713 -2.0100 3.1883 22 6 2.2926 -3.0826 3.0243 23 6 2.3184 -4.2648 3.9954 24 6 2.7373 -4.4629 2.5364 25 1 -0.3633 -1.0216 -0.1109 26 1 -0.3632 0.4148 0.9403 27 1 -0.3633 0.6069 -0.8293 28 1 0.7088 1.1615 -3.4843 29 1 1.4014 1.7328 1.5407 30 1 0.7594 1.3619 3.1617 31 1 2.3659 3.1750 3.3901 32 1 3.5849 2.2664 2.4628 33 1 4.1278 -0.1308 5.1221 34 1 4.6137 0.3362 3.4742 35 1 3.9035 -1.8829 2.2456 36 1 4.0735 -2.3164 3.9636 37 1 1.3177 -2.7227 2.6955 38 1 3.1041 -4.2784 4.7508 39 1 1.3606 -4.6827 4.3051 40 1 2.0548 -5.0111 1.8869 41 1 3.7983 -4.6066 2.3318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886472406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:49 Heat of formation + Delta-G solvation = -34.920400 kcal Electronic energy + Delta-G solvation = -21989.191000 eV Core-core repulsion = 18870.973058 eV Total energy + Delta-G solvation = -3118.217942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27678 -37.89813 -36.80750 -34.19285 -33.94370 -32.30052 -30.24648 -28.17625 -26.35586 -25.20756 -23.26772 -22.83692 -21.95522 -20.84953 -20.06525 -18.37701 -16.53696 -16.41261 -15.98826 -15.70165 -15.17062 -14.95503 -14.57466 -14.41154 -14.34351 -13.32658 -13.19797 -12.82446 -12.53358 -12.37089 -12.13954 -11.45341 -11.38067 -11.26780 -11.11133 -11.00336 -10.86491 -10.73240 -10.60459 -10.49535 -10.30158 -10.05090 -9.96577 -9.68770 -9.19184 -8.96688 -8.47536 -7.98596 -7.93357 -6.07111 -4.09466 3.29066 3.36920 3.41959 3.50390 3.65248 3.90830 4.37352 4.43334 4.78845 5.08813 5.13391 5.19538 5.26609 5.31015 5.41947 5.43359 5.47550 5.68400 5.72107 5.80154 5.83311 5.90692 5.98498 6.06859 6.13346 6.24830 6.40244 6.51212 6.56349 6.64447 6.80282 6.86534 6.95880 7.11902 7.18321 7.42423 7.72636 7.94746 8.06265 8.34867 8.96998 9.22788 9.55648 11.00910 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.007401 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.716078 B = 3782.484552 C = 4925.799874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.044 0.956 4 C -0.497 4.497 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.517 3.483 13 O -0.518 6.518 14 N -0.626 5.626 15 C 0.075 3.925 16 C 0.046 3.954 17 O -0.385 6.385 18 C 0.052 3.948 19 C 0.115 3.885 20 H 0.071 0.929 21 C -0.076 4.076 22 C -0.082 4.082 23 C -0.217 4.217 24 C -0.167 4.167 25 H 0.034 0.966 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 0.249 12.496 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 H 0.062 0.938 4 C -0.536 4.536 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.393 6.393 14 N -0.364 5.364 15 C -0.048 4.048 16 C -0.032 4.032 17 O -0.303 6.303 18 C -0.025 4.025 19 C 0.011 3.989 20 H 0.089 0.911 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.254 4.254 24 C -0.205 4.205 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.664 -0.212 12.472 12.756 hybrid contribution 0.186 -0.449 -1.135 1.235 sum 2.850 -0.660 11.337 11.709 Atomic orbital electron populations 1.21702 0.96320 1.01008 0.99594 1.18893 0.94165 0.96456 0.89451 0.93788 1.21115 1.31044 1.12427 0.88986 0.91101 1.24933 0.95114 0.95037 0.99072 1.69888 1.37119 1.23071 1.23444 0.86432 0.78647 0.79765 0.82618 1.19614 1.21028 1.21104 1.21943 0.76080 0.87361 0.83739 1.90635 1.48118 1.16312 1.84235 1.48436 1.63280 1.14093 1.10621 1.22304 0.96652 0.82494 1.03375 1.22947 0.96959 0.96234 0.87028 1.87897 1.79941 1.31341 1.31131 1.23038 0.94832 0.83357 1.01320 1.21829 0.95584 0.93165 0.88291 0.91148 1.21408 0.96737 0.91657 1.01526 1.21935 1.00390 0.88281 0.99405 1.23250 1.02038 1.06850 0.93263 1.22685 1.01037 1.01241 0.95494 0.94640 0.97035 0.89250 0.93017 0.87464 0.91520 0.87992 0.92540 0.88378 0.92729 0.89018 0.93331 0.88086 0.89840 0.89950 0.89625 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.63 37.16 0.32 -2.62 16 2 C 0.03 0.75 1.78 -92.92 -0.17 0.58 16 3 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 4 C -0.50 -13.64 8.34 -34.44 -0.29 -13.92 16 5 H 0.07 2.05 6.99 -52.49 -0.37 1.68 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.67 11.39 55.43 0.63 -24.03 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.15 6.26 -10.99 -0.07 11.08 16 13 O -0.52 -11.95 9.03 5.56 0.05 -11.90 16 14 N -0.63 -11.01 3.03 -165.00 -0.50 -11.51 16 15 C 0.08 1.13 5.85 -3.75 -0.02 1.11 16 16 C 0.05 0.60 6.97 37.10 0.26 0.86 16 17 O -0.38 -5.43 10.74 -35.23 -0.38 -5.81 16 18 C 0.05 0.69 6.22 37.31 0.23 0.93 16 19 C 0.12 1.76 3.06 -67.42 -0.21 1.55 16 20 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 21 C -0.08 -1.21 4.52 -26.73 -0.12 -1.33 16 22 C -0.08 -1.39 3.31 -90.61 -0.30 -1.69 16 23 C -0.22 -3.07 10.18 -26.69 -0.27 -3.35 16 24 C -0.17 -2.72 10.13 -26.69 -0.27 -2.99 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.01 0.21 7.30 -51.93 -0.38 -0.16 16 27 H 0.09 2.22 6.26 -51.93 -0.33 1.90 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.11 1.72 5.29 -51.93 -0.27 1.45 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.74 6.21 -51.93 -0.32 1.42 16 36 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 37 H 0.10 1.98 6.82 -51.93 -0.35 1.63 16 38 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -29.00 316.43 -7.98 -36.99 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.54 Total: 3.30 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.00 Total: -8.28 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.13 Total: -35.54 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.33 Total: -17.71 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.00 -7.98 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886472406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.066 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds