Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 C 1.37102 * 119.99499 * 277.22616 * 3 2 1 5 5 H 1.08004 * 119.99547 * 163.49259 * 4 3 2 6 6 C 1.38943 * 120.00555 * 343.50168 * 4 3 2 7 7 N 1.31407 * 120.00562 * 145.93923 * 6 4 3 8 8 Si 1.86808 * 119.99718 * 325.94093 * 6 4 3 9 9 H 1.48498 * 109.47129 * 95.43544 * 8 6 4 10 10 H 1.48495 * 109.47139 * 215.43810 * 8 6 4 11 11 H 1.48502 * 109.46760 * 335.43503 * 8 6 4 12 12 C 1.34769 * 120.00043 * 97.23517 * 3 2 1 13 13 O 1.21295 * 119.99778 * 173.62458 * 12 3 2 14 14 C 1.50699 * 120.00093 * 353.90212 * 12 3 2 15 15 H 1.08997 * 109.55171 * 325.85216 * 14 12 3 16 16 C 1.53151 * 109.55800 * 86.06183 * 14 12 3 17 17 C 1.53043 * 109.40369 * 178.47363 * 16 14 12 18 18 O 1.43040 * 109.44196 * 300.66595 * 17 16 14 19 19 C 1.42583 * 113.86546 * 58.73222 * 18 17 16 20 20 C 1.53406 * 113.62150 * 171.83382 * 19 18 17 21 21 C 1.53851 * 86.97596 * 220.08938 * 20 19 18 22 22 C 1.53417 * 113.57519 * 73.90402 * 19 18 17 23 23 C 1.52808 * 112.92794 * 302.92027 * 19 18 17 24 24 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46796 * 300.00632 * 1 2 3 26 26 H 1.09006 * 109.46792 * 59.99945 * 1 2 3 27 27 H 1.08993 * 109.46734 * 239.99211 * 2 1 3 28 28 H 1.08998 * 109.46475 * 120.00041 * 2 1 3 29 29 H 0.97004 * 120.00051 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47876 * 298.45288 * 16 14 12 31 31 H 1.09000 * 109.48050 * 58.49263 * 16 14 12 32 32 H 1.08997 * 109.47818 * 60.65982 * 17 16 14 33 33 H 1.09006 * 109.47384 * 180.67871 * 17 16 14 34 34 H 1.09001 * 113.63218 * 334.61195 * 20 19 18 35 35 H 1.08999 * 113.62709 * 105.57027 * 20 19 18 36 36 H 1.08993 * 113.60452 * 270.59924 * 21 20 19 37 37 H 1.08995 * 113.60134 * 139.72787 * 21 20 19 38 38 H 1.08998 * 113.63704 * 254.47237 * 22 19 18 39 39 H 1.09004 * 113.63457 * 25.43793 * 22 19 18 40 40 H 1.09006 * 109.55701 * 294.08065 * 23 19 18 41 41 H 1.08999 * 109.56377 * 173.75005 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1060 2.0772 -1.1780 5 1 2.2040 3.1527 -1.1637 6 6 2.0686 1.3991 -2.3901 7 7 1.5006 1.9548 -3.4367 8 14 2.8258 -0.3027 -2.5320 9 1 1.7719 -1.3310 -2.3395 10 1 3.4342 -0.4632 -3.8770 11 1 3.8732 -0.4667 -1.4921 12 6 2.3816 1.9676 1.1578 13 8 2.8935 3.0671 1.1463 14 6 2.1574 1.2544 2.4663 15 1 1.2435 0.6634 2.4078 16 6 3.3457 0.3335 2.7584 17 6 3.1323 -0.3600 4.1059 18 8 3.0112 0.6261 5.1350 19 6 1.9395 1.5441 4.9310 20 6 1.6886 2.4717 6.1268 21 6 0.1863 2.2798 5.8564 22 6 0.5547 0.9396 5.1968 23 6 2.0343 2.2829 3.5968 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.4748 1.4815 -4.2830 30 1 3.4259 -0.4170 1.9720 31 1 4.2621 0.9226 2.7938 32 1 2.2220 -0.9581 4.0667 33 1 3.9832 -1.0067 4.3206 34 1 2.0178 2.0557 7.0791 35 1 2.0342 3.4931 5.9675 36 1 -0.2286 3.0091 5.1607 37 1 -0.4098 2.1710 6.7624 38 1 -0.0116 0.7289 4.2896 39 1 0.5704 0.1002 5.8921 40 1 2.9120 2.9293 3.5992 41 1 1.1371 2.8836 3.4476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = -45.791405 kcal Electronic energy + Delta-G solvation = -22019.144968 eV Core-core repulsion = 18900.455624 eV Total energy + Delta-G solvation = -3118.689344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61631 -38.72778 -36.27152 -35.32933 -33.38503 -32.11373 -29.77863 -29.37046 -26.14746 -25.81865 -23.95160 -23.67951 -22.95818 -21.17729 -18.69653 -18.39251 -16.98585 -16.67545 -16.27540 -16.09958 -15.45152 -14.98766 -14.58315 -14.16272 -13.60326 -13.46419 -13.23635 -13.01099 -12.80797 -12.63478 -12.35739 -12.32830 -11.79686 -11.72592 -11.50427 -11.27173 -11.14144 -10.88206 -10.82655 -10.73179 -10.69997 -10.31438 -10.22861 -9.91797 -9.61880 -9.34176 -9.05213 -8.34932 -7.96038 -6.50562 -3.80171 2.97415 3.19106 3.21619 3.66848 3.83483 4.08105 4.28878 4.56416 4.63205 4.78627 4.82954 4.90825 5.07658 5.18330 5.24118 5.30377 5.42849 5.53507 5.62556 5.65382 5.69958 5.77021 5.79046 5.85873 5.87464 5.88956 5.98106 6.00230 6.09289 6.21097 6.31927 6.34336 6.36669 6.41451 6.59781 6.81264 7.37603 7.45587 8.20297 8.46388 8.96501 9.34865 9.79883 10.61129 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.005950 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.032865 B = 4704.746738 C = 4857.573989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.087 3.913 3 N -0.455 5.455 4 C -0.322 4.322 5 H 0.113 0.887 6 C 0.062 3.938 7 N -0.843 5.843 8 Si 0.866 3.134 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.268 1.268 12 C 0.456 3.544 13 O -0.573 6.573 14 C -0.101 4.101 15 H 0.081 0.919 16 C -0.147 4.147 17 C 0.066 3.934 18 O -0.369 6.369 19 C 0.093 3.907 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.164 4.164 23 C -0.102 4.102 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.274 0.726 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -6.954 15.065 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.037 4.037 3 N -0.175 5.175 4 C -0.448 4.448 5 H 0.131 0.869 6 C -0.145 4.145 7 N -0.478 5.478 8 Si 0.695 3.305 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.194 1.194 12 C 0.245 3.755 13 O -0.456 6.456 14 C -0.122 4.122 15 H 0.099 0.901 16 C -0.185 4.185 17 C -0.011 4.011 18 O -0.288 6.288 19 C 0.053 3.947 20 C -0.159 4.159 21 C -0.176 4.176 22 C -0.202 4.202 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.238 -6.371 14.973 16.425 hybrid contribution 0.221 -1.178 -0.721 1.399 sum -2.017 -7.549 14.253 16.254 Atomic orbital electron populations 1.22079 0.95912 1.00848 1.03202 1.21804 0.95236 0.85610 1.01023 1.43858 1.55639 1.11091 1.06900 1.19120 1.50875 0.93883 0.80939 0.86898 1.25077 0.96178 0.97908 0.95326 1.69938 1.35423 1.39848 1.02636 0.87176 0.80731 0.85125 0.77419 1.20283 1.21751 1.19367 1.19778 0.83407 0.87887 0.84447 1.90535 1.46615 1.21775 1.86724 1.21234 0.99098 0.97332 0.94584 0.90074 1.22170 0.99191 0.99375 0.97746 1.22520 1.01180 0.90292 0.87119 1.87896 1.52168 1.42914 1.45811 1.22764 0.85948 0.90506 0.95450 1.22996 0.95723 0.99395 0.97785 1.22713 0.96157 0.97745 1.01007 1.23536 0.97537 0.97784 1.01315 1.21635 1.04149 0.97342 0.90866 0.92851 0.92813 0.90911 0.92294 0.91270 0.91572 0.90684 0.90328 0.93236 0.89015 0.89399 0.90620 0.89710 0.91052 0.91082 0.89657 0.89609 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.08 37.16 0.37 -2.52 16 2 C 0.09 1.75 4.84 -4.04 -0.02 1.73 16 3 N -0.46 -11.04 2.49 -114.81 -0.29 -11.33 16 4 C -0.32 -9.11 9.59 -14.93 -0.14 -9.25 16 5 H 0.11 3.61 7.57 -52.48 -0.40 3.21 16 6 C 0.06 1.68 5.23 -17.47 -0.09 1.59 16 7 N -0.84 -23.88 13.96 55.50 0.77 -23.11 16 8 Si 0.87 20.24 24.97 -169.99 -4.25 16.00 16 9 H -0.27 -5.95 6.74 56.52 0.38 -5.56 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.46 10.64 6.72 -10.99 -0.07 10.57 16 13 O -0.57 -15.65 15.69 5.54 0.09 -15.57 16 14 C -0.10 -1.76 1.66 -91.53 -0.15 -1.91 16 15 H 0.08 1.29 5.83 -51.93 -0.30 0.99 16 16 C -0.15 -2.28 5.12 -26.63 -0.14 -2.42 16 17 C 0.07 0.84 6.74 37.18 0.25 1.09 16 18 O -0.37 -5.33 10.52 -35.23 -0.37 -5.70 16 19 C 0.09 1.26 1.16 -90.29 -0.10 1.15 16 20 C -0.12 -1.40 7.50 -26.08 -0.20 -1.59 16 21 C -0.14 -1.44 7.73 -25.85 -0.20 -1.64 16 22 C -0.16 -1.88 6.91 -26.07 -0.18 -2.06 16 23 C -0.10 -1.66 4.10 -26.66 -0.11 -1.77 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.06 1.27 1.67 -51.93 -0.09 1.18 16 28 H 0.07 1.17 4.84 -51.93 -0.25 0.92 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.07 1.13 6.64 -51.93 -0.34 0.78 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 0.57 7.84 -51.93 -0.41 0.16 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.08 0.89 7.61 -51.93 -0.40 0.49 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.83 7.57 -51.93 -0.39 0.43 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 41 H 0.08 1.22 7.31 -51.93 -0.38 0.84 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -31.41 311.47 -6.41 -37.82 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.28 Total: 4.22 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.78 Total: -7.03 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.49 Total: -34.44 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.28 Total: -21.26 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.25 Total: 16.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.41 -6.41 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.967 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds