Wall clock time and date at job start Mon Mar 30 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47035 * 2 1 4 4 C 1.50694 * 109.47201 * 120.00193 * 2 1 3 5 5 H 1.07997 * 119.99932 * 119.99925 * 4 2 1 6 6 C 1.37875 * 120.00180 * 299.99570 * 4 2 1 7 7 N 1.31514 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00235 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46989 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47184 * 120.00227 * 8 6 4 11 11 H 1.48498 * 109.47508 * 240.00465 * 8 6 4 12 12 C 1.50704 * 109.46994 * 240.00635 * 2 1 3 13 13 O 1.21283 * 119.99483 * 240.00024 * 12 2 1 14 14 N 1.34774 * 120.00504 * 59.99638 * 12 2 1 15 15 C 1.46492 * 120.00196 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47402 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.26357 * 57.92390 * 16 15 14 18 18 C 1.54995 * 110.30668 * 179.97438 * 16 15 14 19 19 C 1.55442 * 101.05235 * 155.04111 * 18 16 15 20 20 C 1.53906 * 102.02079 * 326.37645 * 19 18 16 21 21 C 1.53192 * 114.63894 * 151.40926 * 20 19 18 22 22 C 1.53891 * 86.91694 * 90.92247 * 21 20 19 23 23 C 1.53206 * 114.55810 * 250.63994 * 20 19 18 24 24 O 1.42631 * 108.28862 * 20.96720 * 20 19 18 25 25 H 1.08997 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47083 * 300.00099 * 1 2 3 27 27 H 1.09001 * 109.47537 * 59.99283 * 1 2 3 28 28 H 0.96997 * 120.00579 * 179.97438 * 7 6 4 29 29 H 0.97007 * 119.99692 * 359.97438 * 14 12 2 30 30 H 1.09005 * 109.46995 * 59.99907 * 15 14 12 31 31 H 1.08995 * 109.47272 * 300.00090 * 15 14 12 32 32 H 1.09002 * 111.11257 * 273.00007 * 18 16 15 33 33 H 1.08997 * 111.11078 * 37.08386 * 18 16 15 34 34 H 1.08993 * 110.91378 * 84.53258 * 19 18 16 35 35 H 1.09001 * 110.91308 * 208.16002 * 19 18 16 36 36 H 1.08999 * 113.64637 * 205.43525 * 21 20 19 37 37 H 1.09006 * 113.63705 * 336.42252 * 21 20 19 38 38 H 1.09002 * 113.59948 * 270.43695 * 22 21 20 39 39 H 1.08998 * 113.67077 * 139.58773 * 22 21 20 40 40 H 1.09000 * 113.63893 * 23.50039 * 23 20 19 41 41 H 1.08992 * 113.64408 * 154.40440 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4547 15 6 2.1945 -0.9407 -3.6508 16 6 1.6841 -0.2197 -4.9000 17 1 2.0097 0.8205 -4.8951 18 6 2.1901 -0.9352 -6.1785 19 6 1.1028 -0.5134 -7.2062 20 6 -0.1589 -0.4438 -6.3275 21 6 -1.2175 0.5538 -6.8080 22 6 -1.8272 -0.6078 -7.6125 23 6 -1.1790 -1.5566 -6.5889 24 8 0.2494 -0.2958 -4.9689 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1608 3.4844 29 1 1.1486 0.5386 -2.5436 30 1 1.8308 -1.9682 -3.6506 31 1 3.2845 -0.9411 -3.6510 32 1 3.1726 -0.5657 -6.4724 33 1 2.2044 -2.0167 -6.0436 34 1 1.3314 0.4616 -7.6363 35 1 0.9929 -1.2658 -7.9872 36 1 -1.8650 0.9215 -6.0120 37 1 -0.8146 1.3526 -7.4307 38 1 -1.4173 -0.7048 -8.6179 39 1 -2.9169 -0.6269 -7.5962 40 1 -0.7451 -2.4511 -7.0357 41 1 -1.8147 -1.7770 -5.7314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893905845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:34 Heat of formation + Delta-G solvation = -75.319643 kcal Electronic energy + Delta-G solvation = -20690.147427 eV Core-core repulsion = 17570.177643 eV Total energy + Delta-G solvation = -3119.969784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65835 -38.65733 -36.81335 -33.82806 -33.61374 -32.26810 -30.53856 -28.62194 -25.97711 -25.07063 -24.78050 -22.92086 -22.07417 -21.25182 -19.27104 -18.97360 -17.01681 -16.39633 -16.16980 -15.88264 -15.22402 -15.03547 -14.62768 -14.34555 -13.85067 -13.65504 -13.15412 -12.69317 -12.67506 -12.38194 -12.31136 -12.13629 -11.82913 -11.56996 -11.35695 -11.19775 -11.11440 -10.95743 -10.75517 -10.61953 -10.59048 -10.50966 -10.15883 -9.89470 -9.46171 -8.87835 -8.53073 -8.32069 -8.24587 -5.96411 -3.99110 3.36582 3.43714 3.51448 3.54471 3.85493 4.03987 4.21258 4.29980 4.37834 4.52993 4.57225 4.68042 4.83941 4.90661 5.09550 5.27733 5.36346 5.37976 5.46342 5.48456 5.57817 5.59589 5.67143 5.73826 5.82145 5.84235 6.01674 6.11689 6.15613 6.40133 6.73799 6.94816 7.02827 7.04129 7.21943 7.57367 7.84604 8.07364 8.24931 8.56128 9.10404 9.35298 9.66212 11.11296 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.003784 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.418416 B = 7398.281615 C = 7809.089843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.741 5.741 15 C 0.124 3.876 16 C 0.069 3.931 17 H 0.077 0.923 18 C -0.148 4.148 19 C -0.129 4.129 20 C 0.082 3.918 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 O -0.352 6.352 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.399 0.601 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 0.485 -22.246 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.427 6.427 14 N -0.396 5.396 15 C -0.001 4.001 16 C 0.011 3.989 17 H 0.095 0.905 18 C -0.186 4.186 19 C -0.166 4.166 20 C 0.042 3.958 21 C -0.179 4.179 22 C -0.178 4.178 23 C -0.177 4.177 24 O -0.271 6.271 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.233 0.767 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.863 -0.132 -21.832 22.020 hybrid contribution 0.112 -0.007 0.572 0.583 sum -2.751 -0.139 -21.260 21.438 Atomic orbital electron populations 1.21720 0.96489 0.99778 1.00902 1.18872 0.94206 0.96788 0.89407 0.93081 1.21205 1.30700 1.12697 0.89045 0.90767 1.24955 0.95199 0.95103 0.99087 1.69888 1.37284 1.23224 1.23310 0.86413 0.78592 0.79789 0.82550 1.19581 1.21101 1.21086 1.21960 0.78400 0.84255 0.84531 1.90518 1.38316 1.27011 1.86868 1.46177 1.55338 1.32751 1.05290 1.21324 0.98567 0.96683 0.83490 1.23293 0.81518 0.99260 0.94834 0.90527 1.23262 0.99310 1.01898 0.94106 1.22840 0.93267 1.02632 0.97901 1.23155 0.93443 0.96690 0.82502 1.23326 0.98042 0.96859 0.99643 1.22698 1.00575 0.96707 0.97817 1.23294 0.98026 0.97023 0.99394 1.88473 1.20453 1.93468 1.24716 0.95099 0.88967 0.96782 0.93103 0.76730 0.91682 0.91049 0.89604 0.89885 0.90207 0.89867 0.89143 0.91226 0.90180 0.90869 0.91208 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.03 0.74 2.64 -92.93 -0.25 0.49 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.59 8.37 -34.44 -0.29 -14.88 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.82 11.32 55.43 0.63 -25.19 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.52 12.45 7.15 -10.98 -0.08 12.37 16 13 O -0.55 -14.97 15.46 5.56 0.09 -14.89 16 14 N -0.74 -13.89 5.40 -60.30 -0.33 -14.21 16 15 C 0.12 1.93 5.39 -4.05 -0.02 1.91 16 16 C 0.07 0.83 3.49 -25.68 -0.09 0.74 16 17 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 18 C -0.15 -1.35 6.57 -24.38 -0.16 -1.51 16 19 C -0.13 -1.05 6.13 -24.96 -0.15 -1.20 16 20 C 0.08 0.85 1.66 -89.94 -0.15 0.70 16 21 C -0.14 -1.28 7.60 -26.17 -0.20 -1.48 16 22 C -0.14 -1.09 7.88 -25.81 -0.20 -1.29 16 23 C -0.14 -1.34 7.51 -26.16 -0.20 -1.53 16 24 O -0.35 -4.77 10.77 -35.23 -0.38 -5.15 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.40 6.81 7.89 -40.82 -0.32 6.48 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 34 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 35 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -32.59 330.29 -8.40 -40.99 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.82 Total: 3.20 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.55 Total: -7.00 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.30 Total: -39.40 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.29 Total: -20.04 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.59 -8.40 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893905845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.326 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds