Wall clock time and date at job start Mon Mar 30 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46497 * 109.46874 * 120.00935 * 2 1 3 13 13 C 1.34782 * 119.99869 * 274.99065 * 12 2 1 14 14 O 1.21275 * 119.99718 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00042 * 179.97438 * 13 12 2 16 16 C 1.54237 * 105.29986 * 298.55319 * 15 13 12 17 17 C 1.55545 * 100.34937 * 275.60421 * 16 15 13 18 18 O 1.44407 * 103.14607 * 320.43952 * 17 16 15 19 19 C 1.45101 * 107.53957 * 38.15740 * 18 17 16 20 20 H 1.09002 * 108.87251 * 97.03057 * 19 18 17 21 21 C 1.51588 * 107.28561 * 213.90247 * 19 18 17 22 22 C 1.52203 * 113.02207 * 150.54808 * 21 19 18 23 23 C 1.53532 * 107.82936 * 301.66503 * 22 21 19 24 24 C 1.49217 * 106.05372 * 59.00298 * 15 13 12 25 25 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 26 26 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 27 27 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00126 * 94.99969 * 12 2 1 30 30 H 1.09000 * 111.23520 * 33.38475 * 16 15 13 31 31 H 1.09005 * 111.23760 * 157.78583 * 16 15 13 32 32 H 1.09010 * 110.68050 * 78.85203 * 17 16 15 33 33 H 1.08996 * 110.68514 * 201.85098 * 17 16 15 34 34 H 1.09000 * 108.77481 * 271.46343 * 21 19 18 35 35 H 1.08997 * 108.77048 * 29.63214 * 21 19 18 36 36 H 1.09001 * 109.79260 * 61.25040 * 22 21 19 37 37 H 1.09005 * 109.78732 * 182.02423 * 22 21 19 38 38 H 1.09003 * 109.88957 * 189.06628 * 23 22 21 39 39 H 1.08995 * 109.89121 * 310.09151 * 23 22 21 40 40 H 1.08997 * 108.69792 * 267.59953 * 24 15 13 41 41 H 1.08997 * 108.69481 * 25.57262 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0183 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8585 1.1581 2.4117 15 6 2.6488 -0.7292 3.5876 16 6 1.6150 -1.8393 3.8664 17 6 0.5555 -1.0376 4.6752 18 8 1.3612 -0.1783 5.5106 19 6 2.4980 0.2578 4.7214 20 1 2.2828 1.2429 4.3075 21 6 3.6776 0.3881 5.6645 22 6 5.0149 0.1336 4.9837 23 6 4.9771 -1.2804 4.3868 24 6 4.0013 -1.2540 3.2384 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9030 -0.5275 -4.4376 29 1 2.2490 -1.6319 1.1524 30 1 1.1931 -2.2278 2.9394 31 1 2.0475 -2.6401 4.4662 32 1 -0.0724 -0.4470 4.0078 33 1 -0.0536 -1.7076 5.2819 34 1 3.6829 1.3946 6.0828 35 1 3.5566 -0.3269 6.4783 36 1 5.1704 0.8650 4.1905 37 1 5.8206 0.2052 5.7145 38 1 5.9691 -1.5597 4.0316 39 1 4.6393 -1.9920 5.1401 40 1 3.8951 -2.2718 2.8631 41 1 4.4226 -0.6347 2.4465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931156700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:59 Heat of formation + Delta-G solvation = -87.112118 kcal Electronic energy + Delta-G solvation = -22009.051319 eV Core-core repulsion = 18888.570174 eV Total energy + Delta-G solvation = -3120.481145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32392 -38.07622 -36.19695 -35.09634 -33.35669 -32.14000 -29.99299 -29.63101 -28.70568 -25.24526 -23.49699 -22.89125 -22.50554 -21.21185 -19.74247 -18.50418 -17.76096 -16.40456 -16.06747 -15.63832 -15.29300 -15.14795 -14.53867 -14.51348 -13.99421 -13.70898 -13.25204 -13.00971 -12.89294 -12.62178 -12.31304 -12.21421 -11.95855 -11.85877 -11.54992 -11.39828 -11.29806 -11.07468 -10.84589 -10.61619 -10.45925 -10.23815 -10.13435 -9.74203 -9.46236 -9.27716 -8.93383 -8.79821 -8.22118 -6.24914 -4.27725 3.13598 3.20439 3.32602 3.36862 3.70902 3.90922 4.28041 4.35364 4.71525 4.74819 4.90726 4.97442 5.03493 5.10021 5.26020 5.30638 5.37218 5.44120 5.60156 5.69296 5.72720 5.77078 5.85521 5.92083 6.00285 6.10104 6.12226 6.19398 6.25994 6.28695 6.32596 6.42283 6.51270 6.80549 6.96868 7.13603 7.23448 7.46865 8.08464 8.46298 8.70574 8.84412 9.35850 10.87191 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028065 B = 0.005801 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.444749 B = 4825.470151 C = 5157.223500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.502 3.498 14 O -0.550 6.550 15 C -0.094 4.094 16 C -0.146 4.146 17 C 0.046 3.954 18 O -0.381 6.381 19 C 0.086 3.914 20 H 0.103 0.897 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.102 4.102 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -2.771 16.266 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.344 5.344 13 C 0.287 3.713 14 O -0.429 6.429 15 C -0.098 4.098 16 C -0.184 4.184 17 C -0.031 4.031 18 O -0.300 6.300 19 C 0.029 3.971 20 H 0.121 0.879 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.034 -1.861 16.254 16.486 hybrid contribution -0.576 0.180 -0.674 0.905 sum 1.459 -1.681 15.579 15.738 Atomic orbital electron populations 1.22450 0.99314 1.00830 0.99329 1.19121 0.90133 0.94673 0.82831 0.93415 1.21022 1.33350 1.14445 0.88507 0.90198 1.24826 0.95465 0.96675 0.95527 1.69865 1.44848 1.40065 0.98058 0.86884 0.80539 0.83630 0.77477 1.20297 1.22099 1.18707 1.46170 1.64887 1.13774 1.09610 1.20614 0.78018 0.87504 0.85187 1.90598 1.51633 1.16214 1.84435 1.20631 0.97313 0.96568 0.95250 1.23412 0.95635 0.97407 1.01928 1.23544 0.93649 0.92217 0.93703 1.89061 1.36870 1.67017 1.37073 1.22185 0.86737 0.98768 0.89380 0.87936 1.21195 0.93199 1.02430 0.98418 1.21496 0.96463 0.97351 1.00353 1.21232 0.98993 0.97242 0.97792 1.20269 0.92370 1.01984 0.99376 0.94618 0.93408 0.92813 0.92251 0.77118 0.89195 0.89551 0.92013 0.89024 0.91636 0.91288 0.91435 0.91453 0.91130 0.91643 0.90858 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.24 5.54 2.15 -69.08 -0.15 5.39 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 4 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 8 Si 0.89 21.67 24.37 -169.99 -4.14 17.52 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 12 N -0.70 -13.46 4.44 -54.93 -0.24 -13.71 16 13 C 0.50 9.32 5.21 -10.99 -0.06 9.26 16 14 O -0.55 -12.25 14.42 5.56 0.08 -12.17 16 15 C -0.09 -1.34 0.82 -157.85 -0.13 -1.47 16 16 C -0.15 -1.79 5.83 -24.73 -0.14 -1.93 16 17 C 0.05 0.61 7.49 38.51 0.29 0.90 16 18 O -0.38 -5.83 10.97 -35.23 -0.39 -6.22 16 19 C 0.09 1.29 3.19 -28.41 -0.09 1.20 16 20 H 0.10 1.84 5.84 -51.93 -0.30 1.54 16 21 C -0.11 -1.40 5.44 -27.85 -0.15 -1.55 16 22 C -0.12 -1.28 5.98 -26.86 -0.16 -1.44 16 23 C -0.12 -1.18 6.04 -27.60 -0.17 -1.35 16 24 C -0.10 -1.27 4.32 -29.73 -0.13 -1.40 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.74 7.66 -40.82 -0.31 6.43 16 30 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.92 8.02 -51.92 -0.42 0.50 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 41 H 0.07 1.04 7.50 -51.93 -0.39 0.65 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -30.90 309.95 -6.74 -37.63 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.51 Total: 5.71 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.97 Total: -8.08 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.53 Total: -39.07 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.31 Total: -18.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.90 -6.74 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.478 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds